Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8406061.1

Orthogroup ID

OG0005004

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1266

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8406061.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atggactctcttatacaacaagccttacaacaacccgctcctattgcgcttctttccatgatccctgttctttttctccttggcgtattttttaggtcccgacggcgcttaccttatccgccgggacctaagggtctgcccatcatcggtaacatgctgatgatggaccagataacccaccgtggcctggccaaactagccaaacagtacggcggcatcttccacctccgcatggggttcttgcacatggtggctgtctcgaccgctgacgtcgctcggcaggttcttcaagtacaagacaacattttctcgaaccgaccggcgaccatcgccatcagctacctaacctacgaccgagccgacatggccttcgctcactatggacccttttggcgccagatgcgtaagctgtgcgtgatgaaactcttcagccgcaaaagagccgagtcgtgggagtccgtgagggacgaggtcgacacggccgtgaggaccgtggcggccaacaccggctcggccgtcaacatcggggagctggtgttttcgctcaccaagaatattatttacagggctgcgtttgggaccagctcgaatgaagggcaggacgagttcattggcatactgcaggaattttccaagttgtttggggcattcaatattgcagatttcattccctgtctcgggtgggtagacccgcaagggcttaacaacaggctggctaaggctcgtgggtcgctggacaagttcatcgacaccatcatagacgaccacttgcagaagaagaaaaagacggggagtttggatgaaggtgaaactgacatggtggatgacttgttagcgttttacagtgaagaggcaaaagtgaatgagtcggaggataatttacaaaacgccatcaaacttaccagagataacatcaaagccatcatcatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010224 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

310

Amino Acids

34.8

Weight (kDa)

