Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005004

Physical Location & Seq

Genomic Coordinates Reverse (-)

16000015 .. 16000620

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGATTCTCTTCTGCAATCCTTGCAACCCTTGCAATCCATGACACCACTCTTGCTCATAATCCCACTCCTATTTCTCCTCCCTCTAATTTTCCGTTTCCGGCGACCACCACCATACCCGCCCGGCCCCAAAGGCCTACCCCTTATTGGAAACATGTTATTGATGGACCAACTAACTCACCGGGGCCTCGCCAAGCTGGCCAAGAAATACGGCGGCATATTCCACCTCCGCATGGGGTTTTTACACATGGTTGCGATTTCCAACCCTGACGTGGCACGACAAGTACTTCAAGTCCAAGACAACATCTTCTCCAACCGCCCGGCCACCATCGCCATCAGCTACCTCACCTACGACCGCGCTGACATGGCCTTCGCGCACTACGGGCCCTTCTGGCGCCAGATGCGTAAGCTCTGCGTCATGAAGCTCTTTAGTCGCAAACGCGCCGAGTCCTGGGAGTCTGTCAGGGACGAAGTGGACTCGGCGGTTAGGATCGATCACAGTTCATGTTGGTTCGGCTGTAAACATCGGAGAGTTGGTTTTTTCGCTCACGAAAAATATTATTTATCGGGCGGCGTTCGGCACGAGCTCTCAGGAAGGGCAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010224 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

202

Amino Acids

23.08

Weight (kDa)

