RchiOBHm_Chr2g0101971

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012891
Physical Location & Seq
Forward (+)
13382553 .. 13384632
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47648

Sequence Viewer

Length: 1122 bp
ATGAGGAAGCTTTGTCCGAATATTGATAGAGACGATGGCCTCGAGACTGTTCTCGAGGTCCCCATACCGGAAGAGATGTTCACTAGTATGGGAAGCAATGTCACATTACGGTGGCAAAACATGTTGACGTGGATGAAGGCTCAAACCTCTGACAAATGGTCTGCGCCGGTCATTGCCGGACGCTTTAATGAGCTGCGTTTCTTGCTTTACCTTGTAGGCTCTCCTCTTATCCCTCTTCAAGTTCAGTTGGGTCATTCCGTCCACCGTCCAGTTCGAGATTCTTCAATTCAAGCTTCAACGGCCAAATATATTGTGCAACAATACACAGCGGCTACGGGAGGGCAAGCGGCATTGAACTCAGTAACCAGCATGTGTGTTACTGGGCAGGTTAAGATTAGTGCATCGGATTTTCACCAAGGGGACCTGAGCCTTGAGGTGAAAAAGAGCGCGGCCGAGAGTGGCGGGTTCTTACTTTGGCAAAAGAATCCAGACTTGTGGTGCTTAGAGCTTATTGTGTCTGGCTGCAAGGTCATCTGCGGAAGCAACGGCAAGCTTTCATGGCGGCATTCCTCTAACCAACAAACACCCATCTCACAAGGTCCTCCTAGACCCTTGCGCCGTTTTCTCCAGGGTTTGGACCCAAGGGCTACGGCCCTTCTATTCGCAGATGCAATGTGCATCGGCGAGAAGATCATCAACAACGACGATTGCTTCATACTCAAGCTCGAAACAAGTCCAGCCATTCGCGAGCAGCAAAGCGGTCCAAATTACGAGATAATCCACCACACAATCTGGGGATACTTCAGCCAACGTTCTGGTCTCCTTATACAATTCGAGGACTCAAGGCTGCTTAGGATGACCAACAAAGGAGACGATACAGATGTGTTCTGGGAGACCAGCACTGAGTCTGTTATACATGACTATAAGTACGTCGATGGACTGAACATTGCGCACAGCGGAAGAACACGAGTCAAGGTTTTCAGATACGGTGAGCAATCTGCAAACCACAAAAGGGAGATGGAAGAAACGTGGAAAATTCATGAGGTGGATTTTAACATTTGGGGTTTGACAATGGAGTGCTTTCTGCCTCCTGCTGATATAGATAATAAGAAGCAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

373

Amino Acids

42.17

Weight (kDa)

