Rmu_co8388187.1_g000001

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8388187.1
OG0012891
Physical Location & Seq
Forward (+)
1 .. 1141
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8388187.1_g000001.1.cds

Sequence Viewer

Length: 735 bp
gttaagattagtgcatcggattttcaccaaggggacctgagccttgaggtgaaaaagagcgcggccgagagtggcggattcttactttggcaaaagaatccagacttgtggtgcttagagcttattgtgtctggctgcaaggtcatctgcggaagcaatggcaagctttcatggcggcattcctctaaccaacaaacacccatctcacaaggtcctcctagacccttgcgccgttttctccagggtttggacccaagggctacggcccttctattcgcagatgcaatgtgcatcggcgagaagatcatcaacaacgacgattgcttcatactcaagctcgaaacaagtccagccattcgcgagcagcaaagcggtccaaactacgagataatccaccacacaatctggggatacttcagccaacgttctggtctccttatacaattcgaggactcaaggctgcttaggatgaccaacaaaggagacgatacagatgtgttctgggagaccagcactgagtctgttatacatgactataagtacgtcgatggattgaacattgcgcacagcggaagaacacgagtcaaggttttcagatacggtgagcaatctgcaaaccacaaaagggagatggaagaaacgtggaaaattcatgaggtggattttaacatttggggtttgacaatggagtgctttctgcctcctgctgatatagataataagaagcaggaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

244

Amino Acids

27.87

Weight (kDa)

