pycom15g23110

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012891
Physical Location & Seq
Reverse (-)
17166520 .. 17168427
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g23110.3

Sequence Viewer

Length: 1113 bp
ATGAGGAAGCTTTGTCCAAATATTGATAAAGAAGATGGCCTCGAGACGGTTCTTGAGGTCCCCATACCAGAAGAGATGTTCACGAGTATGGGAAGCAATGTGCATTTGCGATGGCAGAACATGTTAACGTGGATGAAGGCTCAAACTTCCGACAAATGGTCTGCGCCGGTCATCGCTGGACGCTTAAACGAGCTGCGGTTCTTGCTTTACCTTGTTGGCTCTCCTCTCATCCCTCTTCAAGTTCAATTGGGACATTCCGTCCATCGTCCAGTTAGAGATTCTTCCATCCAAGCTTCAACAGCCAAATACATCGTGCAACAGTACACAGCAGCAACCGGAGGGCAACCAGCACTGAACTCGGTGACCAGCATGTGTGTGACCGGCGAGGTAAAGATCAGTGCATCGGATTTTCACCAAGGGGACGTGAGCGTTGAGGTGAAAAGGAGCTCAGCCGAGAGGGGTGGTTTCGTGCTGTGGCAAAAGGATCCGGACTTGTGGTGCTTAGAACTTGTTGTGTCTGGCTGCAAGGTTATCTGTGGAAGCAATGGCAAGCTTTCATGGAGGCATTCCTCTAACCAACAAACAGCCGTCTCTCAAGGCCCACCTAGACCTTTGCGCCGTTTTCTACAGGGTTTAGACCCAAGGGCCACGGCCAATCTATTCGCAGATGCAATGTGCATCGGTGAGAAGATCATCCACGACGACGATTGCTTCATCCTCAAGCTAGAAACGAGTCCAGCAATTCGTGAGGCACAGAGTGGTCCAAACTATGAGATAATTCACCACACAATATGGGGATATGTTAGCCAGCGATCGGGTCTACTGGTGAAATTTGAGGACTCAAGGCTACTTAGCATGAAAAACAAGGGGGACGACACGGATGTGTTTTGGGAGACGAGCACCGAGTCGGTCATACAAGATTACAAGTACGTCGACGGCATCAACATTGCTCATAGTGGGAGGACTAGGGTTAAGGTGTTCAGATATGGTGAGCAATCTGCAAACCACAAGAGGGAGATGGAGGAAACGTGGAAGATTGATGAGGTGGATTTTAATATATGGGGTTTGACAATGGAGAGCTTTATGCCCCCTGCTGAAATGAAGCAAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

371

Amino Acids

41.64

Weight (kDa)