6.22

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 124 - 364 2.7e-114 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66740
fragaria_vesca FvH4_1g13560
malus_domestica MD02G1150900.v1.1 MD15G1265400.v1.1
prunus_persica Prupe.7G152200_v2.0.a1
pyrus_communis pycom02g11850 pycom15g23110
rosa_chinensis RchiOBHm_Chr2g0101971
rosa_laevigata RLG00000017120
rosa_multiflora Rmu_co8388187.1_g000001
rosa_roxburghii Rroxscaffold_2G00140880
rosa_rugosa Rorug02G0103400 Rorug02G0103500
rosa_samantha Rh2AG151600 Rh2BG157000 Rh2CG157000 Rh2DG157100
rosa_wichuraiana Rw2G011830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 951
Acc36I ACCTGC 1 cut(s) 376
AccB7I CCANNNNNTGG 1 cut(s) 634
AccII CGCG 2 cut(s) 449, 747
AciI CCGC 8 cut(s) 329, 347, 449, 462, 537, 562, 759, 957
AclI AACGTT 1 cut(s) 811
AcoI YGGCCR 2 cut(s) 300, 450
AcsI RAATTY 1 cut(s) 1035
AcuI CTGAAG 1 cut(s) 787
AfaI GTAC 1 cut(s) 929
AfiI CCNNNNNNNGG 3 cut(s) 67, 634, 1012
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 5 cut(s) 239, 285, 290, 297, 355
AhdI GACNNNNNGTC 1 cut(s) 157
AhlI ACTAGT 1 cut(s) 83
AjiI CACGTC 1 cut(s) 129
AjnI CCWGG 1 cut(s) 627
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
AluBI AGCT 6 cut(s) 10, 193, 293, 508, 553, 724
AluI AGCT 6 cut(s) 10, 193, 293, 508, 553, 724
Alw26I GTCTC 5 cut(s) 24, 38, 824, 864, 887
Ama87I CYCGRG 2 cut(s) 41, 53
AoxI GGCC 4 cut(s) 37, 300, 450, 651
ApeKI GCWGC 4 cut(s) 193, 522, 751, 847
ApoI RAATTY 1 cut(s) 1035
AspLEI GCGC 4 cut(s) 166, 449, 618, 952
AspS9I GGNCC 6 cut(s) 58, 421, 599, 637, 652, 761
AsuHPI GGTGA 3 cut(s) 404, 448, 1001
AvaI CYCGRG 2 cut(s) 41, 53
AvaII GGWCC 5 cut(s) 58, 421, 599, 637, 761
BaeI ACNNNNGTAYC 2 cut(s) 867, 900
BauI CACGAG 1 cut(s) 966
BbvI GCAGC 4 cut(s) 180, 509, 763, 834
BccI CCATC 4 cut(s) 29, 596, 929, 1012
BceAI ACGGC 4 cut(s) 315, 562, 603, 666
BciT130I CCWGG 1 cut(s) 629
BciVI GTATCC 1 cut(s) 791
BcoDI GTCTC 5 cut(s) 24, 38, 824, 864, 887
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 2 cut(s) 84, 606
BfuAI ACCTGC 1 cut(s) 376
BfuI GTATCC 1 cut(s) 791
BisI GCNGC 8 cut(s) 194, 330, 348, 450, 523, 563, 752, 848
BlsI GCNGC 8 cut(s) 195, 331, 349, 451, 524, 564, 753, 849
Bme1390I CCNGG 1 cut(s) 629
Bme18I GGWCC 5 cut(s) 58, 421, 599, 637, 761
BmeRI GACNNNNNGTC 1 cut(s) 157
BmeT110I CYCGRG 2 cut(s) 41, 53
BmgBI CACGTC 1 cut(s) 129
BmgT120I GGNCC 6 cut(s) 58, 421, 599, 637, 652, 761
BmiI GGNNCC 3 cut(s) 60, 422, 639
BmrFI CCNGG 1 cut(s) 629
BmrI ACTGGG 1 cut(s) 390
BmsI GCATC 3 cut(s) 410, 658, 687
BmuI ACTGGG 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 611
Bpu10I CCTNAGC 2 cut(s) 425, 851
BpuEI CTTGAG 3 cut(s) 452, 704, 826
BsaI GGTCTC 2 cut(s) 824, 887
BsaJI CCNNGG 3 cut(s) 415, 628, 641