5.93

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66740
fragaria_vesca FvH4_1g13560
malus_domestica MD02G1150900.v1.1 MD15G1265400.v1.1
prunus_persica Prupe.7G152200_v2.0.a1
pyrus_communis pycom02g11850 pycom15g23110
rosa_chinensis RchiOBHm_Chr2g0101971
rosa_laevigata RLG00000017120
rosa_multiflora Rmu_co8388187.1_g000001
rosa_roxburghii Rroxscaffold_2G00140880
rosa_rugosa Rorug02G0103400 Rorug02G0103500
rosa_samantha Rh2AG151600 Rh2BG157000 Rh2CG157000 Rh2DG157100
rosa_wichuraiana Rw2G011830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 564
AccB7I CCANNNNNTGG 1 cut(s) 247
AccII CGCG 2 cut(s) 62, 360
AciI CCGC 6 cut(s) 62, 75, 150, 175, 372, 570
AclI AACGTT 1 cut(s) 424
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 648
AcuI CTGAAG 1 cut(s) 400
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 2 cut(s) 247, 625
AgsI TTSAA 1 cut(s) 556
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 3 cut(s) 121, 166, 337
AluI AGCT 3 cut(s) 121, 166, 337
Alw26I GTCTC 3 cut(s) 437, 477, 500
AoxI GGCC 2 cut(s) 63, 264
ApeKI GCWGC 3 cut(s) 135, 364, 460
ApoI RAATTY 1 cut(s) 648
AspLEI GCGC 3 cut(s) 62, 231, 565
AspS9I GGNCC 5 cut(s) 34, 212, 250, 265, 374
AsuHPI GGTGA 3 cut(s) 17, 61, 614
AvaII GGWCC 4 cut(s) 34, 212, 250, 374
BaeI ACNNNNGTAYC 2 cut(s) 480, 513
BauI CACGAG 1 cut(s) 579
BbvI GCAGC 3 cut(s) 122, 376, 447
BccI CCATC 3 cut(s) 209, 542, 625
BceAI ACGGC 2 cut(s) 216, 279
BciT130I CCWGG 1 cut(s) 242
BciVI GTATCC 1 cut(s) 404
BcoDI GTCTC 3 cut(s) 437, 477, 500
BfaI CTAG 1 cut(s) 219
BfuI GTATCC 1 cut(s) 404
BisI GCNGC 5 cut(s) 63, 136, 176, 365, 461
BlsI GCNGC 5 cut(s) 64, 137, 177, 366, 462
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 4 cut(s) 34, 212, 250, 374
BmgT120I GGNCC 5 cut(s) 34, 212, 250, 265, 374
BmiI GGNNCC 2 cut(s) 35, 252
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 3 cut(s) 23, 271, 300
BpmI CTGGAG 1 cut(s) 224
Bpu10I CCTNAGC 2 cut(s) 38, 464
BpuEI CTTGAG 3 cut(s) 65, 317, 439
BsaI GGTCTC 2 cut(s) 437, 500
BsaJI CCNNGG 3 cut(s) 28, 241, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 625
Bse3DI GCAATG 3 cut(s) 163, 291, 558
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 3 cut(s) 28, 241, 254
BseGI GGATG 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 247, 625
BseMI GCAATG 3 cut(s) 163, 291, 558
BseMII CTCAG 2 cut(s) 29, 507
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 3 cut(s) 122, 376, 447
Bsh1236I CGCG 2 cut(s) 62, 360
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 65, 266
BsiEI CGRYCG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 247, 625
BsmAI GTCTC 3 cut(s) 437, 477, 500
BsmBI CGTCTC 1 cut(s) 477
BsmFI GGGAC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 2 cut(s) 65, 266
Bso31I GGTCTC 2 cut(s) 437, 500
Bsp143I GATC 1 cut(s) 303
Bsp68I TCGCGA 1 cut(s) 360
BspACI CCGC 6 cut(s) 62, 75, 150, 175, 372, 570
BspANI GGCC 2 cut(s) 65, 266
BspCNI CTCAG 2 cut(s) 30, 508
BspFNI CGCG 2 cut(s) 62, 360
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 2 cut(s) 35, 252
BspTNI GGTCTC 2 cut(s) 437, 500
BsrDI GCAATG 3 cut(s) 163, 291, 558
BssECI CCNNGG 3 cut(s) 28, 241, 254
BssMI GATC 1 cut(s) 303
BssSI CACGAG 1 cut(s) 579
BssT1I CCWWGG 2 cut(s) 28, 254
Bst2BI CACGAG 1 cut(s) 579
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 164, 362
BstDEI CTNAG 4 cut(s) 38, 115, 464, 516
BstF5I GGATG 1 cut(s) 474
BstFNI CGCG 2 cut(s) 62, 360
BstHHI GCGC 3 cut(s) 62, 231, 565
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 3 cut(s) 437, 477, 500
BstMBI GATC 1 cut(s) 303
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 240
BstUI CGCG 2 cut(s) 62, 360
BstV1I GCAGC 3 cut(s) 122, 376, 447
BstXI CCANNNNNNTGG 2 cut(s) 108, 428
BstZI CGGCCG 1 cut(s) 63
BsuI GTATCC 1 cut(s) 404
BsuRI GGCC 2 cut(s) 65, 266
BtsCI GGATG 1 cut(s) 474
BtsIMutI CAGTG 1 cut(s) 513
BtuMI TCGCGA 1 cut(s) 360
Cac8I GCNNGC 2 cut(s) 164, 362
CciI TCATGA 1 cut(s) 652
CfoI GCGC 3 cut(s) 62, 231, 565
Cfr13I GGNCC 5 cut(s) 34, 212, 250, 265, 374
Csp6I GTAC 1 cut(s) 541