6.09

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66740
fragaria_vesca FvH4_1g13560
malus_domestica MD02G1150900.v1.1 MD15G1265400.v1.1
prunus_persica Prupe.7G152200_v2.0.a1
pyrus_communis pycom02g11850 pycom15g23110
rosa_chinensis RchiOBHm_Chr2g0101971
rosa_laevigata RLG00000017120
rosa_multiflora Rmu_co8388187.1_g000001
rosa_roxburghii Rroxscaffold_2G00140880
rosa_rugosa Rorug02G0103400 Rorug02G0103500
rosa_samantha Rh2AG151600 Rh2BG157000 Rh2CG157000 Rh2DG157100
rosa_wichuraiana Rw2G011830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 820, 933
AccIII TCCGGA 1 cut(s) 487
AciI CCGC 1 cut(s) 196
AclWI GGATC 2 cut(s) 479, 492
AcoI YGGCCR 1 cut(s) 651
AcsI RAATTY 1 cut(s) 830
AdeI CACNNNGTG 1 cut(s) 758
AfaI GTAC 2 cut(s) 323, 929
AfiI CCNNNNNNNGG 4 cut(s) 46, 156, 814, 1012
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 3 cut(s) 239, 245, 297
AhdI GACNNNNNGTC 2 cut(s) 157, 257
AjiI CACGTC 1 cut(s) 424
AleI CACNNNNGTG 1 cut(s) 881
AluBI AGCT 7 cut(s) 10, 193, 293, 447, 553, 724, 1080
AluI AGCT 7 cut(s) 10, 193, 293, 447, 553, 724, 1080
Alw21I GWGCWC 2 cut(s) 449, 902
Alw26I GTCTC 3 cut(s) 38, 595, 887
AlwI GGATC 2 cut(s) 479, 492
Ama87I CYCGRG 1 cut(s) 41
Aor13HI TCCGGA 1 cut(s) 487
AoxI GGCC 4 cut(s) 37, 598, 645, 651
ApeKI GCWGC 3 cut(s) 193, 329, 522
ApoI RAATTY 1 cut(s) 830
AspLEI GCGC 2 cut(s) 166, 618
AspS9I GGNCC 4 cut(s) 58, 599, 645, 761
AsuHPI GGTGA 7 cut(s) 373, 404, 448, 695, 773, 838, 1001
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 2 cut(s) 58, 761
BamHI GGATCC 1 cut(s) 484
BanII GRGCYC 1 cut(s) 449
BauI CACGAG 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 449, 902
BbvI GCAGC 3 cut(s) 180, 341, 509
BccI CCATC 5 cut(s) 29, 105, 270, 293, 1012
BceAI ACGGC 4 cut(s) 572, 603, 666, 952
BcgI CGANNNNNNTGC 2 cut(s) 339, 373
BcoDI GTCTC 3 cut(s) 38, 595, 887
BfaI CTAG 3 cut(s) 606, 725, 966
BfmI CTRYAG 1 cut(s) 626
BisI GCNGC 3 cut(s) 194, 330, 523
BlpI GCTNAGC 1 cut(s) 448
BlsI GCNGC 3 cut(s) 195, 331, 524
Bme18I GGWCC 2 cut(s) 58, 761
BmeRI GACNNNNNGTC 2 cut(s) 157, 257
BmeT110I CYCGRG 1 cut(s) 41
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 4 cut(s) 58, 599, 645, 761
BmiI GGNNCC 2 cut(s) 60, 486
BmsI GCATC 4 cut(s) 410, 658, 687, 948
Bpu1102I GCTNAGC 1 cut(s) 448
BpuEI CTTGAG 4 cut(s) 74, 579, 704, 826
BsaJI CCNNGG 3 cut(s) 415, 641, 648
BsaWI WCCGGW 2 cut(s) 335, 487
BsaXI ACNNNNNCTCC 2 cut(s) 1013, 1043
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 156, 814, 1012
Bse118I RCCGGY 2 cut(s) 166, 380
Bse1I ACTGG 2 cut(s) 269, 828
Bse3DI GCAATG 4 cut(s) 103, 550, 678, 945
BseAI TCCGGA 1 cut(s) 487
BseDI CCNNGG 3 cut(s) 415, 641, 648
