Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005004

Physical Location & Seq

Genomic Coordinates Reverse (-)

12079509 .. 12080414

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG136100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGATTCTCTTATGCAAGCCCCCTTCATCCTATTCCTCATCATTATCCCTCTGACAATTTTACTGGGTTTAGTACTCTCCGCGTTATTGCCTCAGCAAAAGTTATCATACCCACCGGGGCCTAAAGGCTTGCCCATAATCGGCAATATGCGAATCATGGACCAGCTAACCCACAGAGGCCTCGCCAAACTCGCCAACCTATACAGCGGCATCCTCCATCTCCGCATGGGTTTCTTACACATGGTAGTCGTCTCGAGCGCTGACGTGGCCCGCCAAGTCCTCCAAGTCCAAGACATCACTTTCTCCAACCGCCCAGCCACAGTAGCCATTCGCTACCTCACCTACGACCGAGCGGACTTGGCCTTCGCTCATTACGGGCCGTTTTGGCGCCAGATGAGAAAGCTGTCTATCGTGAAGCTCTTCAGCCGGAAACGTGCCGAGTCGTGGGAGTCCGTCAGGGACGAAGTTGACTCGGCTGTGCGAGTCGTGTCTGCAAGAGCCGGCACCGCTGTGAACATCGGAGAGGTGGTGTTTTCGATGACCAAAAGTATAATATACAGGGCCGCGTTTGGGTCGAGCTCGAAGGAAGGGCAGGATGAGTTCATTGCAATAATGCGAGAGGTTTCAGAGCTGTTTGGAGCTTTTAATATAGCCGATTTCTTTCCTTGGCTTGGGTGGCTTGACCCACAAGGTATTAAACCCAGACTCGTTAAGTCTCGCAAGTCACTGGACAAGTTCATTGATAACATCATAGACGACCACATCCAAAATAGTAAAGGTGAAGGTGATGAAACTGATATTGTTGATGATTTACTAGCCTTCAACAGAGACCAAGCAACAGGGAAGGAATCCGCCATCTTACTTACTAGAGATAACATCAAAGCCATTATTCTGGTATTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010224 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

301

Amino Acids

33.69

Weight (kDa)