8.43

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36220
fragaria_vesca	FvH4_1g12210
malus_domestica	MD02G1136000.v1.1 MD15G1249600.v1.1
prunus_persica	Prupe.7G164600_v2.0.a1
pyrus_communis	pycom02g10730 pycom15g22000
rosa_chinensis	RchiOBHm_Chr2g0099701 RchiOBHm_Chr2g0099981
rosa_laevigata	RLG00000016909 RLG00000016927
rosa_multiflora	Rmu_co8406061.1_g000001 Rmu_sc0006209.1_g000001 Rmu_sc0008864.1_g000016 Rmu_sc0008864.1_g000017 Rmu_sc0013563.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142680 Rroxscaffold_2G00142820
rosa_rugosa	Rorug02G0082600 Rorug02G0084600
rosa_samantha	Rh2AG133600 Rh2BG135100 Rh2BG137100 Rh2CG136100 Rh2CG138600 Rh2DG136500 Rh2DG139000
rosa_wichuraiana	Rw2G010230 Rw2G010390 Rw2G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	132
AatII	GACGTC	1 cut(s)	273
Acc36I	ACCTGC	1 cut(s)	271
AccB1I	GGYRCC	1 cut(s)	393
AccBSI	CCGCTC	1 cut(s)	38
AccI	GTMKAC	2 cut(s)	474, 687
AciI	CCGC	8 cut(s)	36, 119, 213, 229, 264, 433, 497, 692
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	4 cut(s)	189, 480, 498, 513
AcsI	RAATTY	1 cut(s)	626
AcuI	CTGAAG	1 cut(s)	412
AcyI	GRCGYC	2 cut(s)	270, 394
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	2 cut(s)	209, 294
AfiI	CCNNNNNNNGG	6 cut(s)	146, 187, 232, 450, 677, 678
AgsI	TTSAA	2 cut(s)	290, 652
AjnI	CCWGG	1 cut(s)	186
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	4 cut(s)	339, 409, 532, 585
AluI	AGCT	4 cut(s)	339, 409, 532, 585
Alw26I	GTCTC	2 cut(s)	262, 680
AlwI	GGATC	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	677
AoxI	GGCC	6 cut(s)	184, 189, 366, 480, 498, 513
ApeKI	GCWGC	1 cut(s)	569
ApoI	RAATTY	1 cut(s)	626
ArsI	GACNNNNNNTTYG	4 cut(s)	353, 385, 778, 810
Asp700I	GAANNNNTTC	1 cut(s)	425
AspLEI	GCGC	3 cut(s)	49, 108, 396
AspS9I	GGNCC	6 cut(s)	96, 125, 166, 383, 489, 579
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	2 cut(s)	538, 818
AvaI	CYCGRG	1 cut(s)	677
AvaII	GGWCC	6 cut(s)	96, 125, 166, 383, 489, 579
AxyI	CCTNAGG	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	393
BauI	CACGAG	1 cut(s)	723
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	7 cut(s)	149, 157, 335, 341, 761, 899, 929
BceAI	ACGGC	5 cut(s)	119, 226, 467, 495, 500
BciT130I	CCWGG	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	262, 680
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	620
BfoI	RGCGCY	2 cut(s)	109, 397
BfuAI	ACCTGC	1 cut(s)	271
BglI	GCCNNNNNGGC	1 cut(s)	365
BisI	GCNGC	4 cut(s)	214, 433, 498, 570
BlsI	GCNGC	4 cut(s)	215, 434, 499, 571
Bme1390I	CCNGG	2 cut(s)	123, 188
Bme18I	GGWCC	6 cut(s)	96, 125, 166, 383, 489, 579
BmeT110I	CYCGRG	1 cut(s)	677
BmgT120I	GGNCC	6 cut(s)	96, 125, 166, 383, 489, 579
BmiI	GGNNCC	5 cut(s)	98, 126, 385, 395, 580
BmrFI	CCNGG	2 cut(s)	123, 188
BmsI	GCATC	2 cut(s)	225, 390
Bpu10I	CCTNAGC	1 cut(s)	717
BpuMI	CCSGG	1 cut(s)	123
BsaHI	GRCGYC	2 cut(s)	270, 394
BsaJI	CCNNGG	3 cut(s)	79, 181, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	6 cut(s)	146, 187, 232, 450, 677, 678
Bse118I	RCCGGY	2 cut(s)	319, 506
Bse21I	CCTNAGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	3 cut(s)	79, 181, 492
BseGI	GGATG	2 cut(s)	805, 829
BseLI	CCNNNNNNNGG	6 cut(s)	146, 187, 232, 450, 677, 678
BseX3I	CGGCCG	2 cut(s)	480, 513
BseXI	GCAGC	1 cut(s)	556
Bsh1285I	CGRYCG	5 cut(s)	264, 320, 355, 483, 516
BshFI	GGCC	6 cut(s)	186, 191, 368, 482, 500, 515
BshNI	GGYRCC	1 cut(s)	393
BsiEI	CGRYCG	5 cut(s)	264, 320, 355, 483, 516
BsiHKCI	CYCGRG	1 cut(s)	677
BsiSI	CCGG	3 cut(s)	122, 320, 507
BslFI	GGGAC	4 cut(s)	82, 138, 479, 592
BslI	CCNNNNNNNGG	6 cut(s)	146, 187, 232, 450, 677, 678
BsmAI	GTCTC	2 cut(s)	262, 680
BsmFI	GGGAC	4 cut(s)	82, 138, 479, 592