BseGI GGATG 6 cut(s) 138, 228, 285, 693, 714, 886
BseLI CCNNNNNNNGG 4 cut(s) 46, 156, 814, 1012
BseMI GCAATG 4 cut(s) 103, 550, 678, 945
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 2 cut(s) 269, 828
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 3 cut(s) 180, 341, 509
Bsh1285I CGRYCG 1 cut(s) 815
BshFI GGCC 4 cut(s) 39, 600, 647, 653
BsiEI CGRYCG 1 cut(s) 815
BsiHKAI GWGCWC 2 cut(s) 449, 902
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 4 cut(s) 167, 336, 381, 488
BslFI GGGAC 4 cut(s) 44, 264, 434, 884
BslI CCNNNNNNNGG 4 cut(s) 46, 156, 814, 1012
BsmAI GTCTC 3 cut(s) 38, 595, 887
BsmBI CGTCTC 3 cut(s) 38, 595, 887
BsmFI GGGAC 4 cut(s) 44, 264, 434, 884
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 4 cut(s) 39, 600, 647, 653
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 2 cut(s) 449, 902
Bsp13I TCCGGA 1 cut(s) 487
Bsp143I GATC 4 cut(s) 393, 484, 690, 812
Bsp1720I GCTNAGC 1 cut(s) 448
BspACI CCGC 1 cut(s) 196
BspANI GGCC 4 cut(s) 39, 600, 647, 653
BspCNI CTCAG 1 cut(s) 461
BspEI TCCGGA 1 cut(s) 487
BspLI GGNNCC 2 cut(s) 60, 486
BspPI GGATC 2 cut(s) 479, 492
BsrDI GCAATG 4 cut(s) 103, 550, 678, 945
BsrFI RCCGGY 2 cut(s) 166, 380
BsrI ACTGG 2 cut(s) 269, 828
BssAI RCCGGY 2 cut(s) 166, 380
BssECI CCNNGG 3 cut(s) 415, 641, 648
BssMI GATC 4 cut(s) 393, 484, 690, 812
BssSI CACGAG 1 cut(s) 82
BssT1I CCWWGG 2 cut(s) 415, 641
Bst2BI CACGAG 1 cut(s) 82
Bst4CI ACNGT 2 cut(s) 49, 321
Bst6I CTCTTC 2 cut(s) 66, 240
BstC8I GCNNGC 2 cut(s) 551, 809
BstDEI CTNAG 3 cut(s) 448, 502, 851
BstDSI CCRYGG 1 cut(s) 648
BstEII GGTNACC 1 cut(s) 361
BstF5I GGATG 6 cut(s) 138, 228, 285, 693, 714, 886
BstHHI GCGC 2 cut(s) 166, 618
BstKTI GATC 4 cut(s) 396, 487, 693, 815
BstMAI GTCTC 3 cut(s) 38, 595, 887
BstMBI GATC 4 cut(s) 393, 484, 690, 812
BstMCI CGRYCG 1 cut(s) 815
BstMWI GCNNNNNNNGC 2 cut(s) 202, 299
BstNSI RCATGY 2 cut(s) 124, 373
BstPI GGTNACC 1 cut(s) 361
BstSFI CTRYAG 1 cut(s) 626
BstV1I GCAGC 3 cut(s) 180, 341, 509
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 4 cut(s) 39, 600, 647, 653
BtgI CCRYGG 1 cut(s) 648
BtgZI GCGATG 2 cut(s) 124, 157
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 6 cut(s) 138, 228, 285, 693, 714, 886
BtsIMutI CAGTG 2 cut(s) 350, 403
Cac8I GCNNGC 2 cut(s) 551, 809
CfoI GCGC 2 cut(s) 166, 618
Cfr10I RCCGGY 2 cut(s) 166, 380
Cfr13I GGNCC 4 cut(s) 58, 599, 645, 761
CseI GACGC 1 cut(s) 189
Csp6I GTAC 2 cut(s) 322, 928
CviAII CATG 4 cut(s) 121, 370, 558, 856
CviQI GTAC 2 cut(s) 322, 928
DdeI CTNAG 3 cut(s) 448, 502, 851
DpnI GATC 4 cut(s) 395, 486, 692, 814
DpnII GATC 4 cut(s) 393, 484, 690, 812
DraIII CACNNNGTG 1 cut(s) 758
DriI GACNNNNNGTC 2 cut(s) 157, 257