9.02

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	38 - 299	1.7e-30	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36220
fragaria_vesca	FvH4_1g12210
malus_domestica	MD02G1136000.v1.1 MD15G1249600.v1.1
prunus_persica	Prupe.7G164600_v2.0.a1
pyrus_communis	pycom02g10730 pycom15g22000
rosa_chinensis	RchiOBHm_Chr2g0099701 RchiOBHm_Chr2g0099981
rosa_laevigata	RLG00000016909 RLG00000016927
rosa_multiflora	Rmu_co8406061.1_g000001 Rmu_sc0006209.1_g000001 Rmu_sc0008864.1_g000016 Rmu_sc0008864.1_g000017 Rmu_sc0013563.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142680 Rroxscaffold_2G00142820
rosa_rugosa	Rorug02G0082600 Rorug02G0084600
rosa_samantha	Rh2AG133600 Rh2BG135100 Rh2BG137100 Rh2CG136100 Rh2CG138600 Rh2DG136500 Rh2DG139000
rosa_wichuraiana	Rw2G010230 Rw2G010390 Rw2G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	387, 503
AccBSI	CCGCTC	1 cut(s)	353
AccII	CGCG	2 cut(s)	83, 566
AciI	CCGC	9 cut(s)	81, 207, 223, 271, 310, 353, 507, 564, 852
AcuI	CTGAAG	1 cut(s)	406
AcyI	GRCGYC	1 cut(s)	388
AfaI	GTAC	1 cut(s)	75
AfeI	AGCGCT	1 cut(s)	259
AfiI	CCNNNNNNNGG	4 cut(s)	140, 444, 570, 671
AgsI	TTSAA	1 cut(s)	823
AjiI	CACGTC	1 cut(s)	265
AleI	CACNNNNGTG	1 cut(s)	509
AluBI	AGCT	6 cut(s)	166, 403, 418, 579, 631, 641
AluI	AGCT	6 cut(s)	166, 403, 418, 579, 631, 641
Alw21I	GWGCWC	1 cut(s)	581
Alw26I	GTCTC	3 cut(s)	256, 720, 822
Ama87I	CYCGRG	1 cut(s)	253
Aor51HI	AGCGCT	1 cut(s)	259
AoxI	GGCC	6 cut(s)	119, 178, 267, 360, 377, 561
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
Asp700I	GAANNNNTTC	1 cut(s)	419
AspLEI	GCGC	2 cut(s)	260, 390
AspS9I	GGNCC	5 cut(s)	119, 160, 268, 377, 561
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	3 cut(s)	331, 791, 797
AvaI	CYCGRG	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	160
BanI	GGYRCC	2 cut(s)	387, 503
BanII	GRGCYC	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	581
BbvCI	CCTCAGC	1 cut(s)	93
BccI	CCATC	2 cut(s)	225, 863
BceAI	ACGGC	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	3 cut(s)	256, 720, 822
BfaI	CTAG	2 cut(s)	815, 867
BfoI	RGCGCY	2 cut(s)	261, 391
BglI	GCCNNNNNGGC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	208, 564
BlsI	GCNGC	2 cut(s)	209, 565
BmcAI	AGTACT	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	253
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	5 cut(s)	119, 160, 268, 377, 561
BmiI	GGNNCC	3 cut(s)	120, 389, 505
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	219
BmuI	ACTGGG	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	388
BsaI	GGTCTC	1 cut(s)	822
BsaJI	CCNNGG	2 cut(s)	116, 665
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bsc4I	CCNNNNNNNGG	4 cut(s)	140, 444, 570, 671
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	2 cut(s)	69, 732
Bse3DI	GCAATG	1 cut(s)	603
BseDI	CCNNGG	2 cut(s)	116, 665
BseGI	GGATG	4 cut(s)	27, 210, 601, 762
BseLI	CCNNNNNNNGG	4 cut(s)	140, 444, 570, 671
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	69, 732
BseYI	CCCAGC	1 cut(s)	313
Bsh1236I	CGCG	2 cut(s)	83, 566
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	6 cut(s)	121, 180, 269, 362, 379, 563
BshNI	GGYRCC	2 cut(s)	387, 503
BsiEI	CGRYCG	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	581
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	3 cut(s)	116, 427, 501
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	4 cut(s)	140, 444, 570, 671
