Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005004

Physical Location & Seq

Genomic Coordinates Reverse (-)

6632620 .. 6634655

Gene Structure 2036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0082600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAGCAGCAGCTCTTCCATGGCTTCCCTTCTCACCCCAACCCCAACCATTACACTCCAACACAAGAAAGATCATTTCAGGCTCAACACAAACCCACCACCCAGAATTTCCAAGAGAAATTTTGGACGCCATGGGCTTTGTTTTGTGACAAGAGCTAAGGTTGGAGGAGATGTACTTGAGAAACAATCAGTTAGTGCTGAAGACAAGAAGGATTATGGCCTGGTTAGTCTCCACCATGTTGGAATCTTGTGTGAAAACTTGGAGAGGTCGCTCGACTTTTATCAGAACATTCTTGGTCTTGAAATTAATGAGGCTAGGCCAGATGACAAACTCCCCTATAGGGGGGCGTGGTTATGGGTGGGTTCTGAGATGATTCACCTTATGGAGCTTCCAAACCCCGACCCTCTAACTGGAAGACCGGAGCATGGAGGCCGTGATAGGCACACTTGTGTTGAGATTCGGGATGTGTCTAAGCTGAAAGCAATCCTTGATGAAGCTGGTATTCCATACACGCTTAGTAAGTCTGGGAGGCCAGCGATCTTTTTTCGAGATCCAGATGAAAATGCTCTGGAATTTGCACAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010224 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

195

Amino Acids

21.95

Weight (kDa)