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 634, 1012
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 2 cut(s) 269, 385
Bse3DI GCAATG 4 cut(s) 103, 171, 678, 945
BseBI CCWGG 1 cut(s) 629
BseDI CCNNGG 3 cut(s) 415, 628, 641
BseGI GGATG 2 cut(s) 138, 861
BseLI CCNNNNNNNGG 3 cut(s) 67, 634, 1012
BseMI GCAATG 4 cut(s) 103, 171, 678, 945
BseMII CTCAG 3 cut(s) 372, 416, 894
BseNI ACTGG 2 cut(s) 269, 385
BseRI GAGGAG 1 cut(s) 213
BseX3I CGGCCG 1 cut(s) 450
BseXI GCAGC 4 cut(s) 180, 509, 763, 834
Bsh1236I CGCG 2 cut(s) 449, 747
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 4 cut(s) 39, 302, 452, 653
BsiEI CGRYCG 1 cut(s) 453
BsiHKCI CYCGRG 2 cut(s) 41, 53
BsiSI CCGG 3 cut(s) 68, 167, 177
BslFI GGGAC 2 cut(s) 44, 434
BslI CCNNNNNNNGG 3 cut(s) 67, 634, 1012
BsmAI GTCTC 5 cut(s) 24, 38, 824, 864, 887
BsmBI CGTCTC 2 cut(s) 24, 864
BsmFI GGGAC 2 cut(s) 44, 434
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 4 cut(s) 39, 302, 452, 653
Bso31I GGTCTC 2 cut(s) 824, 887
BsoBI CYCGRG 2 cut(s) 41, 53
Bsp143I GATC 1 cut(s) 690
Bsp68I TCGCGA 1 cut(s) 747
BspACI CCGC 8 cut(s) 329, 347, 449, 462, 537, 562, 759, 957
BspANI GGCC 4 cut(s) 39, 302, 452, 653
BspCNI CTCAG 3 cut(s) 371, 417, 895
BspFNI CGCG 2 cut(s) 449, 747
BspHI TCATGA 1 cut(s) 1039
BspLI GGNNCC 3 cut(s) 60, 422, 639
BspMI ACCTGC 1 cut(s) 376
BspTNI GGTCTC 2 cut(s) 824, 887
BsrDI GCAATG 4 cut(s) 103, 171, 678, 945
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 2 cut(s) 269, 385
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 3 cut(s) 415, 628, 641
BssMI GATC 1 cut(s) 690
BssSI CACGAG 1 cut(s) 966
BssT1I CCWWGG 2 cut(s) 415, 641
Bst2BI CACGAG 1 cut(s) 966
Bst2UI CCWGG 1 cut(s) 629
Bst4CI ACNGT 4 cut(s) 49, 111, 266, 989
Bst6I CTCTTC 2 cut(s) 66, 240
BstC8I GCNNGC 3 cut(s) 345, 551, 749
BstDEI CTNAG 5 cut(s) 358, 425, 502, 851, 903
BstF5I GGATG 2 cut(s) 138, 861
BstFNI CGCG 2 cut(s) 449, 747
BstHHI GCGC 4 cut(s) 166, 449, 618, 952
BstKTI GATC 1 cut(s) 693
BstMAI GTCTC 5 cut(s) 24, 38, 824, 864, 887
BstMBI GATC 1 cut(s) 690
BstMCI CGRYCG 1 cut(s) 453
BstMWI GCNNNNNNNGC 3 cut(s) 202, 299, 559
BstNI CCWGG 1 cut(s) 629
BstNSI RCATGY 2 cut(s) 124, 373
BstSCI CCNGG 1 cut(s) 627
BstUI CGCG 2 cut(s) 449, 747
BstV1I GCAGC 4 cut(s) 180, 509, 763, 834
BstXI CCANNNNNNTGG 2 cut(s) 495, 815
BstZI CGGCCG 1 cut(s) 450
BsuI GTATCC 1 cut(s) 791
BsuRI GGCC 4 cut(s) 39, 302, 452, 653
BtrI CACGTC 1 cut(s) 129
BtsCI GGATG 2 cut(s) 138, 861
BtsIMutI CAGTG 1 cut(s) 900
BtuMI TCGCGA 1 cut(s) 747
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 3 cut(s) 345, 551, 749
CciI TCATGA 1 cut(s) 1039
CfoI GCGC 4 cut(s) 166, 449, 618, 952
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 6 cut(s) 58, 421, 599, 637, 652, 761
