Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005298

Physical Location & Seq

Genomic Coordinates Reverse (-)

16426407 .. 16427889

Gene Structure 1483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGATCCCGATTCAGTGAAGTCCACTCTCCAAAATCTAGCATTCGGAAATGTAATGGCCGCCGCAGCCCGTAATTACCAAAAGGAACTGCTTTCCAACGAGAAGGCGGCCGCCACGAGCTCCTCCAACCAGGAAGTCGACCTCGACGAGTTGATGGATGTAAGTTCTGGGTTCGATTCCATTCGATTTGATTCAATTCTGCATCTTTCATGTGCATTTCAAATTCCCAATTCGCAAAGCGATGAAGCTGAGAAGCGAGAAGCTTTGAAGAGGAAGGGGCATGGAGAGTACAGGGATATAACTGAGGGGGATTTTTTGGGTGAAGTTACTGGAACTGAAAAGGTTATCTGCCATTTTTATCACCGGGAGTTCTATAGATGCAAGATAATGGATAAGCATTTGAAGACGCTTGCCTCGAAGCATGTTGATTCTAAGTTCATCAAGCTGGATGCCGAGAATGCGCCCTTCTTTGTTACCAAGCTCGGAATCAAAACTTTGCCTTGTGTCATACTCTTCAGAAAAGGAGTTGCCGTGGATAGGTTGGTTGGATTTCAAGAAGTGGGAGCAAAAGATGATTTCAGCACAAGGGCGCTTGAAGTTGCACTAATCAAGAAAGGTATAATTAGTGAGAAGAAAGAAGACGATGATGAAGATGATGGATATCTTGAAGGCGGTCGCAGGACAGTGAGATCATCTGTGAATCTTGATTCGGATTCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007010 GO:0007017 GO:0007049 GO:0008092 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0015631 GO:0016043 GO:0016049 GO:0018130 GO:0019438 GO:0022402 GO:0030865 GO:0031122 GO:0032506 GO:0034404 GO:0034641 GO:0034654 GO:0040007 GO:0042455 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0048285 GO:0048487 GO:0051211 GO:0051301 GO:0055086 GO:0061640 GO:0071704 GO:0071840 GO:0097435 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

241

Amino Acids

26.81

Weight (kDa)

