pycom15g18170
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014417
Physical Location & Seq
Forward (+)
12885720 .. 12887345
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 960 bp
ATGGGCAGAAAGTGTTCACATTGTGGAAACGTAGGCCACAACTCTAGGACCTGCACAAATTTCAGAGGCACTCCTAGTAGCACTAGTTTTGTTGGATTTAGGCTCTTCGGTGTCCAACTTCACCATGATCACCATCATATCGTGATGTCTTCTTCTAACATGAACAGTAATTCTGCTAATCATCATGTTGCCATGTCCATGAAGAAAAGTTTCAGCACGGATTGCTTGCCGACAACGTCGTCAGCCTCTTCATCTTCCCCATCTAACTCTTCATTGTCTCCTTCAAGACTTTCCATGGATGAAAATATTTGTGCAGCAGATAAAGCCTCCATCGGCTATCTCTCCGACGGTCTCATATGCCGAGCCCAAGAAAGGAAGAAGGGAGTTCCATGGACGGAAGAGGAGCACCGGAAGTTCCTAATCGGACTCGAGAAGTTAGGAAAGGGTGACTGGAGAGGCATCTCTAGGAATTATGTGACCACAAGAACCCCAACCCAAGTTGCAAGTCATGCTCAGAAGTATTTTCTCAGGCAAGCAAGCCTCACCAAAAAGAAGCGACGTTCTAGCCTCTTCGATATGTTTGGGAGCAGCAACAATATAAATATGACGACTTATGATCCAATTCCTACTCAACGTGACAACATTATTCATGGTGACTTGGCCATTGATACCAGCAAACTGCCTCCGCTTCAACGTAGCACTGCAGCAAAAAATCTAAAATCAGATCACAATCAAAAACCTCAAAGCGGCAGGACTACTACTCAGCAGCTGCCGGCTTGGATTTACGGGTTGATCGATTCCCAGATGAAATCGAGTTCATCTTCTAGTGAAGCGTCAGTGGTACCGGATCTAGAGCTCACGCTTGCCGCGCCAACTAGTCCTAATTTGGAACAAAAAAATAGATCATCCCCAACCCCAGCAGGCCCCCTCCTTAATCTTGGAAGGATTAGTGTCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

320

Amino Acids

34.92

Weight (kDa)

9.76

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 129 - 175 2.6e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014417)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56840
fragaria_vesca FvH4_1g07170 FvH4_1g07170
malus_domestica MD02G1076300.v1.1 MD15G1204700.v1.1
prunus_persica Prupe.7G212300_v2.0.a1
pyrus_communis pycom02g06060 pycom15g18170
rosa_chinensis RchiOBHm_Chr2g0093071
rosa_laevigata RLG00000016365
rosa_roxburghii Rroxscaffold_2G00148540
rosa_rugosa Rorug02G0032200
rosa_samantha Rh2AG077700 Rh2BG079100 Rh2CG081500 Rh2DG076600
rosa_wichuraiana Rw2G006850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 238
Acc36I ACCTGC 1 cut(s) 59
Acc65I GGTACC 1 cut(s) 841
AccB1I GGYRCC 1 cut(s) 841
AccII CGCG 1 cut(s) 869
AciI CCGC 3 cut(s) 686, 747, 867
AclWI GGATC 2 cut(s) 611, 855
AcoI YGGCCR 1 cut(s) 660
AcsI RAATTY 1 cut(s) 58
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 1 cut(s) 843
AfiI CCNNNNNNNGG 2 cut(s) 372, 746
AgsI TTSAA 2 cut(s) 285, 692
AhlI ACTAGT 2 cut(s) 83, 875
AluBI AGCT 2 cut(s) 769, 856
AluI AGCT 2 cut(s) 769, 856
Alw21I GWGCWC 2 cut(s) 408, 858
Alw26I GTCTC 2 cut(s) 282, 356
AlwI GGATC 2 cut(s) 611, 855
AlwNI CAGNNNCTG 1 cut(s) 769
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 3 cut(s) 34, 660, 922
