pycom15g21690

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0006436
Physical Location & Seq
Reverse (-)
15720689 .. 15721131
443 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGGAAATTGTCAAAAACAGAAAAGTAGACTTGTCACACCTTAAGGTCTTTGGATGCATTTGTTTTGTCCATGTTCAGTCCTTGCATCGAGACAAACTTGACCCTAGGGCAACCAAATGCATTTTCCTTGGTTACTCATCCACACAAAAAGGATACAAATGTTACAATCCACAATTTAAGAGATTAATTGTTTCCAAGGATGTTAGATTTCATGAAACTAACCCTTATTACAGCAAATCTCTGGATAGTACAAGTGAAGGGGAATATTGCTTGGATCTGTTTCCATTGCCAAGAACTGAGACCCTTGCCACTGAAGTCACTCAACCTAATGCAATGGTGCCTGTACATCACACAAAGTTCCCCGCTGAAATTGACAACCCATATTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 rve

Protein Analysis

131

Amino Acids

15.0

Weight (kDa)

8.51

Isoelectric Point (pI)

24.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 19 - 80 8.7e-28 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 337
AccI GTMKAC 1 cut(s) 27
AciI CCGC 1 cut(s) 363
AclWI GGATC 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 2 cut(s) 250, 345
AflII CTTAAG 1 cut(s) 41
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
Alw26I GTCTC 2 cut(s) 84, 293
AlwI GGATC 1 cut(s) 282
AseI ATTAAT 1 cut(s) 185
AspA2I CCTAGG 1 cut(s) 104
AvrII CCTAGG 1 cut(s) 104
BaeI ACNNNNGTAYC 2 cut(s) 145, 178
BanI GGYRCC 1 cut(s) 337
BciVI GTATCC 1 cut(s) 146
BcoDI GTCTC 2 cut(s) 84, 293
BfaI CTAG 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 41
BfuI GTATCC 1 cut(s) 146
BlnI CCTAGG 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 339
BmsI GCATC 2 cut(s) 44, 94
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 3 cut(s) 104, 127, 195
Bse3DI GCAATG 2 cut(s) 284, 339
BseDI CCNNGG 3 cut(s) 104, 127, 195
BseGI GGATG 3 cut(s) 59, 137, 205
BseMI GCAATG 2 cut(s) 284, 339
BseMII CTCAG 1 cut(s) 288
BshNI GGYRCC 1 cut(s) 337
BsmAI GTCTC 2 cut(s) 84, 293
Bso31I GGTCTC 1 cut(s) 293
Bsp1407I TGTACA 1 cut(s) 343
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 1 cut(s) 363
BspCNI CTCAG 1 cut(s) 289
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 1 cut(s) 282
BspT107I GGYRCC 1 cut(s) 337
BspTI CTTAAG 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 293
BsrDI GCAATG 2 cut(s) 284, 339
BsrGI TGTACA 1 cut(s) 343
BssECI CCNNGG 3 cut(s) 104, 127, 195
BssMI GATC 1 cut(s) 274
BssT1I CCWWGG 3 cut(s) 104, 127, 195
BstAFI CTTAAG 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 343
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 3 cut(s) 59, 137, 205
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 2 cut(s) 84, 293
BstMBI GATC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuI GTATCC 1 cut(s) 146
BtsCI GGATG 3 cut(s) 59, 137, 205
BtsIMutI CAGTG 1 cut(s) 309
CciI TCATGA 1 cut(s) 211
Csp6I GTAC 2 cut(s) 249, 344
CviAII CATG 2 cut(s) 71, 212
CviQI GTAC 2 cut(s) 249, 344
DdeI CTNAG 1 cut(s) 297
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eco130I CCWWGG 3 cut(s) 104, 127, 195
Eco31I GGTCTC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 333
EcoT14I CCWWGG 3 cut(s) 104, 127, 195
EcoT22I ATGCAT 2 cut(s) 59, 122
ErhI CCWWGG 3 cut(s) 104, 127, 195
FaeI CATG 2 cut(s) 74, 215
FaiI YATR 3 cut(s) 72, 213, 382
FatI CATG 2 cut(s) 70, 211
FauI CCCGC 1 cut(s) 370
FblI GTMKAC 1 cut(s) 27
FokI GGATG 3 cut(s) 66, 124, 212
FspBI CTAG 1 cut(s) 105
Hin1II CATG 2 cut(s) 74, 215
Hpy166II GTNNAC 1 cut(s) 28
Hpy188III TCNNGA 4 cut(s) 89, 212, 242, 390
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 251
HpyCH4V TGCA 4 cut(s) 57, 85, 120, 332
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 2 cut(s) 74, 215
Kzo9I GATC 1 cut(s) 274
LpnPI CCDG 2 cut(s) 227, 354
LweI GCATC 2 cut(s) 44, 94
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 4 cut(s) 33, 131, 161, 316
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MflI RGATCY 1 cut(s) 274
MluCI AATT 4 cut(s) 6, 173, 186, 369
Mph1103I ATGCAT 2 cut(s) 59, 122
MseI TTAA 3 cut(s) 42, 177, 185
MspA1I CMGCKG 1 cut(s) 365
MspCI CTTAAG 1 cut(s) 41
NdeII GATC 1 cut(s) 274
NlaIII CATG 2 cut(s) 74, 215
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 2 cut(s) 33, 316
NsiI ATGCAT 2 cut(s) 59, 122
PagI TCATGA 1 cut(s) 211
PshBI ATTAAT 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 339
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 2 cut(s) 250, 345
RsaNI GTAC 2 cut(s) 249, 344
SaqAI TTAA 3 cut(s) 42, 177, 185
Sau3AI GATC 1 cut(s) 274
SetI ASST 3 cut(s) 42, 48, 328
SfaNI GCATC 2 cut(s) 44, 94
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 4 cut(s) 6, 173, 186, 369
SsiI CCGC 1 cut(s) 363
SspI AATATT 1 cut(s) 266
SspMI CTAG 1 cut(s) 105
StyI CCWWGG 3 cut(s) 104, 127, 195
TaqI TCGA 1 cut(s) 88
TasI AATT 4 cut(s) 6, 173, 186, 369
TatI WGTACW 2 cut(s) 248, 343
Tru1I TTAA 3 cut(s) 42, 177, 185
Tru9I TTAA 3 cut(s) 42, 177, 185
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 2 cut(s) 33, 316
Tsp45I GTSAC 2 cut(s) 33, 316
TspDTI ATGAA 2 cut(s) 200, 228
TspRI CASTG 1 cut(s) 316
Vha464I CTTAAG 1 cut(s) 41
VspI ATTAAT 1 cut(s) 185
XmaJI CCTAGG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 1 cut(s) 105
Zsp2I ATGCAT 2 cut(s) 59, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.