BsmAI	GTCTC	3 cut(s)	256, 720, 822
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	6 cut(s)	121, 180, 269, 362, 379, 563
Bso31I	GGTCTC	1 cut(s)	822
BsoBI	CYCGRG	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	581
BspACI	CCGC	9 cut(s)	81, 207, 223, 271, 310, 353, 507, 564, 852
BspANI	GGCC	6 cut(s)	121, 180, 269, 362, 379, 563
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	2 cut(s)	83, 566
BspLI	GGNNCC	3 cut(s)	120, 389, 505
BspQI	GCTCTTC	1 cut(s)	425
BspT107I	GGYRCC	2 cut(s)	387, 503
BspTNI	GGTCTC	1 cut(s)	822
BsrBI	CCGCTC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	603
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	69, 732
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	2 cut(s)	116, 665
BssNI	GRCGYC	1 cut(s)	388
BssT1I	CCWWGG	1 cut(s)	665
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	425
BstACI	GRCGYC	1 cut(s)	388
BstC8I	GCNNGC	4 cut(s)	18, 131, 271, 502
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	4 cut(s)	27, 210, 601, 762
BstFNI	CGCG	2 cut(s)	83, 566
BstH2I	RGCGCY	2 cut(s)	261, 391
BstHHI	GCGC	2 cut(s)	260, 390
BstMAI	GTCTC	3 cut(s)	256, 720, 822
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	7 cut(s)	191, 266, 323, 359, 385, 506, 676
BstSCI	CCNGG	1 cut(s)	115
BstUI	CGCG	2 cut(s)	83, 566
BstXI	CCANNNNNNTGG	1 cut(s)	892
BsuRI	GGCC	6 cut(s)	121, 180, 269, 362, 379, 563
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	4 cut(s)	27, 210, 601, 762
BtsIMutI	CAGTG	1 cut(s)	725
Cac8I	GCNNGC	4 cut(s)	18, 131, 271, 502
CfoI	GCGC	2 cut(s)	260, 390
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	5 cut(s)	119, 160, 268, 377, 561
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	3 cut(s)	157, 226, 241
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	1 cut(s)	93
DinI	GGCGCC	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
EciI	GGCGGA	1 cut(s)	841
Ecl136II	GAGCTC	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	665
Eco147I	AGGCCT	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	581
Eco31I	GGTCTC	1 cut(s)	822
Eco47I	GGWCC	1 cut(s)	160
Eco47III	AGCGCT	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	579
Eco57I	CTGAAG	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	665
EcoT38I	GRGCYC	1 cut(s)	581
EgeI	GGCGCC	1 cut(s)	389
EheI	GGCGCC	1 cut(s)	389
ErhI	CCWWGG	1 cut(s)	665
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	3 cut(s)	160, 229, 244
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	3 cut(s)	156, 225, 240
FauI	CCCGC	1 cut(s)	278
Fnu4HI	GCNGC	2 cut(s)	208, 564
FokI	GGATG	4 cut(s)	14, 197, 608, 749
FriOI	GRGCYC	1 cut(s)	581
Fsp4HI	GCNGC	2 cut(s)	208, 564
FspBI	CTAG	2 cut(s)	815, 867
GlaI	GCGC	2 cut(s)	259, 389
GluI	GCNGC	2 cut(s)	208, 564
GsaI	CCCAGC	1 cut(s)	317
HaeII	RGCGCY	2 cut(s)	261, 391
HaeIII	GGCC	6 cut(s)	121, 180, 269, 362, 379, 563
HapII	CCGG	3 cut(s)	116, 427, 501
HhaI	GCGC	2 cut(s)	260, 390
Hin1I	GRCGYC	1 cut(s)	388
Hin1II	CATG	3 cut(s)	160, 229, 244
Hin6I	GCGC	2 cut(s)	258, 388
HinP1I	GCGC	2 cut(s)	258, 388
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	8 cut(s)	5, 153, 440, 449, 470, 483, 705, 848
HpaII	CCGG	3 cut(s)	116, 427, 501
HphI	GGTGA	3 cut(s)	331, 791, 797
Hpy166II	GTNNAC	2 cut(s)	469, 514
Hpy188I	TCNGA	3 cut(s)	54, 521, 628
Hpy188III	TCNNGA	2 cut(s)	253, 412
Hpy8I	GTNNAC	2 cut(s)	469, 514