EaeI YGGCCR 1 cut(s) 651
Eam1104I CTCTTC 2 cut(s) 66, 240
Eam1105I GACNNNNNGTC 2 cut(s) 157, 257
EarI CTCTTC 2 cut(s) 66, 240
Ecl136II GAGCTC 1 cut(s) 447
Eco130I CCWWGG 2 cut(s) 415, 641
Eco24I GRGCYC 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 58, 761
Eco53kI GAGCTC 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 41
Eco91I GGTNACC 1 cut(s) 361
EcoICRI GAGCTC 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 58
EcoO65I GGTNACC 1 cut(s) 361
EcoT14I CCWWGG 2 cut(s) 415, 641
EcoT38I GRGCYC 1 cut(s) 449
ErhI CCWWGG 2 cut(s) 415, 641
Esp3I CGTCTC 3 cut(s) 38, 595, 887
FaeI CATG 4 cut(s) 124, 373, 561, 859
FaqI GGGAC 4 cut(s) 44, 264, 434, 884
FatI CATG 4 cut(s) 120, 369, 557, 855
FblI GTMKAC 2 cut(s) 820, 933
Fnu4HI GCNGC 3 cut(s) 194, 330, 523
FokI GGATG 6 cut(s) 145, 215, 272, 680, 701, 893
FriOI GRGCYC 1 cut(s) 449
Fsp4HI GCNGC 3 cut(s) 194, 330, 523
FspBI CTAG 3 cut(s) 606, 725, 966
GlaI GCGC 2 cut(s) 165, 617
GluI GCNGC 3 cut(s) 194, 330, 523
HaeIII GGCC 4 cut(s) 39, 600, 647, 653
HapII CCGG 4 cut(s) 167, 336, 381, 488
HgaI GACGC 1 cut(s) 189
HhaI GCGC 2 cut(s) 166, 618
Hin1II CATG 4 cut(s) 124, 373, 561, 859
Hin6I GCGC 2 cut(s) 164, 616
HinP1I GCGC 2 cut(s) 164, 616
HincII GTYRAC 2 cut(s) 126, 934
HindII GTYRAC 2 cut(s) 126, 934
HindIII AAGCTT 3 cut(s) 8, 291, 551
HinfI GANTC 4 cut(s) 278, 733, 839, 905
HpaI GTTAAC 1 cut(s) 126
HpaII CCGG 4 cut(s) 167, 336, 381, 488
HphI GGTGA 7 cut(s) 373, 404, 448, 695, 773, 838, 1001
Hpy166II GTNNAC 5 cut(s) 81, 126, 324, 821, 934
Hpy188I TCNGA 3 cut(s) 151, 406, 983
Hpy188III TCNNGA 5 cut(s) 43, 53, 82, 488, 746
Hpy8I GTNNAC 5 cut(s) 81, 126, 324, 821, 934
Hpy99I CGWCG 4 cut(s) 704, 707, 935, 938
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 2 cut(s) 49, 321
HpyCH4IV ACGT 4 cut(s) 128, 423, 930, 1028
HpyCH4V TGCA 7 cut(s) 103, 316, 401, 525, 671, 678, 1001
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 299
HpyF3I CTNAG 3 cut(s) 448, 502, 851
HpySE526I ACGT 4 cut(s) 128, 423, 930, 1028
Hsp92II CATG 4 cut(s) 124, 373, 561, 859
HspAI GCGC 2 cut(s) 164, 616
Kpn2I TCCGGA 1 cut(s) 487
KspAI GTTAAC 1 cut(s) 126
Kzo9I GATC 4 cut(s) 393, 484, 690, 812
LmnI GCTCC 1 cut(s) 444
Lsp1109I GCAGC 3 cut(s) 180, 341, 509
LweI GCATC 4 cut(s) 410, 658, 687, 948
MaeI CTAG 3 cut(s) 606, 725, 966
MaeII ACGT 4 cut(s) 128, 423, 930, 1028
MaeIII GTNAC 2 cut(s) 361, 376
MalI GATC 4 cut(s) 395, 486, 692, 814
MboI GATC 4 cut(s) 393, 484, 690, 812
MboII GAAGA 6 cut(s) 44, 83, 227, 273, 700, 1045
MfeI CAATTG 1 cut(s) 245
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 2 cut(s) 449, 902
MluCI AATT 4 cut(s) 245, 741, 777, 830
