Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008864.1

Orthogroup ID

OG0005004

Physical Location & Seq

Genomic Coordinates Forward (+)

91636 .. 92193

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008864.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggattctctcatgcaagcccccttcatcctattcctcatcattatccctctgacaattttactgggtttagtactctccgcgttattgcctccgcaaaagttatcatacccaccggggcctaaaggcttgcccataatcggcaatatgcgaatcatggaccagctaacccacagaggcctcgccaaactcgccaacctattcggcggcatcctccatctccgcatgggtttcttacacatggtagtcgtctcgagcgctgacgtggcccgccaagtcctccaagtccaagacatcactttctccaaccgcccagccacagtagccattcgctacctcacctacgaccgagcggacttggccttcgctcattacgggccgttttggcgccagatgagaaagctgtctatcgtgaagctcttcagccggaaacgtgccgagtcgtgggagtccgtcagggacgaagttgactcggctgtgcgagtcgtgtctgcaagagccggcaccgctgtgaacatcggggaggtggtgttttcgatgaccaaaagtataatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010224 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

185

Amino Acids

20.6

Weight (kDa)

10.36

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36220
fragaria_vesca	FvH4_1g12210
malus_domestica	MD02G1136000.v1.1 MD15G1249600.v1.1
prunus_persica	Prupe.7G164600_v2.0.a1
pyrus_communis	pycom02g10730 pycom15g22000
rosa_chinensis	RchiOBHm_Chr2g0099701 RchiOBHm_Chr2g0099981
rosa_laevigata	RLG00000016909 RLG00000016927
rosa_multiflora	Rmu_co8406061.1_g000001 Rmu_sc0006209.1_g000001 Rmu_sc0008864.1_g000016 Rmu_sc0008864.1_g000017 Rmu_sc0013563.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142680 Rroxscaffold_2G00142820
rosa_rugosa	Rorug02G0082600 Rorug02G0084600
rosa_samantha	Rh2AG133600 Rh2BG135100 Rh2BG137100 Rh2CG136100 Rh2CG138600 Rh2DG136500 Rh2DG139000
rosa_wichuraiana	Rw2G010230 Rw2G010390 Rw2G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	387, 503
AccBSI	CCGCTC	1 cut(s)	353
AccII	CGCG	1 cut(s)	83
AciI	CCGC	8 cut(s)	81, 95, 207, 223, 271, 310, 353, 507
AcuI	CTGAAG	1 cut(s)	406
AcyI	GRCGYC	1 cut(s)	388
AfaI	GTAC	1 cut(s)	75
AfeI	AGCGCT	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	140, 444
AjiI	CACGTC	1 cut(s)	265
AleI	CACNNNNGTG	1 cut(s)	509
AluBI	AGCT	3 cut(s)	166, 403, 418
AluI	AGCT	3 cut(s)	166, 403, 418
Alw26I	GTCTC	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	253
Aor51HI	AGCGCT	1 cut(s)	259
AoxI	GGCC	5 cut(s)	119, 178, 267, 360, 377
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
Asp700I	GAANNNNTTC	1 cut(s)	419
AspLEI	GCGC	2 cut(s)	260, 390
AspS9I	GGNCC	4 cut(s)	119, 160, 268, 377
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	160
BanI	GGYRCC	2 cut(s)	387, 503
BccI	CCATC	1 cut(s)	225
BceAI	ACGGC	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	256
BfoI	RGCGCY	2 cut(s)	261, 391
BglI	GCCNNNNNGGC	1 cut(s)	385
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
BmcAI	AGTACT	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	253
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	4 cut(s)	119, 160, 268, 377
BmiI	GGNNCC	3 cut(s)	120, 389, 505
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	219
BmuI	ACTGGG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 444
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	27, 210
BseLI	CCNNNNNNNGG	2 cut(s)	140, 444
BseNI	ACTGG	1 cut(s)	69
BseYI	CCCAGC	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	83
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	5 cut(s)	121, 180, 269, 362, 379
BshNI	GGYRCC	2 cut(s)	387, 503
BsiEI	CGRYCG	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	3 cut(s)	116, 427, 501
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	2 cut(s)	140, 444
BsmAI	GTCTC	1 cut(s)	256
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	5 cut(s)	121, 180, 269, 362, 379
BsoBI	CYCGRG	1 cut(s)	253
BspACI	CCGC	8 cut(s)	81, 95, 207, 223, 271, 310, 353, 507
BspANI	GGCC	5 cut(s)	121, 180, 269, 362, 379
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	3 cut(s)	120, 389, 505
BspQI	GCTCTTC	1 cut(s)	425
BspT107I	GGYRCC	2 cut(s)	387, 503
BsrBI	CCGCTC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	1 cut(s)	116
BssNI	GRCGYC	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	425
BstACI	GRCGYC	1 cut(s)	388
BstC8I	GCNNGC	4 cut(s)	18, 131, 271, 502
BstF5I	GGATG	2 cut(s)	27, 210
BstFNI	CGCG	1 cut(s)	83
BstH2I	RGCGCY	2 cut(s)	261, 391
BstHHI	GCGC	2 cut(s)	260, 390
BstMAI	GTCTC	1 cut(s)	256
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	6 cut(s)	191, 266, 323, 359, 385, 506
BstSCI	CCNGG	1 cut(s)	115
BstUI	CGCG	1 cut(s)	83
