Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010344

Physical Location & Seq

Genomic Coordinates Reverse (-)

10983899 .. 10985339

Gene Structure 1441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGTGAGAATTGTAACTATGCACATGGCATTGAAGATATCCGCCATCCCCCGCCCAATTGGCAAGAACTTGTTTCCATACGTGATGAGGATCGGCCATTGTCTGGTAATTGGGATGATCGATCAGAAAATAATCCACAGGATGAAGCTGTGCAAGAAGTTTTATAATGGTGAGGAGTGTCCTTATGGAGATAGGTGTAACTTTCTTCATGAAGATCCATCAAAGTTTAGGGATGATTCGGGTAGGTTTAGGGAGAACACAGCAATAAGCATTGGAACTACAGGAGCACCAGTGGCTCATGGGAGTGGCTCTAATCCTCCTGAGGAAAATAGGCTTGTAAACGCGGGTATGGATGCTTCCCGGGGAAATGTGAAGCCAGTGTATTGGAAGACAAAGTTATGTAATAAGTGGGAGACAACGGGTAAATGCCCCTTCAGCGAGAAATGTCACTTTGCTCACGGGCTAACAGAGTTGCAAGCGCCCGGTGGACGTACCGTTGAGGCAGAATTTCTGAATACCCCTCCCCTTCCGATACCCCAAGTTGTTGCTGCTGTCAACTCATCCGCAACTGCAATAGCAGCACTTCCTGCTTTAAACAACGATGGGGGGCAGAGGAAGAAGGGCATGCTAAAATGGAAAGGGTCCAAGAAGATCGATCGCATATACGCTGACTGGCTTGATGATGTTCCGCTGGTGCACCAGCACAACTTAGTCGAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

241

Amino Acids

26.62

Weight (kDa)