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	6 cut(s)	186, 191, 368, 482, 500, 515
BsoBI	CYCGRG	1 cut(s)	677
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	8 cut(s)	36, 119, 213, 229, 264, 433, 497, 692
BspANI	GGCC	6 cut(s)	186, 191, 368, 482, 500, 515
BspLI	GGNNCC	5 cut(s)	98, 126, 385, 395, 580
BspMAI	CTGCAG	1 cut(s)	624
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	393
BsrBI	CCGCTC	1 cut(s)	38
BsrFI	RCCGGY	2 cut(s)	319, 506
BssAI	RCCGGY	2 cut(s)	319, 506
BssECI	CCNNGG	3 cut(s)	79, 181, 492
BssMI	GATC	1 cut(s)	60
BssNI	GRCGYC	2 cut(s)	270, 394
BssSI	CACGAG	1 cut(s)	723
BssT1I	CCWWGG	1 cut(s)	79
Bst2BI	CACGAG	1 cut(s)	723
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	4 cut(s)	182, 207, 493, 845
Bst6I	CTCTTC	2 cut(s)	431, 843
BstACI	GRCGYC	2 cut(s)	270, 394
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	2 cut(s)	129, 717
BstDSI	CCRYGG	2 cut(s)	181, 492
BstF5I	GGATG	2 cut(s)	805, 829
BstH2I	RGCGCY	2 cut(s)	109, 397
BstHHI	GCGC	3 cut(s)	49, 108, 396
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	2 cut(s)	262, 680
BstMBI	GATC	1 cut(s)	60
BstMCI	CGRYCG	5 cut(s)	264, 320, 355, 483, 516
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 197, 272, 329, 365, 400
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	121, 186
BstSFI	CTRYAG	1 cut(s)	620
BstV1I	GCAGC	1 cut(s)	556
BstZI	CGGCCG	2 cut(s)	480, 513
Bsu36I	CCTNAGG	1 cut(s)	129
BsuRI	GGCC	6 cut(s)	186, 191, 368, 482, 500, 515
BtgI	CCRYGG	2 cut(s)	181, 492
BtgZI	GCGATG	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	805, 829
BtsIMutI	CAGTG	1 cut(s)	850
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	714
CfoI	GCGC	3 cut(s)	49, 108, 396
Cfr10I	RCCGGY	2 cut(s)	319, 506
Cfr13I	GGNCC	6 cut(s)	96, 125, 166, 383, 489, 579
Csp6I	GTAC	2 cut(s)	208, 293
CviAII	CATG	7 cut(s)	58, 154, 232, 247, 364, 817, 928
CviQI	GTAC	2 cut(s)	208, 293
DdeI	CTNAG	2 cut(s)	129, 717
DinI	GGCGCC	1 cut(s)	395
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DraIII	CACNNNGTG	1 cut(s)	250
DrdI	GACNNNNNNGTC	1 cut(s)	132
DseDI	GACNNNNNNGTC	1 cut(s)	132
EaeI	YGGCCR	4 cut(s)	189, 480, 498, 513
EagI	CGGCCG	2 cut(s)	480, 513
Eam1104I	CTCTTC	2 cut(s)	431, 843
EarI	CTCTTC	2 cut(s)	431, 843
EciI	GGCGGA	1 cut(s)	108
EclXI	CGGCCG	2 cut(s)	480, 513
Eco130I	CCWWGG	1 cut(s)	79
Eco47I	GGWCC	6 cut(s)	96, 125, 166, 383, 489, 579
Eco52I	CGGCCG	2 cut(s)	480, 513
Eco57I	CTGAAG	1 cut(s)	412
Eco81I	CCTNAGG	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	677
EcoO109I	RGGNCCY	2 cut(s)	96, 125
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	79
EgeI	GGCGCC	1 cut(s)	395
EheI	GGCGCC	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	6 cut(s)	61, 157, 235, 250, 367, 820
FaqI	GGGAC	4 cut(s)	82, 138, 479, 592
FatI	CATG	6 cut(s)	57, 153, 231, 246, 363, 816
FauI	CCCGC	2 cut(s)	43, 699
FblI	GTMKAC	2 cut(s)	474, 687
Fnu4HI	GCNGC	4 cut(s)	214, 433, 498, 570
FokI	GGATG	2 cut(s)	812, 836
Fsp4HI	GCNGC	4 cut(s)	214, 433, 498, 570
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	3 cut(s)	48, 107, 395
GluI	GCNGC	4 cut(s)	214, 433, 498, 570
HaeII	RGCGCY	2 cut(s)	109, 397
HaeIII	GGCC	6 cut(s)	186, 191, 368, 482, 500, 515
HapII	CCGG	3 cut(s)	122, 320, 507
HhaI	GCGC	3 cut(s)	49, 108, 396
Hin1I	GRCGYC	2 cut(s)	270, 394
Hin1II	CATG	6 cut(s)	61, 157, 235, 250, 367, 820
Hin6I	GCGC	3 cut(s)	47, 106, 394
HinP1I	GCGC	3 cut(s)	47, 106, 394
HincII	GTYRAC	2 cut(s)	475, 520
HindII	GTYRAC	2 cut(s)	475, 520
HinfI	GANTC	4 cut(s)	5, 446, 455, 866
HpaII	CCGG	3 cut(s)	122, 320, 507
HphI	GGTGA	2 cut(s)	538, 818
Hpy166II	GTNNAC	3 cut(s)	475, 520, 688
Hpy188I	TCNGA	1 cut(s)	871
Hpy188III	TCNNGA	3 cut(s)	99, 259, 310
Hpy8I	GTNNAC	3 cut(s)	475, 520, 688
Hpy99I	CGWCG	2 cut(s)	105, 275
HpyAV	CCTTC	3 cut(s)	379, 587, 797