10.11

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	40 - 158	1.2e-20	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36220
fragaria_vesca	FvH4_1g12210
malus_domestica	MD02G1136000.v1.1 MD15G1249600.v1.1
prunus_persica	Prupe.7G164600_v2.0.a1
pyrus_communis	pycom02g10730 pycom15g22000
rosa_chinensis	RchiOBHm_Chr2g0099701 RchiOBHm_Chr2g0099981
rosa_laevigata	RLG00000016909 RLG00000016927
rosa_multiflora	Rmu_co8406061.1_g000001 Rmu_sc0006209.1_g000001 Rmu_sc0008864.1_g000016 Rmu_sc0008864.1_g000017 Rmu_sc0013563.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142680 Rroxscaffold_2G00142820
rosa_rugosa	Rorug02G0082600 Rorug02G0084600
rosa_samantha	Rh2AG133600 Rh2BG135100 Rh2BG137100 Rh2CG136100 Rh2CG138600 Rh2DG136500 Rh2DG139000
rosa_wichuraiana	Rw2G010230 Rw2G010390 Rw2G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	393
AccII	CGCG	3 cut(s)	357, 374, 441
AciI	CCGC	7 cut(s)	119, 213, 229, 316, 355, 482, 570
AclWI	GGATC	1 cut(s)	497
AcoI	YGGCCR	2 cut(s)	198, 321
AcyI	GRCGYC	1 cut(s)	394
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	4 cut(s)	146, 232, 271, 450
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	290
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	449
AluBI	AGCT	5 cut(s)	196, 339, 409, 424, 586
AluI	AGCT	5 cut(s)	196, 339, 409, 424, 586
Alw21I	GWGCWC	1 cut(s)	588
AlwI	GGATC	1 cut(s)	497
AoxI	GGCC	7 cut(s)	124, 133, 184, 198, 321, 366, 383
ApaI	GGGCCC	1 cut(s)	387
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AspLEI	GCGC	4 cut(s)	359, 376, 396, 443
AspS9I	GGNCC	5 cut(s)	125, 166, 184, 383, 384
AsuC2I	CCSGG	3 cut(s)	123, 182, 320
AsuHPI	GGTGA	2 cut(s)	170, 337
AvaII	GGWCC	1 cut(s)	166
BaeGI	GKGCMC	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	393
BanII	GRGCYC	2 cut(s)	387, 588
BauI	CACGAG	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	588
BccI	CCATC	3 cut(s)	157, 335, 341
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	451
BcnI	CCSGG	3 cut(s)	123, 182, 320
BfoI	RGCGCY	1 cut(s)	397
BglI	GCCNNNNNGGC	3 cut(s)	132, 197, 391
BisI	GCNGC	2 cut(s)	214, 571
BlsI	GCNGC	2 cut(s)	215, 572
BmcAI	AGTACT	1 cut(s)	285
Bme1390I	CCNGG	4 cut(s)	123, 182, 320, 451
Bme18I	GGWCC	1 cut(s)	166
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	5 cut(s)	125, 166, 184, 383, 384
BmiI	GGNNCC	4 cut(s)	127, 185, 385, 395
BmrFI	CCNGG	4 cut(s)	123, 182, 320, 451
BmsI	GCATC	1 cut(s)	390
BpuMI	CCSGG	3 cut(s)	123, 182, 320
Bsa29I	ATCGAT	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	394
BsaJI	CCNNGG	2 cut(s)	181, 450
BsaXI	ACNNNNNCTCC	4 cut(s)	293, 323, 520, 550
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 232, 271, 450
BseBI	CCWGG	1 cut(s)	451
BseCI	ATCGAT	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	181, 450
BseLI	CCNNNNNNNGG	4 cut(s)	146, 232, 271, 450
BseMII	CTCAG	1 cut(s)	603
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	387
Bsh1236I	CGCG	3 cut(s)	357, 374, 441
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	7 cut(s)	126, 135, 186, 200, 323, 368, 385
BshNI	GGYRCC	1 cut(s)	393
BshVI	ATCGAT	1 cut(s)	492
BsiEI	CGRYCG	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	588
BsiSI	CCGG	4 cut(s)	100, 123, 181, 320
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	4 cut(s)	146, 232, 271, 450
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	7 cut(s)	126, 135, 186, 200, 323, 368, 385
Bsp120I	GGGCCC	1 cut(s)	383
Bsp1286I	GDGCHC	2 cut(s)	387, 588
Bsp143I	GATC	2 cut(s)	489, 493
BspACI	CCGC	7 cut(s)	119, 213, 229, 316, 355, 482, 570
BspANI	GGCC	7 cut(s)	126, 135, 186, 200, 323, 368, 385
BspCNI	CTCAG	1 cut(s)	602
BspDI	ATCGAT	1 cut(s)	492
BspFNI	CGCG	3 cut(s)	357, 374, 441
BspHI	TCATGA	1 cut(s)	417
BspLI	GGNNCC	4 cut(s)	127, 185, 385, 395
BspPI	GGATC	1 cut(s)	497
BspT107I	GGYRCC	1 cut(s)	393
BssECI	CCNNGG	2 cut(s)	181, 450
BssMI	GATC	2 cut(s)	489, 493
BssNI	GRCGYC	1 cut(s)	394
BssSI	CACGAG	1 cut(s)	581
Bst2BI	CACGAG	1 cut(s)	581
Bst2UI	CCWGG	1 cut(s)	451
Bst4CI	ACNGT	1 cut(s)	500
Bst6I	CTCTTC	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	394
BstAPI	GCANNNNNTGC	2 cut(s)	22, 31
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	589
BstFNI	CGCG	3 cut(s)	357, 374, 441
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	4 cut(s)	359, 376, 396, 443
BstKTI	GATC	2 cut(s)	492, 496
BstMBI	GATC	2 cut(s)	489, 493
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	9 cut(s)	22, 31, 132, 197, 329, 365, 382, 391, 400
BstNI	CCWGG	1 cut(s)	451
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	4 cut(s)	121, 180, 318, 449
BstSLI	GKGCMC	1 cut(s)	387
BstUI	CGCG	3 cut(s)	357, 374, 441
Bsu15I	ATCGAT	1 cut(s)	492
BsuRI	GGCC	7 cut(s)	126, 135, 186, 200, 323, 368, 385
BsuTUI	ATCGAT	1 cut(s)	492
BtgZI	GCGATG	1 cut(s)	313
BtrI	CACGTC	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	198
