pycom15g21750

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013454
Physical Location & Seq
Forward (+)
15791527 .. 15792259
733 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 573 bp
ATGTCAGTCACCGAAGAAGCTCAAGCACCCGCTGTGGATGCCCCACCGCCGGAGGAGGCTCCGGTGACGGAGGAGCCCAAGAAGGAAGAAAAGCCAACTAGGCAGACGAAACCCAGGACTCCAAAAGAGAGAAAGCCTGCACAGCCAAAACCCAAAACCAAAACCGCCGCTCATCCTCCATACTTTCAGATGATAATGGAAGCACTTATGGCGCTGAACGAGAAGAGCGGGTCGAGTCCGTACGCCATAGCAAAGCACATGGAGGAGAAGCACAAGGCGGTGCTCCCGGCGAACTTCAGGAAGACTCTGGCGCTGCAGCTGAAGAACTCGGCGGCAAGAGGAAAGTTGATCAAGATCAGGGCCTCGTACAAGCTCTCCGAGGCGGGCAAGAAGGAGAAATCGACAGCCAAAACAAGCGCCGTTTCGAAACCAAAATCGGAGAAGAAGACCAAAACGACCTCCTCTGCTAAGAAGCCCGGGAAAAAGAACAAGATGTCAACCGCAGCGAAGCCCAAGCAGCCCAAGTCGATCAAGAGCTCTGCTGCTAAGAAATCGAAGAAGTCTGCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

191

Amino Acids

20.7

Weight (kDa)