9.24

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	48 - 70	1.3e-06	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	49 - 70	6e-08	CCCH-type zinc finger
zf-CCCH	PF00642	129 - 154	3.1e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	130 - 153	1.9e-06	DUS3L CCCH zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19360 AT3G19360
fragaria_vesca	FvH4_1g03610 FvH4_1g03610
malus_domestica	MD02G1035700.v1.1 MD15G1175900.v1.1
prunus_persica	Prupe.7G239500_v2.0.a1
pyrus_communis	pycom02g02950 pycom15g15790
rosa_chinensis	RchiOBHm_Chr2g0089141
rosa_laevigata	RLG00000015995
rosa_multiflora	Rmu_sc0016750.1_g000003 Rmu_sc0029975.1_g000003
rosa_roxburghii	Rroxscaffold_2G00152210
rosa_rugosa	Rorug01G0487700 Rorug01G0487800
rosa_samantha	Rh2AG043300 Rh2BG042100 Rh2CG043400 Rh2DG042400
rosa_wichuraiana	Rw2G003430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	103
AccII	CGCG	1 cut(s)	344
AciI	CCGC	5 cut(s)	42, 52, 344, 564, 689
AclWI	GGATC	2 cut(s)	98, 209
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	418
AfaI	GTAC	1 cut(s)	493
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	2 cut(s)	148, 720
AluI	AGCT	2 cut(s)	148, 720
Alw21I	GWGCWC	2 cut(s)	289, 699
Alw26I	GTCTC	1 cut(s)	407
Alw44I	GTGCAC	1 cut(s)	695
AlwI	GGATC	2 cut(s)	98, 209
Ama87I	CYCGRG	1 cut(s)	360
AoxI	GGCC	1 cut(s)	94
ApaLI	GTGCAC	1 cut(s)	695
ApeKI	GCWGC	2 cut(s)	548, 578
ApoI	RAATTY	1 cut(s)	506
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	1 cut(s)	642
AsuC2I	CCSGG	3 cut(s)	361, 362, 483
AsuHPI	GGTGA	2 cut(s)	16, 182
AvaI	CYCGRG	1 cut(s)	360
AvaII	GGWCC	1 cut(s)	642
AxyI	CCTNAGG	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	699
BarI	GAAGNNNNNNTAC	2 cut(s)	340, 372
BbsI	GAAGAC	1 cut(s)	395
Bbv12I	GWGCWC	2 cut(s)	289, 699
BbvI	GCAGC	2 cut(s)	535, 590
BccI	CCATC	3 cut(s)	53, 226, 596
BcnI	CCSGG	3 cut(s)	361, 362, 483
BcoDI	GTCTC	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	482
BglI	GCCNNNNNGGC	1 cut(s)	60
BisI	GCNGC	2 cut(s)	549, 579
BlsI	GCNGC	2 cut(s)	550, 580
Bme1390I	CCNGG	3 cut(s)	361, 362, 483
Bme18I	GGWCC	1 cut(s)	642
BmeT110I	CYCGRG	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	642
BmiI	GGNNCC	1 cut(s)	643
BmrFI	CCNGG	3 cut(s)	361, 362, 483
BmsI	GCATC	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	395
BpuMI	CCSGG	3 cut(s)	361, 362, 483
Bsa29I	ATCGAT	2 cut(s)	120, 654
BsaAI	YACGTR	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	360, 361
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	3 cut(s)	290, 377, 677
Bse21I	CCTNAGG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	89
BseCI	ATCGAT	2 cut(s)	120, 654
BseDI	CCNNGG	2 cut(s)	360, 361
BseGI	GGATG	6 cut(s)	45, 120, 147, 238, 358, 560
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	3 cut(s)	290, 377, 677
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	2 cut(s)	535, 590
Bsh1236I	CGCG	1 cut(s)	344
Bsh1285I	CGRYCG	1 cut(s)	658
BshFI	GGCC	1 cut(s)	96
BshVI	ATCGAT	2 cut(s)	120, 654
BsiEI	CGRYCG	1 cut(s)	658
BsiHKAI	GWGCWC	2 cut(s)	289, 699
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	2 cut(s)	361, 483
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	96
BsoBI	CYCGRG	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	289, 699
Bsp143I	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
BspACI	CCGC	5 cut(s)	42, 52, 344, 564, 689
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	313
BspDI	ATCGAT	2 cut(s)	120, 654
BspFNI	CGCG	1 cut(s)	344
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	643
BspPI	GGATC	2 cut(s)	98, 209
BsrI	ACTGG	3 cut(s)	290, 377, 677
BssECI	CCNNGG	2 cut(s)	360, 361
BssMI	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
Bst4CI	ACNGT	1 cut(s)	496
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	477, 626
BstDEI	CTNAG	2 cut(s)	321, 709
BstF5I	GGATG	6 cut(s)	45, 120, 147, 238, 358, 560
BstFNI	CGCG	1 cut(s)	344
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	6 cut(s)	93, 120, 124, 217, 654, 658
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
BstMCI	CGRYCG	1 cut(s)	658
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 293, 435, 578, 587
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	3 cut(s)	359, 360, 481
BstSFI	CTRYAG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	699
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	2 cut(s)	535, 590
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	214
BstXI	CCANNNNNNTGG	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	214
Bsu15I	ATCGAT	2 cut(s)	120, 654
Bsu36I	CCTNAGG	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	96