ApeKI GCWGC 5 cut(s) 314, 588, 704, 766, 769
ApoI RAATTY 1 cut(s) 58
Asp700I GAANNNNTTC 2 cut(s) 13, 209
Asp718I GGTACC 1 cut(s) 841
AspLEI GCGC 1 cut(s) 871
AspS9I GGNCC 2 cut(s) 48, 923
AsuHPI GGTGA 5 cut(s) 113, 122, 458, 535, 665
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 1 cut(s) 48
BalI TGGCCA 1 cut(s) 662
BanI GGYRCC 1 cut(s) 841
BanII GRGCYC 2 cut(s) 367, 858
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 2 cut(s) 408, 858
BbvI GCAGC 5 cut(s) 326, 600, 716, 756, 778
BccI CCATC 3 cut(s) 141, 268, 338
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 282, 356
BcuI ACTAGT 2 cut(s) 83, 875
BfaI CTAG 8 cut(s) 45, 75, 84, 465, 564, 825, 851, 876
BfmI CTRYAG 1 cut(s) 702
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 7 cut(s) 315, 589, 705, 748, 767, 770, 867
BlsI GCNGC 7 cut(s) 316, 590, 706, 749, 768, 771, 868
Bme18I GGWCC 1 cut(s) 48
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 48, 923
BmiI GGNNCC 2 cut(s) 843, 925
BmsI GCATC 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 472
Bsa29I ATCGAT 1 cut(s) 795
BsaBI GATNNNNATC 2 cut(s) 132, 729
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 294, 389
BsaWI WCCGGW 2 cut(s) 408, 844
Bsc4I CCNNNNNNNGG 2 cut(s) 372, 746
Bse118I RCCGGY 1 cut(s) 772
Bse1I ACTGG 1 cut(s) 455
Bse8I GATNNNNATC 2 cut(s) 132, 729
BseCI ATCGAT 1 cut(s) 795
BseDI CCNNGG 2 cut(s) 294, 389
BseGI GGATG 2 cut(s) 304, 905
BseJI GATNNNNATC 2 cut(s) 132, 729
BseLI CCNNNNNNNGG 2 cut(s) 372, 746
BseMII CTCAG 3 cut(s) 527, 541, 776
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 5 cut(s) 326, 600, 716, 756, 778
BseYI CCCAGC 1 cut(s) 916
BsgI GTGCAG 2 cut(s) 37, 333
Bsh1236I CGCG 1 cut(s) 869
BshFI GGCC 3 cut(s) 36, 662, 924
BshNI GGYRCC 1 cut(s) 841
BshVI ATCGAT 1 cut(s) 795
BsiHKAI GWGCWC 2 cut(s) 408, 858
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 3 cut(s) 409, 773, 845
BslI CCNNNNNNNGG 2 cut(s) 372, 746
BsmAI GTCTC 2 cut(s) 282, 356
BsnI GGCC 3 cut(s) 36, 662, 924
Bso31I GGTCTC 1 cut(s) 356
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 3 cut(s) 367, 408, 858
Bsp143I GATC 6 cut(s) 127, 616, 724, 792, 847, 902
Bsp19I CCATGG 2 cut(s) 294, 389
BspACI CCGC 3 cut(s) 686, 747, 867
BspANI GGCC 3 cut(s) 36, 662, 924
BspCNI CTCAG 3 cut(s) 526, 540, 775
BspDI ATCGAT 1 cut(s) 795
BspFNI CGCG 1 cut(s) 869
BspLI GGNNCC 2 cut(s) 843, 925
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 1 cut(s) 59
BspPI GGATC 2 cut(s) 611, 855