5.27

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	101 - 186	1e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50960 AT3G50960 AT5G66410
fragaria_vesca	FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_5g33310
malus_domestica	MD02G1141000.v1.1 MD15G1253500.v1.1
prunus_persica	Prupe.5G010500_v2.0.a1 Prupe.5G010500_v2.0.a1 Prupe.6G150600_v2.0.a1 Prupe.6G150600_v2.0.a1
pyrus_communis	pycom02g11100 pycom15g22330
rosa_chinensis	RchiOBHm_Chr2g0100611
rosa_laevigata	RLG00000016988
rosa_multiflora	Rmu_sc0000528.1_g000004 Rmu_sc0001497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142090
rosa_rugosa	Rorug02G0090200 Rorug02G0090300 Rorug02G0090400
rosa_samantha	Rh2AG139100 Rh2BG142400 Rh2CG144700 Rh2DG144100
rosa_wichuraiana	Rw2G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	5 cut(s)	60, 63, 107, 111, 672
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	57, 108
AcsI	RAATTY	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	499
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	537
AgsI	TTSAA	7 cut(s)	195, 221, 268, 403, 554, 596, 668
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	5 cut(s)	120, 248, 263, 445, 481
AluI	AGCT	5 cut(s)	120, 248, 263, 445, 481
Alw21I	GWGCWC	1 cut(s)	122
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	57, 108
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	222
AspLEI	GCGC	2 cut(s)	463, 592
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	332, 353
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	122
BauI	CACGAG	1 cut(s)	115
BbsI	GAAGAC	2 cut(s)	410, 645
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	2 cut(s)	148, 650
BceAI	ACGGC	1 cut(s)	515
BciT130I	CCWGG	1 cut(s)	131
BcnI	CCSGG	1 cut(s)	365
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	373
BfoI	RGCGCY	1 cut(s)	593
BisI	GCNGC	5 cut(s)	60, 63, 66, 108, 111
BlsI	GCNGC	5 cut(s)	61, 64, 67, 109, 112
Bme1390I	CCNGG	2 cut(s)	131, 365
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	131, 365
BmsI	GCATC	3 cut(s)	211, 368, 439
BpiI	GAAGAC	2 cut(s)	410, 645
BpuMI	CCSGG	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	660
BsaJI	CCNNGG	1 cut(s)	531
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	537
Bse1I	ACTGG	1 cut(s)	334
Bse8I	GATNNNNATC	1 cut(s)	660
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	531
BseGI	GGATG	2 cut(s)	163, 454
BseJI	GATNNNNATC	1 cut(s)	660
BseLI	CCNNNNNNNGG	1 cut(s)	537
BseMII	CTCAG	2 cut(s)	240, 294
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	112
BseX3I	CGGCCG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	77
Bsh1285I	CGRYCG	2 cut(s)	111, 676
BshFI	GGCC	2 cut(s)	59, 110
BsiEI	CGRYCG	2 cut(s)	111, 676
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	364
BslI	CCNNNNNNNGG	1 cut(s)	537
BsmI	GAATGC	2 cut(s)	41, 463
BsnI	GGCC	2 cut(s)	59, 110
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	4, 689
BspACI	CCGC	5 cut(s)	60, 63, 107, 111, 672
BspANI	GGCC	2 cut(s)	59, 110
BspCNI	CTCAG	2 cut(s)	241, 295
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	531
BssMI	GATC	2 cut(s)	4, 689
BssSI	CACGAG	1 cut(s)	115
Bst2BI	CACGAG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	685
Bst6I	CTCTTC	2 cut(s)	263, 518
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	3 cut(s)	249, 303, 432
BstDSI	CCRYGG	1 cut(s)	531
BstF5I	GGATG	2 cut(s)	163, 454
BstH2I	RGCGCY	1 cut(s)	593
BstHHI	GCGC	2 cut(s)	463, 592
BstKTI	GATC	2 cut(s)	7, 692
BstMBI	GATC	2 cut(s)	4, 689
BstMCI	CGRYCG	2 cut(s)	111, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 458
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	2 cut(s)	129, 363
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	1 cut(s)	77
BstV2I	GAAGAC	2 cut(s)	410, 645
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	59, 110
BtgI	CCRYGG	1 cut(s)	531
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	163, 454
BtsIMutI	CAGTG	2 cut(s)	21, 690
Cac8I	GCNNGC	1 cut(s)	411
CciNI	GCGGCCGC	1 cut(s)	108
CfoI	GCGC	2 cut(s)	463, 592
CseI	GACGC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	3 cut(s)	210, 281, 422