BsuTUI	ATCGAT	2 cut(s)	120, 654
BtsCI	GGATG	6 cut(s)	45, 120, 147, 238, 358, 560
BtsIMutI	CAGTG	2 cut(s)	297, 384
Cac8I	GCNNGC	2 cut(s)	477, 626
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	1 cut(s)	481
Cfr13I	GGNCC	1 cut(s)	642
Cfr9I	CCCGGG	1 cut(s)	360
ClaI	ATCGAT	2 cut(s)	120, 654
Csp6I	GTAC	1 cut(s)	492
CviAII	CATG	4 cut(s)	25, 209, 299, 625
CviJI	RGCY	9 cut(s)	96, 148, 296, 309, 334, 376, 463, 676, 720
CviKI_1	RGCY	9 cut(s)	96, 148, 296, 309, 334, 376, 463, 676, 720
CviQI	GTAC	1 cut(s)	492
DdeI	CTNAG	2 cut(s)	321, 709
DpnI	GATC	6 cut(s)	92, 119, 123, 216, 653, 657
DpnII	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
DraI	TTTAAA	1 cut(s)	594
EaeI	YGGCCR	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	642
Eco57I	CTGAAG	1 cut(s)	418
Eco81I	CCTNAGG	1 cut(s)	321
Eco88I	CYCGRG	1 cut(s)	360
EcoRV	GATATC	1 cut(s)	39
FaeI	CATG	4 cut(s)	28, 212, 302, 628
FatI	CATG	4 cut(s)	24, 208, 298, 624
FauI	CCCGC	2 cut(s)	59, 337
Fnu4HI	GCNGC	2 cut(s)	549, 579
FokI	GGATG	6 cut(s)	32, 127, 154, 245, 365, 547
Fsp4HI	GCNGC	2 cut(s)	549, 579
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	2 cut(s)	549, 579
HaeII	RGCGCY	1 cut(s)	482
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	2 cut(s)	361, 483
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	4 cut(s)	28, 212, 302, 628
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	2 cut(s)	361, 483
HphI	GGTGA	2 cut(s)	16, 182
Hpy166II	GTNNAC	4 cut(s)	340, 488, 556, 697
Hpy188I	TCNGA	3 cut(s)	126, 513, 531
Hpy188III	TCNNGA	3 cut(s)	209, 320, 715
Hpy8I	GTNNAC	4 cut(s)	340, 488, 556, 697
HpyAV	CCTTC	3 cut(s)	442, 536, 613
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	2 cut(s)	81, 490
HpyCH4V	TGCA	5 cut(s)	22, 153, 475, 572, 697
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 293, 435, 578, 587
HpyF3I	CTNAG	2 cut(s)	321, 709
HpySE526I	ACGT	2 cut(s)	81, 490
Hsp92II	CATG	4 cut(s)	28, 212, 302, 628
HspAI	GCGC	1 cut(s)	479
Kzo9I	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
LmnI	GCTCC	1 cut(s)	284
Lsp1109I	GCAGC	2 cut(s)	535, 590
LweI	GCATC	1 cut(s)	343
MaeII	ACGT	2 cut(s)	81, 490
MaeIII	GTNAC	3 cut(s)	13, 197, 446
MalI	GATC	6 cut(s)	92, 119, 123, 216, 653, 657
MboI	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
MboII	GAAGA	6 cut(s)	46, 197, 224, 400, 628, 661
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	2 cut(s)	289, 699
MluCI	AATT	4 cut(s)	9, 57, 108, 506
MnlI	CCTC	7 cut(s)	81, 166, 316, 327, 493, 531, 606
MseI	TTAA	1 cut(s)	593
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	691
MspI	CCGG	2 cut(s)	361, 483
MspR9I	CCNGG	3 cut(s)	361, 362, 483
MunI	CAATTG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	5 cut(s)	60, 293, 435, 578, 587
NciI	CCSGG	3 cut(s)	361, 362, 483
NdeII	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
NlaIII	CATG	4 cut(s)	28, 212, 302, 628
NlaIV	GGNNCC	1 cut(s)	643
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	1 cut(s)	628
PaeI	GCATGC	1 cut(s)	628
PagI	TCATGA	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	236
PflMI	CCANNNNNTGG	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	550, 580
Ple19I	CGATCG	1 cut(s)	658
Ppu21I	YACGTR	1 cut(s)	82
PsiI	TTATAA	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	643
PspPI	GGNCC	1 cut(s)	642
PsuI	RGATCY	1 cut(s)	214
PvuI	CGATCG	1 cut(s)	658
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	593
SatI	GCNGC	2 cut(s)	549, 579
Sau3AI	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
Sau96I	GGNCC	1 cut(s)	642
ScrFI	CCNGG	3 cut(s)	361, 362, 483
SduI	GDGCHC	2 cut(s)	289, 699
SetI	ASST	6 cut(s)	84, 150, 197, 248, 493, 722
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	642
SmaI	CCCGGG	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	303
SphI	GCATGC	1 cut(s)	628
Sse9I	AATT	4 cut(s)	9, 57, 108, 506
SsiI	CCGC	5 cut(s)	42, 52, 344, 564, 689
StyD4I	CCNGG	3 cut(s)	359, 360, 481
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	2 cut(s)	84, 493
TaqI	TCGA	3 cut(s)	120, 654, 714
TasI	AATT	4 cut(s)	9, 57, 108, 506
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	593
Tru9I	TTAA	1 cut(s)	593
TscAI	CASTG	2 cut(s)	297, 384
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	548, 578
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	3 cut(s)	158, 197, 225
TspMI	CCCGGG	1 cut(s)	360
TspRI	CASTG	2 cut(s)	297, 384
Van91I	CCANNNNNTGG	1 cut(s)	103
VneI	GTGCAC	1 cut(s)	695
VpaK11BI	GGWCC	1 cut(s)	642
XapI	RAATTY	1 cut(s)	506
XceI	RCATGY	1 cut(s)	628
XmaI	CCCGGG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.