HpyAV	CCTTC	7 cut(s)	34, 373, 577, 581, 776, 829, 838
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	2 cut(s)	264, 433
HpyCH4V	TGCA	3 cut(s)	16, 494, 608
HpyF10VI	GCNNNNNNNGC	7 cut(s)	191, 266, 323, 359, 385, 506, 676
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	2 cut(s)	264, 433
Hsp92I	GRCGYC	1 cut(s)	388
Hsp92II	CATG	3 cut(s)	160, 229, 244
HspAI	GCGC	2 cut(s)	258, 388
KasI	GGCGCC	1 cut(s)	387
KroI	GCCGGC	1 cut(s)	500
KroNI	GCCGGC	1 cut(s)	502
LguI	GCTCTTC	1 cut(s)	425
LmnI	GCTCC	1 cut(s)	638
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	2 cut(s)	815, 867
MaeII	ACGT	2 cut(s)	264, 433
MaeIII	GTNAC	1 cut(s)	723
MbiI	CCGCTC	1 cut(s)	353
MboII	GAAGA	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	581
MluCI	AATT	1 cut(s)	57
Mly113I	GGCGCC	1 cut(s)	388
MlyI	GAGTC	5 cut(s)	449, 458, 464, 492, 699
MmeI	TCCRAC	1 cut(s)	330
MroNI	GCCGGC	1 cut(s)	500
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	4 cut(s)	645, 696, 711, 904
MslI	CAYNNNNRTG	1 cut(s)	509
MspA1I	CMGCKG	2 cut(s)	207, 509
MspI	CCGG	3 cut(s)	116, 427, 501
MspR9I	CCNGG	1 cut(s)	117
MvnI	CGCG	2 cut(s)	83, 566
MwoI	GCNNNNNNNGC	7 cut(s)	191, 266, 323, 359, 385, 506, 676
NaeI	GCCGGC	1 cut(s)	502
NarI	GGCGCC	1 cut(s)	388
NciI	CCSGG	1 cut(s)	117
NgoMIV	GCCGGC	1 cut(s)	500
NlaIII	CATG	3 cut(s)	160, 229, 244
NlaIV	GGNNCC	3 cut(s)	120, 389, 505
NmeAIII	GCCGAG	2 cut(s)	452, 463
NmuCI	GTSAC	1 cut(s)	723
OliI	CACNNNNGTG	1 cut(s)	509
PaeR7I	CTCGAG	1 cut(s)	253
PceI	AGGCCT	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	425
PdiI	GCCGGC	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	3 cut(s)	5, 153, 848
PkrI	GCNGC	2 cut(s)	209, 565
PleI	GAGTC	5 cut(s)	448, 457, 464, 491, 699
PluTI	GGCGCC	1 cut(s)	391
PpsI	GAGTC	5 cut(s)	448, 457, 464, 491, 699
Psp124BI	GAGCTC	1 cut(s)	581
PspFI	CCCAGC	1 cut(s)	313
PspN4I	GGNNCC	3 cut(s)	120, 389, 505
PspPI	GGNCC	5 cut(s)	119, 160, 268, 377, 561
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	509
SacI	GAGCTC	1 cut(s)	581
SapI	GCTCTTC	1 cut(s)	425
SaqAI	TTAA	4 cut(s)	645, 696, 711, 904
SatI	GCNGC	2 cut(s)	208, 564
Sau96I	GGNCC	5 cut(s)	119, 160, 268, 377, 561
ScaI	AGTACT	1 cut(s)	75
SchI	GAGTC	5 cut(s)	449, 458, 464, 492, 699
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	581
SfaNI	GCATC	1 cut(s)	219
SfoI	GGCGCC	1 cut(s)	389
Sfr274I	CTCGAG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	160
SlaI	CTCGAG	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	1 cut(s)	57
SseBI	AGGCCT	1 cut(s)	180
SsiI	CCGC	9 cut(s)	81, 207, 223, 271, 310, 353, 507, 564, 852
SspDI	GGCGCC	1 cut(s)	387
SspMI	CTAG	2 cut(s)	815, 867
SstI	GAGCTC	1 cut(s)	581
StuI	AGGCCT	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	665
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	2 cut(s)	267, 436
TaqI	TCGA	4 cut(s)	254, 536, 575, 581
TaqII	GACCGA	1 cut(s)	363
TasI	AATT	1 cut(s)	57
TatI	WGTACW	1 cut(s)	73
TauI	GCSGC	2 cut(s)	210, 566
TfiI	GAWTC	3 cut(s)	5, 153, 848
Tru1I	TTAA	4 cut(s)	645, 696, 711, 904
Tru9I	TTAA	4 cut(s)	645, 696, 711, 904
TscAI	CASTG	1 cut(s)	732
TseFI	GTSAC	1 cut(s)	723
Tsp45I	GTSAC	1 cut(s)	723
TspDTI	ATGAA	4 cut(s)	16, 592, 727, 804
TspGWI	ACGGA	1 cut(s)	442
TspRI	CASTG	1 cut(s)	732
VpaK11BI	GGWCC	1 cut(s)	160
XhoI	CTCGAG	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	2 cut(s)	815, 867
ZrmI	AGTACT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.