CseI GACGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 928
CviAII CATG 5 cut(s) 121, 370, 558, 917, 1040
CviQI GTAC 1 cut(s) 928
DdeI CTNAG 5 cut(s) 358, 425, 502, 851, 903
DpnI GATC 1 cut(s) 692
DpnII GATC 1 cut(s) 690
DriI GACNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 2 cut(s) 300, 450
EagI CGGCCG 1 cut(s) 450
Eam1104I CTCTTC 2 cut(s) 66, 240
Eam1105I GACNNNNNGTC 1 cut(s) 157
EarI CTCTTC 2 cut(s) 66, 240
EclXI CGGCCG 1 cut(s) 450
Eco130I CCWWGG 2 cut(s) 415, 641
Eco31I GGTCTC 2 cut(s) 824, 887
Eco47I GGWCC 5 cut(s) 58, 421, 599, 637, 761
Eco52I CGGCCG 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 787
Eco88I CYCGRG 2 cut(s) 41, 53
EcoO109I RGGNCCY 3 cut(s) 58, 421, 599
EcoRII CCWGG 1 cut(s) 627
EcoT14I CCWWGG 2 cut(s) 415, 641
ErhI CCWWGG 2 cut(s) 415, 641
Esp3I CGTCTC 2 cut(s) 24, 864
FaeI CATG 5 cut(s) 124, 373, 561, 920, 1043
FaqI GGGAC 2 cut(s) 44, 434
FatI CATG 5 cut(s) 120, 369, 557, 916, 1039
FauI CCCGC 1 cut(s) 455
Fnu4HI GCNGC 8 cut(s) 194, 330, 348, 450, 523, 563, 752, 848
FokI GGATG 2 cut(s) 145, 868
Fsp4HI GCNGC 8 cut(s) 194, 330, 348, 450, 523, 563, 752, 848
FspBI CTAG 2 cut(s) 84, 606
FspI TGCGCA 1 cut(s) 951
GlaI GCGC 4 cut(s) 165, 448, 617, 951
GluI GCNGC 8 cut(s) 194, 330, 348, 450, 523, 563, 752, 848
GsuI CTGGAG 1 cut(s) 611
HaeIII GGCC 4 cut(s) 39, 302, 452, 653
HapII CCGG 3 cut(s) 68, 167, 177
HgaI GACGC 1 cut(s) 189
HhaI GCGC 4 cut(s) 166, 449, 618, 952
Hin1II CATG 5 cut(s) 124, 373, 561, 920, 1043
Hin6I GCGC 4 cut(s) 164, 447, 616, 950
HinP1I GCGC 4 cut(s) 164, 447, 616, 950
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HindIII AAGCTT 3 cut(s) 8, 291, 551
HinfI GANTC 5 cut(s) 278, 484, 839, 905, 969
HpaII CCGG 3 cut(s) 68, 167, 177
HphI GGTGA 3 cut(s) 404, 448, 1001
Hpy166II GTNNAC 3 cut(s) 81, 126, 262
Hpy188I TCNGA 4 cut(s) 18, 151, 406, 983
Hpy188III TCNNGA 6 cut(s) 43, 53, 275, 488, 746, 1040
Hpy8I GTNNAC 3 cut(s) 81, 126, 262
Hpy99I CGWCG 2 cut(s) 707, 935
HpyAV CCTTC 2 cut(s) 130, 665
HpyCH4III ACNGT 4 cut(s) 49, 111, 266, 989
HpyCH4IV ACGT 4 cut(s) 128, 811, 930, 1028
HpyCH4V TGCA 6 cut(s) 316, 401, 525, 671, 678, 1001
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 299, 559
HpyF3I CTNAG 5 cut(s) 358, 425, 502, 851, 903
HpySE526I ACGT 4 cut(s) 128, 811, 930, 1028
Hsp92II CATG 5 cut(s) 124, 373, 561, 920, 1043
HspAI GCGC 4 cut(s) 164, 447, 616, 950
Kzo9I GATC 1 cut(s) 690
Lsp1109I GCAGC 4 cut(s) 180, 509, 763, 834
LweI GCATC 3 cut(s) 410, 658, 687
MaeI CTAG 2 cut(s) 84, 606
MaeII ACGT 4 cut(s) 128, 811, 930, 1028
MaeIII GTNAC 3 cut(s) 100, 361, 376
MalI GATC 1 cut(s) 692
MboI GATC 1 cut(s) 690
MboII GAAGA 6 cut(s) 83, 227, 273, 700, 972, 1034
MluCI AATT 4 cut(s) 285, 766, 830, 1035
MlyI GAGTC 3 cut(s) 833, 914, 978
MseI TTAA 3 cut(s) 186, 390, 1053