HpyCH4III	ACNGT	4 cut(s)	182, 207, 493, 845
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	4 cut(s)	244, 622, 659, 772
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 197, 272, 329, 365, 400
HpyF3I	CTNAG	2 cut(s)	129, 717
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	2 cut(s)	270, 394
Hsp92II	CATG	6 cut(s)	61, 157, 235, 250, 367, 820
HspAI	GCGC	3 cut(s)	47, 106, 394
KasI	GGCGCC	1 cut(s)	393
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	43, 529
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	2 cut(s)	225, 390
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	1 cut(s)	62
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	1 cut(s)	60
MboII	GAAGA	6 cut(s)	211, 278, 418, 787, 790, 860
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	2 cut(s)	626, 877
MluNI	TGGCCA	1 cut(s)	191
Mly113I	GGCGCC	1 cut(s)	394
MlyI	GAGTC	3 cut(s)	455, 464, 875
MmeI	TCCRAC	1 cut(s)	849
MnlI	CCTC	6 cut(s)	236, 456, 463, 480, 844, 865
Mox20I	TGGCCA	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	1 cut(s)	702
MslI	CAYNNNNRTG	3 cut(s)	158, 482, 926
Msp20I	TGGCCA	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	3 cut(s)	122, 320, 507
MspR9I	CCNGG	2 cut(s)	123, 188
Mva1269I	GAATGC	1 cut(s)	647
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	6 cut(s)	44, 197, 272, 329, 365, 400
NarI	GGCGCC	1 cut(s)	394
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	6 cut(s)	61, 157, 235, 250, 367, 820
NlaIV	GGNNCC	5 cut(s)	98, 126, 385, 395, 580
NmeAIII	GCCGAG	3 cut(s)	256, 469, 491
NspI	RCATGY	1 cut(s)	157
OliI	CACNNNNGTG	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	2 cut(s)	357, 480
PctI	GAATGC	1 cut(s)	647
PdmI	GAANNNNTTC	1 cut(s)	425
PflFI	GACNNNGTC	1 cut(s)	470
PkrI	GCNGC	4 cut(s)	215, 434, 499, 571
PleI	GAGTC	3 cut(s)	454, 463, 874
PluTI	GGCGCC	1 cut(s)	397
PpsI	GAGTC	3 cut(s)	454, 463, 874
PpuMI	RGGWCCY	2 cut(s)	96, 125
Psp5II	RGGWCCY	2 cut(s)	96, 125
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	5 cut(s)	98, 126, 385, 395, 580
PspPI	GGNCC	6 cut(s)	96, 125, 166, 383, 489, 579
PspPPI	RGGWCCY	2 cut(s)	96, 125
PstI	CTGCAG	1 cut(s)	624
PsyI	GACNNNGTC	1 cut(s)	470
RsaI	GTAC	2 cut(s)	209, 294
RsaNI	GTAC	2 cut(s)	208, 293
RseI	CAYNNNNRTG	3 cut(s)	158, 482, 926
SalI	GTCGAC	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	4 cut(s)	214, 433, 498, 570
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	6 cut(s)	96, 125, 166, 383, 489, 579
SchI	GAGTC	3 cut(s)	455, 464, 875
ScrFI	CCNGG	2 cut(s)	123, 188
SfaNI	GCATC	2 cut(s)	225, 390
SfcI	CTRYAG	1 cut(s)	620
SfoI	GGCGCC	1 cut(s)	395
SinI	GGWCC	6 cut(s)	96, 125, 166, 383, 489, 579
SmiMI	CAYNNNNRTG	3 cut(s)	158, 482, 926
Sse9I	AATT	2 cut(s)	626, 877
SsiI	CCGC	8 cut(s)	36, 119, 213, 229, 264, 433, 497, 692
SspDI	GGCGCC	1 cut(s)	393
SspI	AATATT	2 cut(s)	556, 655
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	121, 186
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	4 cut(s)	182, 207, 493, 845
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	5 cut(s)	260, 311, 474, 587, 747
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	2 cut(s)	626, 877
TatI	WGTACW	1 cut(s)	292
TauI	GCSGC	3 cut(s)	216, 435, 500
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	1 cut(s)	850
TseI	GCWGC	1 cut(s)	569
TspDTI	ATGAA	6 cut(s)	434, 598, 606, 655, 733, 816
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	1 cut(s)	850
Tth111I	GACNNNGTC	1 cut(s)	470
VpaK11BI	GGWCC	6 cut(s)	96, 125, 166, 383, 489, 579
XapI	RAATTY	1 cut(s)	626
XceI	RCATGY	1 cut(s)	157
XmiI	GTMKAC	2 cut(s)	474, 687
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	1 cut(s)	197
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.