MlyI GAGTC 3 cut(s) 742, 833, 914
MmeI TCCRAC 1 cut(s) 174
MroI TCCGGA 1 cut(s) 487
MseI TTAA 4 cut(s) 125, 185, 972, 1053
MslI CAYNNNNRTG 3 cut(s) 86, 374, 881
MspI CCGG 4 cut(s) 167, 336, 381, 488
MunI CAATTG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 565
MwoI GCNNNNNNNGC 2 cut(s) 202, 299
NdeII GATC 4 cut(s) 393, 484, 690, 812
NlaIII CATG 4 cut(s) 124, 373, 561, 859
NlaIV GGNNCC 2 cut(s) 60, 486
NmeAIII GCCGAG 1 cut(s) 478
NmuCI GTSAC 2 cut(s) 361, 376
NspI RCATGY 2 cut(s) 124, 373
OliI CACNNNNGTG 1 cut(s) 881
PaeR7I CTCGAG 1 cut(s) 41
PciI ACATGT 1 cut(s) 120
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 3 cut(s) 195, 331, 524
Ple19I CGATCG 1 cut(s) 815
PleI GAGTC 3 cut(s) 741, 833, 913
PpsI GAGTC 3 cut(s) 741, 833, 913
PpuMI RGGWCCY 1 cut(s) 58
PscI ACATGT 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 449
Psp5II RGGWCCY 1 cut(s) 58
PspEI GGTNACC 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 60, 486
PspPI GGNCC 4 cut(s) 58, 599, 645, 761
PspPPI RGGWCCY 1 cut(s) 58
PsuI RGATCY 1 cut(s) 484
PvuI CGATCG 1 cut(s) 815
RsaI GTAC 2 cut(s) 323, 929
RsaNI GTAC 2 cut(s) 322, 928
RseI CAYNNNNRTG 3 cut(s) 86, 374, 881
SacI GAGCTC 1 cut(s) 449
SalI GTCGAC 1 cut(s) 932
SaqAI TTAA 4 cut(s) 125, 185, 972, 1053
SatI GCNGC 3 cut(s) 194, 330, 523
Sau3AI GATC 4 cut(s) 393, 484, 690, 812
Sau96I GGNCC 4 cut(s) 58, 599, 645, 761
SchI GAGTC 3 cut(s) 742, 833, 914
SduI GDGCHC 2 cut(s) 449, 902
SfaNI GCATC 4 cut(s) 410, 658, 687, 948
SfcI CTRYAG 1 cut(s) 626
Sfr274I CTCGAG 1 cut(s) 41
SgrDI CGTCGACG 1 cut(s) 932
SinI GGWCC 2 cut(s) 58, 761
SlaI CTCGAG 1 cut(s) 41
SmiMI CAYNNNNRTG 3 cut(s) 86, 374, 881
SmlI CTYRAG 5 cut(s) 41, 53, 594, 719, 841
SmoI CTYRAG 5 cut(s) 41, 53, 594, 719, 841
Sse9I AATT 4 cut(s) 245, 741, 777, 830
SsiI CCGC 1 cut(s) 196
SspI AATATT 1 cut(s) 22
SspMI CTAG 3 cut(s) 606, 725, 966
SstI GAGCTC 1 cut(s) 449
StyI CCWWGG 2 cut(s) 415, 641
TaaI ACNGT 2 cut(s) 49, 321
TaiI ACGT 4 cut(s) 131, 426, 933, 1031
TaqI TCGA 2 cut(s) 42, 933
TaqII GACCGA 1 cut(s) 898
TasI AATT 4 cut(s) 245, 741, 777, 830
TatI WGTACW 1 cut(s) 321
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 4 cut(s) 125, 185, 972, 1053
Tru9I TTAA 4 cut(s) 125, 185, 972, 1053
TscAI CASTG 2 cut(s) 357, 403
TseFI GTSAC 2 cut(s) 361, 376
TseI GCWGC 3 cut(s) 193, 329, 522
Tsp45I GTSAC 2 cut(s) 361, 376
TspDTI ATGAA 4 cut(s) 149, 546, 703, 872
TspGWI ACGGA 2 cut(s) 247, 893
TspRI CASTG 2 cut(s) 357, 403
VpaK11BI GGWCC 2 cut(s) 58, 761
XapI RAATTY 1 cut(s) 830
XceI RCATGY 2 cut(s) 124, 373
XhoI CTCGAG 1 cut(s) 41
XmiI GTMKAC 2 cut(s) 820, 933
XspI CTAG 3 cut(s) 606, 725, 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.