MslI CAYNNNNRTG 2 cut(s) 86, 109
MspA1I CMGCKG 2 cut(s) 329, 957
MspI CCGG 3 cut(s) 68, 167, 177
MspR9I CCNGG 1 cut(s) 629
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 1 cut(s) 629
MvnI CGCG 2 cut(s) 449, 747
MwoI GCNNNNNNNGC 3 cut(s) 202, 299, 559
NdeII GATC 1 cut(s) 690
NlaIII CATG 5 cut(s) 124, 373, 561, 920, 1043
NlaIV GGNNCC 3 cut(s) 60, 422, 639
NmeAIII GCCGAG 1 cut(s) 478
NmuCI GTSAC 1 cut(s) 100
NruI TCGCGA 1 cut(s) 747
NsbI TGCGCA 1 cut(s) 951
NspI RCATGY 2 cut(s) 124, 373
PaeR7I CTCGAG 2 cut(s) 41, 53
PagI TCATGA 1 cut(s) 1039
PciI ACATGT 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 2 cut(s) 278, 484
PflMI CCANNNNNTGG 1 cut(s) 634
PkrI GCNGC 8 cut(s) 195, 331, 349, 451, 524, 564, 753, 849
PleI GAGTC 3 cut(s) 833, 913, 977
PpsI GAGTC 3 cut(s) 833, 913, 977
PpuMI RGGWCCY 3 cut(s) 58, 421, 599
PscI ACATGT 1 cut(s) 120
Psp1406I AACGTT 1 cut(s) 811
Psp5II RGGWCCY 3 cut(s) 58, 421, 599
Psp6I CCWGG 1 cut(s) 627
PspGI CCWGG 1 cut(s) 627
PspN4I GGNNCC 3 cut(s) 60, 422, 639
PspPI GGNCC 6 cut(s) 58, 421, 599, 637, 652, 761
PspPPI RGGWCCY 3 cut(s) 58, 421, 599
RruI TCGCGA 1 cut(s) 747
RsaI GTAC 1 cut(s) 929
RsaNI GTAC 1 cut(s) 928
RseI CAYNNNNRTG 2 cut(s) 86, 109
SaqAI TTAA 3 cut(s) 186, 390, 1053
SatI GCNGC 8 cut(s) 194, 330, 348, 450, 523, 563, 752, 848
Sau3AI GATC 1 cut(s) 690
Sau96I GGNCC 6 cut(s) 58, 421, 599, 637, 652, 761
SchI GAGTC 3 cut(s) 833, 914, 978
ScrFI CCNGG 1 cut(s) 629
SfaNI GCATC 3 cut(s) 410, 658, 687
Sfr274I CTCGAG 2 cut(s) 41, 53
SinI GGWCC 5 cut(s) 58, 421, 599, 637, 761
SlaI CTCGAG 2 cut(s) 41, 53
SmiMI CAYNNNNRTG 2 cut(s) 86, 109
SmlI CTYRAG 5 cut(s) 41, 53, 431, 719, 841
SmoI CTYRAG 5 cut(s) 41, 53, 431, 719, 841
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 4 cut(s) 285, 766, 830, 1035
SsiI CCGC 8 cut(s) 329, 347, 449, 462, 537, 562, 759, 957
SspI AATATT 1 cut(s) 22
SspMI CTAG 2 cut(s) 84, 606
StyD4I CCNGG 1 cut(s) 627
StyI CCWWGG 2 cut(s) 415, 641
TaaI ACNGT 4 cut(s) 49, 111, 266, 989
TaiI ACGT 4 cut(s) 131, 814, 933, 1031
TaqI TCGA 6 cut(s) 42, 54, 274, 726, 834, 933
TasI AATT 4 cut(s) 285, 766, 830, 1035
TauI GCSGC 4 cut(s) 332, 350, 452, 565
TfiI GAWTC 2 cut(s) 278, 484
Tru1I TTAA 3 cut(s) 186, 390, 1053
Tru9I TTAA 3 cut(s) 186, 390, 1053
TscAI CASTG 1 cut(s) 907
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 4 cut(s) 193, 522, 751, 847
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 4 cut(s) 149, 546, 703, 1028
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 1 cut(s) 907
Van91I CCANNNNNTGG 1 cut(s) 634
VpaK11BI GGWCC 5 cut(s) 58, 421, 599, 637, 761
XapI RAATTY 1 cut(s) 1035
XceI RCATGY 2 cut(s) 124, 373
XhoI CTCGAG 2 cut(s) 41, 53
XspI CTAG 2 cut(s) 84, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.