CviJI	RGCY	8 cut(s)	59, 68, 110, 120, 248, 263, 445, 481
CviKI_1	RGCY	8 cut(s)	59, 68, 110, 120, 248, 263, 445, 481
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	3 cut(s)	249, 303, 432
DpnI	GATC	2 cut(s)	6, 691
DpnII	GATC	2 cut(s)	4, 689
EaeI	YGGCCR	2 cut(s)	57, 108
EagI	CGGCCG	1 cut(s)	108
Eam1104I	CTCTTC	2 cut(s)	263, 518
EarI	CTCTTC	2 cut(s)	263, 518
Ecl136II	GAGCTC	1 cut(s)	120
EclXI	CGGCCG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	662
Eco52I	CGGCCG	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	499
EcoICRI	GAGCTC	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	129
EcoRV	GATATC	1 cut(s)	662
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	3 cut(s)	213, 284, 425
FaiI	YATR	7 cut(s)	211, 282, 299, 375, 423, 509, 620
FatI	CATG	3 cut(s)	209, 280, 421
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	5 cut(s)	60, 63, 66, 108, 111
FokI	GGATG	2 cut(s)	170, 461
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	5 cut(s)	60, 63, 66, 108, 111
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	2 cut(s)	462, 591
GluI	GCNGC	5 cut(s)	60, 63, 66, 108, 111
HaeII	RGCGCY	1 cut(s)	593
HaeIII	GGCC	2 cut(s)	59, 110
HapII	CCGG	1 cut(s)	364
HgaI	GACGC	1 cut(s)	415
HhaI	GCGC	2 cut(s)	463, 592
Hin1II	CATG	3 cut(s)	213, 284, 425
Hin6I	GCGC	2 cut(s)	461, 590
HinP1I	GCGC	2 cut(s)	461, 590
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	261
HinfI	GANTC	8 cut(s)	11, 176, 191, 428, 486, 700, 707, 713
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	2 cut(s)	332, 353
Hpy166II	GTNNAC	2 cut(s)	24, 139
Hpy188I	TCNGA	5 cut(s)	47, 485, 518, 712, 718
Hpy188III	TCNNGA	5 cut(s)	8, 554, 610, 665, 704
Hpy8I	GTNNAC	2 cut(s)	24, 139
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	4 cut(s)	97, 268, 475, 662
HpyCH4III	ACNGT	1 cut(s)	685
HpyCH4V	TGCA	4 cut(s)	202, 215, 381, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 458
HpyF3I	CTNAG	3 cut(s)	249, 303, 432
Hsp92II	CATG	3 cut(s)	213, 284, 425
HspAI	GCGC	2 cut(s)	461, 590
Kzo9I	GATC	2 cut(s)	4, 689
LmnI	GCTCC	2 cut(s)	125, 563
LpnPI	CCDG	8 cut(s)	116, 143, 153, 277, 315, 377, 431, 664
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	3 cut(s)	211, 368, 439
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	325, 472
MalI	GATC	2 cut(s)	6, 691
MboI	GATC	2 cut(s)	4, 689
MboII	GAAGA	6 cut(s)	280, 415, 505, 643, 650, 662
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	5 cut(s)	73, 195, 222, 229, 621
MmeI	TCCRAC	3 cut(s)	120, 150, 526
MnlI	CCTC	5 cut(s)	133, 152, 264, 298, 424
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	2 cut(s)	131, 365
Mva1269I	GAATGC	2 cut(s)	41, 463
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	65, 458
NciI	CCSGG	1 cut(s)	365
NdeII	GATC	2 cut(s)	4, 689
NlaIII	CATG	3 cut(s)	213, 284, 425
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	478
NotI	GCGGCCGC	1 cut(s)	108
NspI	RCATGY	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 413
PctI	GAATGC	2 cut(s)	41, 463
PfeI	GAWTC	8 cut(s)	11, 176, 191, 428, 486, 700, 707, 713
PkrI	GCNGC	5 cut(s)	61, 64, 67, 109, 112
Psp124BI	GAGCTC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	122
SalI	GTCGAC	1 cut(s)	137
SatI	GCNGC	5 cut(s)	60, 63, 66, 108, 111
Sau3AI	GATC	2 cut(s)	4, 689
ScrFI	CCNGG	2 cut(s)	131, 365
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	9 cut(s)	122, 144, 250, 265, 345, 447, 483, 542, 619
SfaNI	GCATC	3 cut(s)	211, 368, 439
SfcI	CTRYAG	1 cut(s)	373
Sse9I	AATT	5 cut(s)	73, 195, 222, 229, 621
SsiI	CCGC	5 cut(s)	60, 63, 107, 111, 672
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	129, 363
TaaI	ACNGT	1 cut(s)	685
TaqI	TCGA	5 cut(s)	138, 144, 174, 184, 416
TasI	AATT	5 cut(s)	73, 195, 222, 229, 621
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	4 cut(s)	62, 65, 110, 113
TfiI	GAWTC	8 cut(s)	11, 176, 191, 428, 486, 700, 707, 713
TscAI	CASTG	2 cut(s)	21, 690
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	4 cut(s)	198, 258, 427, 663
TspRI	CASTG	2 cut(s)	21, 690
XapI	RAATTY	1 cut(s)	222
XceI	RCATGY	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.