6.71

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	77 - 192	5e-13	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	78 - 172	7.4e-07	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36220
fragaria_vesca	FvH4_1g12210
malus_domestica	MD02G1136000.v1.1 MD15G1249600.v1.1
prunus_persica	Prupe.7G164600_v2.0.a1
pyrus_communis	pycom02g10730 pycom15g22000
rosa_chinensis	RchiOBHm_Chr2g0099701 RchiOBHm_Chr2g0099981
rosa_laevigata	RLG00000016909 RLG00000016927
rosa_multiflora	Rmu_co8406061.1_g000001 Rmu_sc0006209.1_g000001 Rmu_sc0008864.1_g000016 Rmu_sc0008864.1_g000017 Rmu_sc0013563.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142680 Rroxscaffold_2G00142820
rosa_rugosa	Rorug02G0082600 Rorug02G0084600
rosa_samantha	Rh2AG133600 Rh2BG135100 Rh2BG137100 Rh2CG136100 Rh2CG138600 Rh2DG136500 Rh2DG139000
rosa_wichuraiana	Rw2G010230 Rw2G010390 Rw2G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	545
AcsI	RAATTY	3 cut(s)	105, 118, 572
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	127
AfaI	GTAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	5 cut(s)	340, 341, 342, 410, 425
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	219
AleI	CACNNNNGTG	1 cut(s)	447
AluBI	AGCT	5 cut(s)	12, 155, 388, 475, 497
AluI	AGCT	5 cut(s)	12, 155, 388, 475, 497
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	4 cut(s)	217, 317, 430, 530
ApeKI	GCWGC	2 cut(s)	6, 9
ApoI	RAATTY	3 cut(s)	105, 118, 572
AseI	ATTAAT	1 cut(s)	306
AsuHPI	GGTGA	2 cut(s)	25, 368
BbsI	GAAGAC	2 cut(s)	207, 421
BbvI	GCAGC	2 cut(s)	18, 21
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	337
BisI	GCNGC	2 cut(s)	7, 10
BlsI	GCNGC	2 cut(s)	8, 11
Bme1390I	CCNGG	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	221
BpiI	GAAGAC	2 cut(s)	207, 421
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	18, 130
BsaWI	WCCGGW	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	5 cut(s)	340, 341, 342, 410, 425
Bse1I	ACTGG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	18, 130
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	5 cut(s)	340, 341, 342, 410, 425
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	18, 21
BshFI	GGCC	4 cut(s)	219, 319, 432, 532
BsiSI	CCGG	1 cut(s)	419
BslI	CCNNNNNNNGG	5 cut(s)	340, 341, 342, 410, 425
BsmAI	GTCTC	1 cut(s)	233
BsnI	GGCC	4 cut(s)	219, 319, 432, 532
Bsp143I	GATC	3 cut(s)	70, 537, 550
Bsp19I	CCATGG	2 cut(s)	18, 130
BspANI	GGCC	4 cut(s)	219, 319, 432, 532
BspCNI	CTCAG	1 cut(s)	358
BspPI	GGATC	1 cut(s)	545
BspQI	GCTCTTC	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	2 cut(s)	18, 130
BssMI	GATC	3 cut(s)	70, 537, 550
BssNI	GRCGYC	1 cut(s)	127
BssT1I	CCWWGG	2 cut(s)	18, 130
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	582
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	4 cut(s)	156, 366, 471, 515
BstDSI	CCRYGG	2 cut(s)	18, 130
BstF5I	GGATG	1 cut(s)	469
BstKTI	GATC	3 cut(s)	73, 540, 553
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	70, 537, 550
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	337
BstV1I	GCAGC	2 cut(s)	18, 21
BstV2I	GAAGAC	2 cut(s)	207, 421
BstX2I	RGATCY	1 cut(s)	550
BstXI	CCANNNNNNTGG	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	550
BsuRI	GGCC	4 cut(s)	219, 319, 432, 532
BtgI	CCRYGG	2 cut(s)	18, 130
BtsCI	GGATG	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	534
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	4 cut(s)	19, 131, 236, 425
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	4 cut(s)	156, 366, 471, 515
DpnI	GATC	3 cut(s)	72, 539, 552
DpnII	GATC	3 cut(s)	70, 537, 550
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	18, 130
Eco57I	CTGAAG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	2 cut(s)	18, 130
ErhI	CCWWGG	2 cut(s)	18, 130
FaeI	CATG	4 cut(s)	22, 134, 239, 428
FaiI	YATR	9 cut(s)	20, 132, 216, 237, 339, 355, 383, 426, 508
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FatI	CATG	4 cut(s)	18, 130, 235, 424
Fnu4HI	GCNGC	2 cut(s)	7, 10
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	2 cut(s)	7, 10
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	2 cut(s)	7, 10
HaeIII	GGCC	4 cut(s)	219, 319, 432, 532
HapII	CCGG	1 cut(s)	419
HgaI	GACGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	127
Hin1II	CATG	4 cut(s)	22, 134, 239, 428
HinfI	GANTC	3 cut(s)	243, 373, 457
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	2 cut(s)	25, 368
Hpy188I	TCNGA	3 cut(s)	285, 367, 587
Hpy188III	TCNNGA	5 cut(s)	299, 461, 548, 554, 569
HpyAV	CCTTC	2 cut(s)	38, 202
HpyCH4III	ACNGT	1 cut(s)	582
HpyCH4V	TGCA	1 cut(s)	578
HpyF3I	CTNAG	4 cut(s)	156, 366, 471, 515
Hsp92I	GRCGYC	1 cut(s)	127
Hsp92II	CATG	4 cut(s)	22, 134, 239, 428
Kzo9I	GATC	3 cut(s)	70, 537, 550
LguI	GCTCTTC	1 cut(s)	19
LmnI	GCTCC	2 cut(s)	385, 421
Lsp1109I	GCAGC	2 cut(s)	18, 21
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	3 cut(s)	72, 539, 552
MboI	GATC	3 cut(s)	70, 537, 550
MboII	GAAGA	3 cut(s)	6, 212, 426
MflI	RGATCY	1 cut(s)	550
MluCI	AATT	4 cut(s)	105, 118, 303, 572
MmeI	TCCRAC	3 cut(s)	82, 142, 220
MnlI	CCTC	6 cut(s)	158, 258, 304, 414, 422, 522
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	447
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
NcoI	CCATGG	2 cut(s)	18, 130
NdeII	GATC	3 cut(s)	70, 537, 550
NlaIII	CATG	4 cut(s)	22, 134, 239, 428
NmuCI	GTSAC	1 cut(s)	145
OliI	CACNNNNGTG	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	19
PfeI	GAWTC	3 cut(s)	243, 373, 457
PkrI	GCNGC	2 cut(s)	8, 11
PshBI	ATTAAT	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	447
SapI	GCTCTTC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	2 cut(s)	7, 10
Sau3AI	GATC	3 cut(s)	70, 537, 550
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	8 cut(s)	14, 157, 162, 269, 381, 390, 477, 499
SfcI	CTRYAG	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	4 cut(s)	105, 118, 303, 572
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	2 cut(s)	18, 130
TaaI	ACNGT	1 cut(s)	582
TaqI	TCGA	2 cut(s)	273, 547
TasI	AATT	4 cut(s)	105, 118, 303, 572
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	3 cut(s)	243, 373, 457
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	6, 9
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	507, 573
VspI	ATTAAT	1 cut(s)	306
XapI	RAATTY	3 cut(s)	105, 118, 572
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.