10.27

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 58 - 122 6.3e-15 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18050 AT2G18050
fragaria_vesca FvH4_1g12030
malus_domestica MD02G1134400.v1.1 MD15G1247400.v1.1
prunus_persica Prupe.7G166400_v2.0.a1
pyrus_communis pycom02g10600 pycom15g21750
rosa_chinensis RchiOBHm_Chr2g0099661
rosa_laevigata RLG00000016902
rosa_multiflora Rmu_sc0005120.1_g000018
rosa_roxburghii Rroxscaffold_2G00142870
rosa_rugosa Rorug02G0081800
rosa_samantha Rh2AG131400 Rh2BG134700 Rh2CG135600 Rh2DG136100
rosa_wichuraiana Rw2G010170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 170, 228
AciI CCGC 9 cut(s) 30, 47, 165, 168, 228, 278, 332, 383, 501
AcuI CTGAAG 2 cut(s) 280, 341
AfaI GTAC 2 cut(s) 242, 368
AfiI CCNNNNNNNGG 1 cut(s) 49
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 4 cut(s) 20, 319, 373, 537
AluI AGCT 4 cut(s) 20, 319, 373, 537
Alw21I GWGCWC 2 cut(s) 285, 539
Ama87I CYCGRG 1 cut(s) 476
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 5 cut(s) 313, 316, 503, 517, 542
AspLEI GCGC 3 cut(s) 214, 313, 419
AspS9I GGNCC 1 cut(s) 360
AsuC2I CCSGG 3 cut(s) 287, 477, 478
AsuHPI GGTGA 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 425
AvaI CYCGRG 1 cut(s) 476
BanII GRGCYC 2 cut(s) 78, 539
BbsI GAAGAC 2 cut(s) 308, 452
Bbv12I GWGCWC 2 cut(s) 285, 539
BbvI GCAGC 5 cut(s) 300, 328, 515, 529, 529
BceAI ACGGC 1 cut(s) 404
BciT130I CCWGG 1 cut(s) 115
BclI TGATCA 1 cut(s) 348
BcnI CCSGG 3 cut(s) 287, 477, 478
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 314
BfoI RGCGCY 3 cut(s) 215, 314, 420
BglI GCCNNNNNGGC 1 cut(s) 100
BisI GCNGC 7 cut(s) 168, 314, 317, 333, 504, 518, 543
BlsI GCNGC 7 cut(s) 169, 315, 318, 334, 505, 519, 544
Bme1390I CCNGG 4 cut(s) 115, 287, 477, 478
BmeT110I CYCGRG 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 360
BmiI GGNNCC 2 cut(s) 60, 75
BmrFI CCNGG 4 cut(s) 115, 287, 477, 478
BmsI GCATC 1 cut(s) 28
BpiI GAAGAC 2 cut(s) 308, 452
Bpu14I TTCGAA 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 6
BpuMI CCSGG 3 cut(s) 287, 477, 478
BsaBI GATNNNNATC 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 113, 378, 476
BsaWI WCCGGW 1 cut(s) 61
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse8I GATNNNNATC 1 cut(s) 353
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 3 cut(s) 113, 378, 476
BseGI GGATG 2 cut(s) 43, 172
BseJI GATNNNNATC 1 cut(s) 353
BseLI CCNNNNNNNGG 1 cut(s) 49
BseRI GAGGAG 4 cut(s) 68, 86, 278, 451
BseXI GCAGC 5 cut(s) 300, 328, 515, 529, 529
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 1 cut(s) 362
BsiHKAI GWGCWC 2 cut(s) 285, 539
BsiHKCI CYCGRG 1 cut(s) 476
BsiSI CCGG 4 cut(s) 50, 62, 287, 477
BsiWI CGTACG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 49
BsnI GGCC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 476
Bsp119I TTCGAA 1 cut(s) 425
Bsp1286I GDGCHC 3 cut(s) 78, 285, 539
Bsp143I GATC 3 cut(s) 348, 354, 528
BspACI CCGC 9 cut(s) 30, 47, 165, 168, 228, 278, 332, 383, 501
BspANI GGCC 1 cut(s) 362
BspLI GGNNCC 2 cut(s) 60, 75
BspMAI CTGCAG 1 cut(s) 318
BspQI GCTCTTC 1 cut(s) 218
BspT104I TTCGAA 1 cut(s) 425
BsrBI CCGCTC 2 cut(s) 170, 228
BssECI CCNNGG 3 cut(s) 113, 378, 476
BssMI GATC 3 cut(s) 348, 354, 528
Bst2UI CCWGG 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 218
BstBI TTCGAA 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 138, 385
BstDEI CTNAG 2 cut(s) 468, 546
BstF5I GGATG 2 cut(s) 43, 172
BstH2I RGCGCY 3 cut(s) 215, 314, 420
BstHHI GCGC 3 cut(s) 214, 313, 419
BstKTI GATC 3 cut(s) 351, 357, 531
BstMBI GATC 3 cut(s) 348, 354, 528
BstMWI GCNNNNNNNGC 5 cut(s) 38, 100, 142, 209, 517
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 4 cut(s) 113, 285, 475, 476
BstSFI CTRYAG 1 cut(s) 314
BstV1I GCAGC 5 cut(s) 300, 328, 515, 529, 529
BstV2I GAAGAC 2 cut(s) 308, 452
BsuRI GGCC 1 cut(s) 362
BtsCI GGATG 2 cut(s) 43, 172
Cac8I GCNNGC 2 cut(s) 138, 385
CfoI GCGC 3 cut(s) 214, 313, 419
Cfr13I GGNCC 1 cut(s) 360
Cfr9I CCCGGG 1 cut(s) 476