BsuRI	GGCC	5 cut(s)	121, 180, 269, 362, 379
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	27, 210
Cac8I	GCNNGC	4 cut(s)	18, 131, 271, 502
CfoI	GCGC	2 cut(s)	260, 390
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	4 cut(s)	119, 160, 268, 377
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	4 cut(s)	13, 157, 226, 241
CviQI	GTAC	1 cut(s)	74
DinI	GGCGCC	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco147I	AGGCCT	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	160
Eco47III	AGCGCT	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	253
EcoO109I	RGGNCCY	1 cut(s)	119
EgeI	GGCGCC	1 cut(s)	389
EheI	GGCGCC	1 cut(s)	389
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	4 cut(s)	16, 160, 229, 244
FaiI	YATR	9 cut(s)	14, 109, 137, 149, 158, 227, 242, 551, 556
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	4 cut(s)	12, 156, 225, 240
FauI	CCCGC	1 cut(s)	278
Fnu4HI	GCNGC	1 cut(s)	208
FokI	GGATG	2 cut(s)	14, 197
Fsp4HI	GCNGC	1 cut(s)	208
GlaI	GCGC	2 cut(s)	259, 389
GluI	GCNGC	1 cut(s)	208
GsaI	CCCAGC	1 cut(s)	317
HaeII	RGCGCY	2 cut(s)	261, 391
HaeIII	GGCC	5 cut(s)	121, 180, 269, 362, 379
HapII	CCGG	3 cut(s)	116, 427, 501
HhaI	GCGC	2 cut(s)	260, 390
Hin1I	GRCGYC	1 cut(s)	388
Hin1II	CATG	4 cut(s)	16, 160, 229, 244
Hin6I	GCGC	2 cut(s)	258, 388
HinP1I	GCGC	2 cut(s)	258, 388
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	6 cut(s)	5, 153, 440, 449, 470, 483
HpaII	CCGG	3 cut(s)	116, 427, 501
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	2 cut(s)	469, 514
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	2 cut(s)	253, 412
Hpy8I	GTNNAC	2 cut(s)	469, 514
HpyAV	CCTTC	2 cut(s)	34, 373
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	2 cut(s)	264, 433
HpyCH4V	TGCA	2 cut(s)	16, 494
HpyF10VI	GCNNNNNNNGC	6 cut(s)	191, 266, 323, 359, 385, 506
HpySE526I	ACGT	2 cut(s)	264, 433
Hsp92I	GRCGYC	1 cut(s)	388
Hsp92II	CATG	4 cut(s)	16, 160, 229, 244
HspAI	GCGC	2 cut(s)	258, 388
KasI	GGCGCC	1 cut(s)	387
KroI	GCCGGC	1 cut(s)	500
KroNI	GCCGGC	1 cut(s)	502
LguI	GCTCTTC	1 cut(s)	425
LpnPI	CCDG	8 cut(s)	50, 129, 176, 327, 404, 440, 442, 514
LweI	GCATC	1 cut(s)	219
MaeII	ACGT	2 cut(s)	264, 433
MbiI	CCGCTC	1 cut(s)	353
MboII	GAAGA	1 cut(s)	412
MluCI	AATT	1 cut(s)	57
Mly113I	GGCGCC	1 cut(s)	388
MlyI	GAGTC	4 cut(s)	449, 458, 464, 492
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	9 cut(s)	47, 60, 102, 170, 191, 224, 290, 347, 517
MroNI	GCCGGC	1 cut(s)	500
MroXI	GAANNNNTTC	1 cut(s)	419
MslI	CAYNNNNRTG	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	3 cut(s)	116, 427, 501
MspR9I	CCNGG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	6 cut(s)	191, 266, 323, 359, 385, 506
NaeI	GCCGGC	1 cut(s)	502
NarI	GGCGCC	1 cut(s)	388
NciI	CCSGG	1 cut(s)	117
NgoMIV	GCCGGC	1 cut(s)	500
NlaIII	CATG	4 cut(s)	16, 160, 229, 244
NlaIV	GGNNCC	3 cut(s)	120, 389, 505
NmeAIII	GCCGAG	2 cut(s)	452, 463
OliI	CACNNNNGTG	1 cut(s)	509
PaeR7I	CTCGAG	1 cut(s)	253
PceI	AGGCCT	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	425
PdiI	GCCGGC	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	5, 153
PkrI	GCNGC	1 cut(s)	209
PleI	GAGTC	4 cut(s)	448, 457, 464, 491
PluTI	GGCGCC	1 cut(s)	391
PpsI	GAGTC	4 cut(s)	448, 457, 464, 491
PspFI	CCCAGC	1 cut(s)	313
PspN4I	GGNNCC	3 cut(s)	120, 389, 505
PspPI	GGNCC	4 cut(s)	119, 160, 268, 377
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	509
SapI	GCTCTTC	1 cut(s)	425
SatI	GCNGC	1 cut(s)	208
Sau96I	GGNCC	4 cut(s)	119, 160, 268, 377
ScaI	AGTACT	1 cut(s)	75
SchI	GAGTC	4 cut(s)	449, 458, 464, 492
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	9 cut(s)	168, 201, 267, 339, 344, 405, 420, 436, 528
SfaNI	GCATC	1 cut(s)	219
SfoI	GGCGCC	1 cut(s)	389
Sfr274I	CTCGAG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	160
SlaI	CTCGAG	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	1 cut(s)	57
SseBI	AGGCCT	1 cut(s)	180
SsiI	CCGC	8 cut(s)	81, 95, 207, 223, 271, 310, 353, 507
SspDI	GGCGCC	1 cut(s)	387
StuI	AGGCCT	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	2 cut(s)	267, 436
TaqI	TCGA	2 cut(s)	254, 536
TaqII	GACCGA	1 cut(s)	363
TasI	AATT	1 cut(s)	57
TatI	WGTACW	1 cut(s)	73
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	2 cut(s)	5, 153
TspDTI	ATGAA	1 cut(s)	16
TspGWI	ACGGA	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	160
XhoI	CTCGAG	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	419
ZrmI	AGTACT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.