BspQI GCTCTTC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 841
BspTNI GGTCTC 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 772
BsrI ACTGG 1 cut(s) 455
BssAI RCCGGY 1 cut(s) 772
BssECI CCNNGG 2 cut(s) 294, 389
BssMI GATC 6 cut(s) 127, 616, 724, 792, 847, 902
BssT1I CCWWGG 2 cut(s) 294, 389
Bst4CI ACNGT 2 cut(s) 167, 350
Bst6I CTCTTC 5 cut(s) 110, 253, 274, 393, 575
BstAPI GCANNNNNTGC 2 cut(s) 222, 509
BstC8I GCNNGC 6 cut(s) 227, 534, 538, 774, 864, 922
BstDEI CTNAG 3 cut(s) 513, 527, 762
BstDSI CCRYGG 2 cut(s) 294, 389
BstF5I GGATG 2 cut(s) 304, 905
BstFNI CGCG 1 cut(s) 869
BstHHI GCGC 1 cut(s) 871
BstKTI GATC 6 cut(s) 130, 619, 727, 795, 850, 905
BstMAI GTCTC 2 cut(s) 282, 356
BstMBI GATC 6 cut(s) 127, 616, 724, 792, 847, 902
BstMWI GCNNNNNNNGC 4 cut(s) 222, 323, 509, 868
BstSFI CTRYAG 1 cut(s) 702
BstUI CGCG 1 cut(s) 869
BstV1I GCAGC 5 cut(s) 326, 600, 716, 756, 778
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 847
BstYI RGATCY 1 cut(s) 847
Bsu15I ATCGAT 1 cut(s) 795
BsuRI GGCC 3 cut(s) 36, 662, 924
BsuTUI ATCGAT 1 cut(s) 795
BtgI CCRYGG 2 cut(s) 294, 389
BtsCI GGATG 2 cut(s) 304, 905
BtsI GCAGTG 1 cut(s) 699
BtsIMutI CAGTG 2 cut(s) 699, 843
BveI ACCTGC 1 cut(s) 59
Cac8I GCNNGC 6 cut(s) 227, 534, 538, 774, 864, 922
CaiI CAGNNNCTG 1 cut(s) 769
CfoI GCGC 1 cut(s) 871
Cfr10I RCCGGY 1 cut(s) 772
Cfr13I GGNCC 2 cut(s) 48, 923
ClaI ATCGAT 1 cut(s) 795
CseI GACGC 1 cut(s) 822
Csp6I GTAC 1 cut(s) 842
CviAII CATG 9 cut(s) 125, 160, 185, 193, 199, 295, 390, 509, 650
CviQI GTAC 1 cut(s) 842
DdeI CTNAG 3 cut(s) 513, 527, 762
DpnI GATC 6 cut(s) 129, 618, 726, 794, 849, 904
DpnII GATC 6 cut(s) 127, 616, 724, 792, 847, 902
DraIII CACNNNGTG 1 cut(s) 23
DrdI GACNNNNNNGTC 1 cut(s) 238
DseDI GACNNNNNNGTC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 660
Eam1104I CTCTTC 5 cut(s) 110, 253, 274, 393, 575
EarI CTCTTC 5 cut(s) 110, 253, 274, 393, 575
Ecl136II GAGCTC 1 cut(s) 856
Eco130I CCWWGG 2 cut(s) 294, 389
Eco24I GRGCYC 2 cut(s) 367, 858
Eco31I GGTCTC 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 856
Eco88I CYCGRG 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 856
EcoO109I RGGNCCY 2 cut(s) 48, 923
EcoT14I CCWWGG 2 cut(s) 294, 389
EcoT38I GRGCYC 2 cut(s) 367, 858
ErhI CCWWGG 2 cut(s) 294, 389
FaeI CATG 9 cut(s) 128, 163, 188, 196, 202, 298, 393, 512, 653
FatI CATG 9 cut(s) 124, 159, 184, 192, 198, 294, 389, 508, 649
FauNDI CATATG 1 cut(s) 356
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 7 cut(s) 315, 589, 705, 748, 767, 770, 867