CciI	TCATGA	1 cut(s)	417
CfoI	GCGC	4 cut(s)	359, 376, 396, 443
Cfr13I	GGNCC	5 cut(s)	125, 166, 184, 383, 384
ClaI	ATCGAT	1 cut(s)	492
CseI	GACGC	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	7 cut(s)	40, 154, 232, 247, 364, 418, 504
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	1 cut(s)	589
DinI	GGCGCC	1 cut(s)	395
DpnI	GATC	2 cut(s)	491, 495
DpnII	GATC	2 cut(s)	489, 493
EaeI	YGGCCR	2 cut(s)	198, 321
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	586
Eco147I	AGGCCT	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	387, 588
Eco47I	GGWCC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	586
EcoICRI	GAGCTC	1 cut(s)	586
EcoO109I	RGGNCCY	2 cut(s)	184, 384
EcoRII	CCWGG	1 cut(s)	449
EcoT38I	GRGCYC	2 cut(s)	387, 588
EgeI	GGCGCC	1 cut(s)	395
EheI	GGCGCC	1 cut(s)	395
FaeI	CATG	7 cut(s)	43, 157, 235, 250, 367, 421, 507
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	7 cut(s)	39, 153, 231, 246, 363, 417, 503
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	214, 571
FriOI	GRGCYC	2 cut(s)	387, 588
Fsp4HI	GCNGC	2 cut(s)	214, 571
GlaI	GCGC	4 cut(s)	358, 375, 395, 442
GluI	GCNGC	2 cut(s)	214, 571
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	7 cut(s)	126, 135, 186, 200, 323, 368, 385
HapII	CCGG	4 cut(s)	100, 123, 181, 320
HgaI	GACGC	1 cut(s)	403
HhaI	GCGC	4 cut(s)	359, 376, 396, 443
Hin1I	GRCGYC	1 cut(s)	394
Hin1II	CATG	7 cut(s)	43, 157, 235, 250, 367, 421, 507
Hin6I	GCGC	4 cut(s)	357, 374, 394, 441
HinP1I	GCGC	4 cut(s)	357, 374, 394, 441
HinfI	GANTC	4 cut(s)	5, 446, 455, 476
HpaII	CCGG	4 cut(s)	100, 123, 181, 320
HphI	GGTGA	2 cut(s)	170, 337
Hpy166II	GTNNAC	2 cut(s)	475, 521
Hpy188I	TCNGA	1 cut(s)	528
Hpy188III	TCNNGA	3 cut(s)	418, 548, 591
Hpy8I	GTNNAC	2 cut(s)	475, 521
HpyAV	CCTTC	3 cut(s)	379, 397, 588
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	3 cut(s)	16, 25, 34
HpyF10VI	GCNNNNNNNGC	9 cut(s)	22, 31, 132, 197, 329, 365, 382, 391, 400
HpyF3I	CTNAG	1 cut(s)	589
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	394
Hsp92II	CATG	7 cut(s)	43, 157, 235, 250, 367, 421, 507
HspAI	GCGC	4 cut(s)	357, 374, 394, 441
KasI	GGCGCC	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	489, 493
LweI	GCATC	1 cut(s)	390
MaeII	ACGT	1 cut(s)	270
MalI	GATC	2 cut(s)	491, 495
MboI	GATC	2 cut(s)	489, 493
MboII	GAAGA	1 cut(s)	298
MhlI	GDGCHC	2 cut(s)	387, 588
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	1 cut(s)	87
MluNI	TGGCCA	1 cut(s)	200
Mly113I	GGCGCC	1 cut(s)	394
MlyI	GAGTC	3 cut(s)	455, 464, 470
MmeI	TCCRAC	2 cut(s)	285, 336
MnlI	CCTC	5 cut(s)	89, 93, 197, 236, 353
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	4 cut(s)	100, 123, 181, 320
MspR9I	CCNGG	4 cut(s)	123, 182, 320, 451
MvaI	CCWGG	1 cut(s)	451
MvnI	CGCG	3 cut(s)	357, 374, 441
MwoI	GCNNNNNNNGC	9 cut(s)	22, 31, 132, 197, 329, 365, 382, 391, 400
NarI	GGCGCC	1 cut(s)	394
NciI	CCSGG	3 cut(s)	123, 182, 320
NdeII	GATC	2 cut(s)	489, 493
NlaIII	CATG	7 cut(s)	43, 157, 235, 250, 367, 421, 507
NlaIV	GGNNCC	4 cut(s)	127, 185, 385, 395
NmeAIII	GCCGAG	2 cut(s)	458, 469
NspI	RCATGY	1 cut(s)	157
PagI	TCATGA	1 cut(s)	417
PceI	AGGCCT	1 cut(s)	135
PciI	ACATGT	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	215, 572
PleI	GAGTC	3 cut(s)	454, 463, 470
PluTI	GGCGCC	1 cut(s)	397
PpsI	GAGTC	3 cut(s)	454, 463, 470
PscI	ACATGT	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	588
Psp6I	CCWGG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	449
PspN4I	GGNNCC	4 cut(s)	127, 185, 385, 395
PspOMI	GGGCCC	1 cut(s)	383
PspPI	GGNCC	5 cut(s)	125, 166, 184, 383, 384
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	588
SatI	GCNGC	2 cut(s)	214, 571
Sau3AI	GATC	2 cut(s)	489, 493
Sau96I	GGNCC	5 cut(s)	125, 166, 184, 383, 384
ScaI	AGTACT	1 cut(s)	285
SchI	GAGTC	3 cut(s)	455, 464, 470
ScrFI	CCNGG	4 cut(s)	123, 182, 320, 451
SduI	GDGCHC	2 cut(s)	387, 588
SetI	ASST	9 cut(s)	198, 228, 273, 341, 345, 350, 411, 426, 588
SfaNI	GCATC	1 cut(s)	390
SfiI	GGCCNNNNNGGCC	1 cut(s)	132
SfoI	GGCGCC	1 cut(s)	395
SinI	GGWCC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	87
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	7 cut(s)	119, 213, 229, 316, 355, 482, 570
SspDI	GGCGCC	1 cut(s)	393
SspI	AATATT	1 cut(s)	557
SstI	GAGCTC	1 cut(s)	588
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	4 cut(s)	121, 180, 318, 449
TaaI	ACNGT	1 cut(s)	500
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	492
TasI	AATT	1 cut(s)	87
TatI	WGTACW	1 cut(s)	283
TauI	GCSGC	2 cut(s)	216, 573
TfiI	GAWTC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	434, 492
TspGWI	ACGGA	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	166
XceI	RCATGY	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
ZrmI	AGTACT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.