Csp6I GTAC 2 cut(s) 241, 367
CviAII CATG 1 cut(s) 259
CviQI GTAC 2 cut(s) 241, 367
DdeI CTNAG 2 cut(s) 468, 546
DpnI GATC 3 cut(s) 350, 356, 530
DpnII GATC 3 cut(s) 348, 354, 528
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 537
Eco24I GRGCYC 2 cut(s) 78, 539
Eco53kI GAGCTC 1 cut(s) 537
Eco57I CTGAAG 2 cut(s) 280, 341
Eco88I CYCGRG 1 cut(s) 476
EcoICRI GAGCTC 1 cut(s) 537
EcoO109I RGGNCCY 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 113
EcoT38I GRGCYC 2 cut(s) 78, 539
FaeI CATG 1 cut(s) 262
FaiI YATR 4 cut(s) 181, 209, 248, 260
FatI CATG 1 cut(s) 258
FauI CCCGC 3 cut(s) 37, 221, 376
FbaI TGATCA 1 cut(s) 348
Fnu4HI GCNGC 7 cut(s) 168, 314, 317, 333, 504, 518, 543
FokI GGATG 2 cut(s) 50, 159
FriOI GRGCYC 2 cut(s) 78, 539
Fsp4HI GCNGC 7 cut(s) 168, 314, 317, 333, 504, 518, 543
FspBI CTAG 1 cut(s) 99
GlaI GCGC 3 cut(s) 213, 312, 418
GluI GCNGC 7 cut(s) 168, 314, 317, 333, 504, 518, 543
HaeII RGCGCY 3 cut(s) 215, 314, 420
HaeIII GGCC 1 cut(s) 362
HapII CCGG 4 cut(s) 50, 62, 287, 477
HhaI GCGC 3 cut(s) 214, 313, 419
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 3 cut(s) 212, 311, 417
HinP1I GCGC 3 cut(s) 212, 311, 417
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HinfI GANTC 3 cut(s) 118, 235, 304
HpaII CCGG 4 cut(s) 50, 62, 287, 477
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 3 cut(s) 189, 379, 439
Hpy188III TCNNGA 3 cut(s) 298, 352, 532
Hpy8I GTNNAC 1 cut(s) 498
HpyAV CCTTC 2 cut(s) 76, 385
HpyCH4V TGCA 2 cut(s) 140, 316
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 100, 142, 209, 517
HpyF3I CTNAG 2 cut(s) 468, 546
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 3 cut(s) 212, 311, 417
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 3 cut(s) 348, 354, 528
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 3 cut(s) 64, 73, 288
Lsp1109I GCAGC 5 cut(s) 300, 328, 515, 529, 529
LweI GCATC 1 cut(s) 28
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 2 cut(s) 7, 64
MalI GATC 3 cut(s) 350, 356, 530
MbiI CCGCTC 2 cut(s) 170, 228
MboI GATC 3 cut(s) 348, 354, 528
MboII GAAGA 8 cut(s) 26, 98, 235, 313, 334, 454, 457, 568
MhlI GDGCHC 3 cut(s) 78, 285, 539
MlyI GAGTC 3 cut(s) 112, 244, 298
MspA1I CMGCKG 2 cut(s) 32, 319
MspI CCGG 4 cut(s) 50, 62, 287, 477
MspR9I CCNGG 4 cut(s) 115, 287, 477, 478
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 5 cut(s) 38, 100, 142, 209, 517
NciI CCSGG 3 cut(s) 287, 477, 478
NdeII GATC 3 cut(s) 348, 354, 528
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 2 cut(s) 60, 75
NmeAIII GCCGAG 1 cut(s) 308
NmuCI GTSAC 2 cut(s) 7, 64
NspV TTCGAA 1 cut(s) 425
PciSI GCTCTTC 1 cut(s) 218
Pfl23II CGTACG 1 cut(s) 240
PkrI GCNGC 7 cut(s) 169, 315, 318, 334, 505, 519, 544
PleI GAGTC 3 cut(s) 112, 243, 298
PpsI GAGTC 3 cut(s) 112, 243, 298
Psp124BI GAGCTC 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspLI CGTACG 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 60, 75
PspPI GGNCC 1 cut(s) 360
PstI CTGCAG 1 cut(s) 318
PvuII CAGCTG 1 cut(s) 319
RsaI GTAC 2 cut(s) 242, 368
RsaNI GTAC 2 cut(s) 241, 367
SacI GAGCTC 1 cut(s) 539
SapI GCTCTTC 1 cut(s) 218
SatI GCNGC 7 cut(s) 168, 314, 317, 333, 504, 518, 543
Sau3AI GATC 3 cut(s) 348, 354, 528
Sau96I GGNCC 1 cut(s) 360
SchI GAGTC 3 cut(s) 112, 244, 298
ScrFI CCNGG 4 cut(s) 115, 287, 477, 478
SduI GDGCHC 3 cut(s) 78, 285, 539
SetI ASST 5 cut(s) 22, 321, 375, 461, 539
SfaNI GCATC 1 cut(s) 28
SfcI CTRYAG 1 cut(s) 314
SfuI TTCGAA 1 cut(s) 425
SmaI CCCGGG 1 cut(s) 478
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
SsiI CCGC 9 cut(s) 30, 47, 165, 168, 228, 278, 332, 383, 501
SspMI CTAG 1 cut(s) 99
SstI GAGCTC 1 cut(s) 539
StyD4I CCNGG 4 cut(s) 113, 285, 475, 476
TaqI TCGA 5 cut(s) 233, 401, 425, 527, 554
TauI GCSGC 2 cut(s) 170, 335
TseFI GTSAC 2 cut(s) 7, 64
TseI GCWGC 5 cut(s) 313, 316, 503, 517, 542
Tsp45I GTSAC 2 cut(s) 7, 64
TspGWI ACGGA 2 cut(s) 83, 228
TspMI CCCGGG 1 cut(s) 476
XmaI CCCGGG 1 cut(s) 476
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.