FokI GGATG 2 cut(s) 311, 892
FriOI GRGCYC 2 cut(s) 367, 858
Fsp4HI GCNGC 7 cut(s) 315, 589, 705, 748, 767, 770, 867
FspBI CTAG 8 cut(s) 45, 75, 84, 465, 564, 825, 851, 876
GlaI GCGC 1 cut(s) 870
GluI GCNGC 7 cut(s) 315, 589, 705, 748, 767, 770, 867
GsaI CCCAGC 1 cut(s) 920
GsuI CTGGAG 1 cut(s) 472
HaeIII GGCC 3 cut(s) 36, 662, 924
HapII CCGG 3 cut(s) 409, 773, 845
HgaI GACGC 1 cut(s) 822
HhaI GCGC 1 cut(s) 871
Hin1II CATG 9 cut(s) 128, 163, 188, 196, 202, 298, 393, 512, 653
Hin6I GCGC 1 cut(s) 869
HinP1I GCGC 1 cut(s) 869
HinfI GANTC 2 cut(s) 426, 797
HpaII CCGG 3 cut(s) 409, 773, 845
HphI GGTGA 5 cut(s) 113, 122, 458, 535, 665
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 5 cut(s) 65, 346, 425, 516, 724
Hpy188III TCNNGA 4 cut(s) 142, 285, 430, 851
Hpy8I GTNNAC 1 cut(s) 17
Hpy99I CGWCG 3 cut(s) 241, 350, 561
HpyAV CCTTC 3 cut(s) 291, 373, 936
HpyCH4III ACNGT 2 cut(s) 167, 350
HpyCH4IV ACGT 5 cut(s) 30, 236, 559, 634, 694
HpyCH4V TGCA 4 cut(s) 54, 314, 503, 704
HpyF10VI GCNNNNNNNGC 4 cut(s) 222, 323, 509, 868
HpyF3I CTNAG 3 cut(s) 513, 527, 762
HpySE526I ACGT 5 cut(s) 30, 236, 559, 634, 694
Hsp92II CATG 9 cut(s) 128, 163, 188, 196, 202, 298, 393, 512, 653
HspAI GCGC 1 cut(s) 869
KpnI GGTACC 1 cut(s) 845
KroI GCCGGC 1 cut(s) 772
KroNI GCCGGC 1 cut(s) 774
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 6 cut(s) 127, 616, 724, 792, 847, 902
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 2 cut(s) 403, 585
Lsp1109I GCAGC 5 cut(s) 326, 600, 716, 756, 778
LweI GCATC 1 cut(s) 468
MaeI CTAG 8 cut(s) 45, 75, 84, 465, 564, 825, 851, 876
MaeII ACGT 5 cut(s) 30, 236, 559, 634, 694
MaeIII GTNAC 5 cut(s) 446, 475, 635, 653, 952
MalI GATC 6 cut(s) 129, 618, 726, 794, 849, 904
MboI GATC 6 cut(s) 127, 616, 724, 792, 847, 902
MflI RGATCY 1 cut(s) 847
MhlI GDGCHC 3 cut(s) 367, 408, 858
MlsI TGGCCA 1 cut(s) 662
MluCI AATT 5 cut(s) 58, 169, 469, 621, 883
MluNI TGGCCA 1 cut(s) 662
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 3 cut(s) 73, 139, 369
Mox20I TGGCCA 1 cut(s) 662
MroNI GCCGGC 1 cut(s) 772
MroXI GAANNNNTTC 2 cut(s) 13, 209
MscI TGGCCA 1 cut(s) 662
MseI TTAA 1 cut(s) 933
MslI CAYNNNNRTG 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 769
MspI CCGG 3 cut(s) 409, 773, 845
MvnI CGCG 1 cut(s) 869
MwoI GCNNNNNNNGC 4 cut(s) 222, 323, 509, 868
NaeI GCCGGC 1 cut(s) 774
NcoI CCATGG 2 cut(s) 294, 389
NdeI CATATG 1 cut(s) 356
NdeII GATC 6 cut(s) 127, 616, 724, 792, 847, 902
NgoMIV GCCGGC 1 cut(s) 772
NlaIII CATG 9 cut(s) 128, 163, 188, 196, 202, 298, 393, 512, 653
