Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008864.1

Orthogroup ID

OG0005004

Physical Location & Seq

Genomic Coordinates Forward (+)

92241 .. 92534

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008864.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgcgagaggtttccgagctgtttggagcttttaatatagccgatttctttccttggcttgggtggcttgacccacaaggtattaaacccagactcgttaagtctcgcaagtcactggacaagttcattgataagatcatagacgaccacatccaaaacagtaaaggtgaaggtgatgaaactgatattgttgatgatttactagccttcaacagagaccaagcaacagggaaggaatccgccatcttacttactagagataacatcaaagccattattctggtaatgaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010224 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

97

Amino Acids

11.03

Weight (kDa)

4.86

Isoelectric Point (pI)

24.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36220
fragaria_vesca	FvH4_1g12210
malus_domestica	MD02G1136000.v1.1 MD15G1249600.v1.1
prunus_persica	Prupe.7G164600_v2.0.a1
pyrus_communis	pycom02g10730 pycom15g22000
rosa_chinensis	RchiOBHm_Chr2g0099701 RchiOBHm_Chr2g0099981
rosa_laevigata	RLG00000016909 RLG00000016927
rosa_multiflora	Rmu_co8406061.1_g000001 Rmu_sc0006209.1_g000001 Rmu_sc0008864.1_g000016 Rmu_sc0008864.1_g000017 Rmu_sc0013563.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142680 Rroxscaffold_2G00142820
rosa_rugosa	Rorug02G0082600 Rorug02G0084600
rosa_samantha	Rh2AG133600 Rh2BG135100 Rh2BG137100 Rh2CG136100 Rh2CG138600 Rh2DG136500 Rh2DG139000
rosa_wichuraiana	Rw2G010230 Rw2G010390 Rw2G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	2 cut(s)	19, 29
AluI	AGCT	2 cut(s)	19, 29
Alw26I	GTCTC	2 cut(s)	108, 210
AsuHPI	GGTGA	2 cut(s)	179, 185
BccI	CCATC	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	108, 210
BfaI	CTAG	2 cut(s)	203, 255
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	2 cut(s)	108, 210
Bso31I	GGTCTC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	240
BspTNI	GGTCTC	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	1 cut(s)	138
BstMAI	GTCTC	2 cut(s)	108, 210
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	113
CviJI	RGCY	7 cut(s)	19, 29, 41, 58, 67, 206, 272
CviKI_1	RGCY	7 cut(s)	19, 29, 41, 58, 67, 206, 272
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaiI	YATR	2 cut(s)	38, 140
FokI	GGATG	1 cut(s)	137
FspBI	CTAG	2 cut(s)	203, 255
HinfI	GANTC	2 cut(s)	93, 236
HphI	GGTGA	2 cut(s)	179, 185
Hpy188I	TCNGA	1 cut(s)	16
HpyAV	CCTTC	3 cut(s)	164, 217, 226
HpyCH4III	ACNGT	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	4 cut(s)	101, 103, 213, 266
MaeI	CTAG	2 cut(s)	203, 255
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MluCI	AATT	1 cut(s)	289
MlyI	GAGTC	1 cut(s)	87
MseI	TTAA	4 cut(s)	33, 84, 99, 292
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	236
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
SaqAI	TTAA	4 cut(s)	33, 84, 99, 292
Sau3AI	GATC	1 cut(s)	135
SchI	GAGTC	1 cut(s)	87
SetI	ASST	6 cut(s)	12, 21, 31, 82, 169, 175
Sse9I	AATT	1 cut(s)	289
SsiI	CCGC	1 cut(s)	240
SspMI	CTAG	2 cut(s)	203, 255
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	161
TasI	AATT	1 cut(s)	289
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	4 cut(s)	33, 84, 99, 292
Tru9I	TTAA	4 cut(s)	33, 84, 99, 292
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	2 cut(s)	115, 192
TspRI	CASTG	1 cut(s)	120
XspI	CTAG	2 cut(s)	203, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.