CviAII CATG 3 cut(s) 171, 530, 653
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 4 cut(s) 38, 115, 464, 516
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 63
EagI CGGCCG 1 cut(s) 63
EciI GGCGGA 1 cut(s) 90
EclXI CGGCCG 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 28, 254
Eco31I GGTCTC 2 cut(s) 437, 500
Eco47I GGWCC 4 cut(s) 34, 212, 250, 374
Eco52I CGGCCG 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 400
EcoO109I RGGNCCY 2 cut(s) 34, 212
EcoRII CCWGG 1 cut(s) 240
EcoT14I CCWWGG 2 cut(s) 28, 254
ErhI CCWWGG 2 cut(s) 28, 254
Esp3I CGTCTC 1 cut(s) 477
FaeI CATG 3 cut(s) 174, 533, 656
FaiI YATR 8 cut(s) 172, 329, 440, 527, 531, 537, 654, 713
FaqI GGGAC 1 cut(s) 47
FatI CATG 3 cut(s) 170, 529, 652
Fnu4HI GCNGC 5 cut(s) 63, 136, 176, 365, 461
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 5 cut(s) 63, 136, 176, 365, 461
FspBI CTAG 1 cut(s) 219
FspI TGCGCA 1 cut(s) 564
GlaI GCGC 3 cut(s) 61, 230, 564
GluI GCNGC 5 cut(s) 63, 136, 176, 365, 461
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 2 cut(s) 65, 266
HhaI GCGC 3 cut(s) 62, 231, 565
Hin1II CATG 3 cut(s) 174, 533, 656
Hin6I GCGC 3 cut(s) 60, 229, 563
HinP1I GCGC 3 cut(s) 60, 229, 563
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 5 cut(s) 78, 97, 452, 518, 582
HphI GGTGA 3 cut(s) 17, 61, 614
Hpy188I TCNGA 2 cut(s) 19, 596
Hpy188III TCNNGA 3 cut(s) 101, 359, 653
Hpy99I CGWCG 2 cut(s) 320, 548
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 1 cut(s) 602
HpyCH4IV ACGT 3 cut(s) 424, 543, 641
HpyCH4V TGCA 5 cut(s) 14, 138, 284, 291, 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 4 cut(s) 38, 115, 464, 516
HpySE526I ACGT 3 cut(s) 424, 543, 641
Hsp92II CATG 3 cut(s) 174, 533, 656
HspAI GCGC 3 cut(s) 60, 229, 563
Kzo9I GATC 1 cut(s) 303
Lsp1109I GCAGC 3 cut(s) 122, 376, 447
LweI GCATC 3 cut(s) 23, 271, 300
MaeI CTAG 1 cut(s) 219
MaeII ACGT 3 cut(s) 424, 543, 641
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MboII GAAGA 3 cut(s) 313, 585, 647
MluCI AATT 2 cut(s) 443, 648
MlyI GAGTC 3 cut(s) 446, 527, 591
MnlI CCTC 6 cut(s) 40, 193, 225, 442, 649, 711
MseI TTAA 2 cut(s) 3, 666
MspA1I CMGCKG 1 cut(s) 570
MspR9I CCNGG 1 cut(s) 242
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 1 cut(s) 242
MvnI CGCG 2 cut(s) 62, 360
MwoI GCNNNNNNNGC 1 cut(s) 172
NdeII GATC 1 cut(s) 303
NlaIII CATG 3 cut(s) 174, 533, 656
NlaIV GGNNCC 2 cut(s) 35, 252
NmeAIII GCCGAG 1 cut(s) 91
NruI TCGCGA 1 cut(s) 360
NsbI TGCGCA 1 cut(s) 564
PagI TCATGA 1 cut(s) 652
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 2 cut(s) 78, 97
PflMI CCANNNNNTGG 1 cut(s) 247
PkrI GCNGC 5 cut(s) 64, 137, 177, 366, 462
PleI GAGTC 3 cut(s) 446, 526, 590
PpsI GAGTC 3 cut(s) 446, 526, 590
PpuMI RGGWCCY 2 cut(s) 34, 212
Psp1406I AACGTT 1 cut(s) 424
Psp5II RGGWCCY 2 cut(s) 34, 212
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 35, 252
PspPI GGNCC 5 cut(s) 34, 212, 250, 265, 374
PspPPI RGGWCCY 2 cut(s) 34, 212
RruI TCGCGA 1 cut(s) 360
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
SaqAI TTAA 2 cut(s) 3, 666
SatI GCNGC 5 cut(s) 63, 136, 176, 365, 461
Sau3AI GATC 1 cut(s) 303
Sau96I GGNCC 5 cut(s) 34, 212, 250, 265, 374
SchI GAGTC 3 cut(s) 446, 527, 591
ScrFI CCNGG 1 cut(s) 242
SfaNI GCATC 3 cut(s) 23, 271, 300
SinI GGWCC 4 cut(s) 34, 212, 250, 374
SmlI CTYRAG 3 cut(s) 44, 332, 454
SmoI CTYRAG 3 cut(s) 44, 332, 454
Sse9I AATT 2 cut(s) 443, 648
SsiI CCGC 6 cut(s) 62, 75, 150, 175, 372, 570
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 240
StyI CCWWGG 2 cut(s) 28, 254
TaaI ACNGT 1 cut(s) 602
TaiI ACGT 3 cut(s) 427, 546, 644
TaqI TCGA 3 cut(s) 339, 447, 546
TasI AATT 2 cut(s) 443, 648
TauI GCSGC 2 cut(s) 65, 178
TfiI GAWTC 2 cut(s) 78, 97
Tru1I TTAA 2 cut(s) 3, 666
Tru9I TTAA 2 cut(s) 3, 666
TscAI CASTG 1 cut(s) 520
TseI GCWGC 3 cut(s) 135, 364, 460
TspDTI ATGAA 3 cut(s) 159, 316, 641
TspRI CASTG 1 cut(s) 520
Van91I CCANNNNNTGG 1 cut(s) 247
VpaK11BI GGWCC 4 cut(s) 34, 212, 250, 374
XapI RAATTY 1 cut(s) 648
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.