NlaIV GGNNCC 2 cut(s) 843, 925
NmeAIII GCCGAG 1 cut(s) 386
NmuCI GTSAC 5 cut(s) 446, 475, 635, 653, 952
PaeR7I CTCGAG 1 cut(s) 428
PciSI GCTCTTC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 792
PdiI GCCGGC 1 cut(s) 774
PdmI GAANNNNTTC 2 cut(s) 13, 209
PfeI GAWTC 1 cut(s) 797
PflFI GACNNNGTC 1 cut(s) 235
PkrI GCNGC 7 cut(s) 316, 590, 706, 749, 768, 771, 868
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
PpuMI RGGWCCY 1 cut(s) 48
Psp124BI GAGCTC 1 cut(s) 858
Psp5II RGGWCCY 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 916
PspN4I GGNNCC 2 cut(s) 843, 925
PspPI GGNCC 2 cut(s) 48, 923
PspPPI RGGWCCY 1 cut(s) 48
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 769
PsuI RGATCY 1 cut(s) 847
PsyI GACNNNGTC 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 769
RsaI GTAC 1 cut(s) 843
RsaNI GTAC 1 cut(s) 842
RseI CAYNNNNRTG 1 cut(s) 197
SacI GAGCTC 1 cut(s) 858
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 933
SatI GCNGC 7 cut(s) 315, 589, 705, 748, 767, 770, 867
Sau3AI GATC 6 cut(s) 127, 616, 724, 792, 847, 902
Sau96I GGNCC 2 cut(s) 48, 923
SchI GAGTC 1 cut(s) 420
SduI GDGCHC 3 cut(s) 367, 408, 858
SetI ASST 9 cut(s) 33, 53, 239, 562, 637, 697, 742, 771, 858
SfaNI GCATC 1 cut(s) 468
SfcI CTRYAG 1 cut(s) 702
Sfr274I CTCGAG 1 cut(s) 428
SinI GGWCC 1 cut(s) 48
SlaI CTCGAG 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
SpeI ACTAGT 2 cut(s) 83, 875
Sse9I AATT 5 cut(s) 58, 169, 469, 621, 883
SsiI CCGC 3 cut(s) 686, 747, 867
SspI AATATT 1 cut(s) 307
SspMI CTAG 8 cut(s) 45, 75, 84, 465, 564, 825, 851, 876
SstI GAGCTC 1 cut(s) 858
StyI CCWWGG 2 cut(s) 294, 389
TaaI ACNGT 2 cut(s) 167, 350
TaiI ACGT 5 cut(s) 33, 239, 562, 637, 697
TaqI TCGA 4 cut(s) 429, 573, 795, 812
TasI AATT 5 cut(s) 58, 169, 469, 621, 883
TauI GCSGC 2 cut(s) 750, 869
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 1 cut(s) 933
Tru9I TTAA 1 cut(s) 933
TscAI CASTG 2 cut(s) 706, 843
TseFI GTSAC 5 cut(s) 446, 475, 635, 653, 952
TseI GCWGC 5 cut(s) 314, 588, 704, 766, 769
Tsp45I GTSAC 5 cut(s) 446, 475, 635, 653, 952
TspDTI ATGAA 8 cut(s) 176, 215, 240, 261, 315, 638, 807, 821
TspGWI ACGGA 2 cut(s) 233, 410
TspRI CASTG 2 cut(s) 706, 843
Tth111I GACNNNGTC 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 48
XapI RAATTY 1 cut(s) 58
XbaI TCTAGA 1 cut(s) 850
XhoI CTCGAG 1 cut(s) 428
XmnI GAANNNNTTC 2 cut(s) 13, 209
XspI CTAG 8 cut(s) 45, 75, 84, 465, 564, 825, 851, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.