Rorug02G0103400

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012891
Physical Location & Seq
Forward (+)
8823885 .. 8828819
4935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0103400.1

Sequence Viewer

Length: 750 bp
ATGCATTGCGGTCCTGTTACCTCACAATGGAAACTGCTTTTGTCTTGCATGAGGGGATTTGTGAAAGCTTGTCTGTACCTGCGTATAGCTTCTGGTCTTCTAGTACTAGAAGCCAAGCTGTTTCTGCATTTGGAGGATTTGCTTTATGTGGTTAAAGCCAAACCCCATGATCACAGGATGATGTGTGACGCACCGATTGTGCAACCTAAGTTGAGCGAAAATGATTCTCTCTATAGTCATTTGCAGGTTAAAGATTTAACTGAGCAGTTTCCAGCCGCTACACGCCTTGCTTTGGTACTGAAACAGTTCTTGGCAGATCGTAGTCTGGATCAGTCTTATTCTGGTGGCTTGATTTCCTACTGTTTGGTACTACTAATTGTGCGTTTTCCCCAGCATGAGTGTCTTCTTGGCCAACCTATCAACCAAGACTTCGGAGACCTTCTGATGAATTTTCTTTATTTTTTTGGGAATGTTTTTGATCCTCGGAAAATGCGTATTTCCGTACAGGGAAATGGAGTTTATATAAAGAGGGAAAGAGGTTGCAGGTTTTGCACCGCTGGGCTTCCTAGTGATGTTGTTGAAGTTGGAGAAATGTCTTTCCATCTTCATAATGCTAAAACTTTCGAACTGGTAGCCAAGTTCTGCTATGGGGTGAAACTTGAACTGACTGCCTCAAATGTTGTATGCCTGCGATGTGCTGCTAAGCACCTTGAAAGGACTGCAGAGTATGAGGAAGGCAATTTATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

249

Amino Acids

28.18

Weight (kDa)

7.98

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66740
fragaria_vesca FvH4_1g13560
malus_domestica MD02G1150900.v1.1 MD15G1265400.v1.1
prunus_persica Prupe.7G152200_v2.0.a1
pyrus_communis pycom02g11850 pycom15g23110
rosa_chinensis RchiOBHm_Chr2g0101971
rosa_laevigata RLG00000017120
rosa_multiflora Rmu_co8388187.1_g000001
rosa_roxburghii Rroxscaffold_2G00140880
rosa_rugosa Rorug02G0103400 Rorug02G0103500
rosa_samantha Rh2AG151600 Rh2BG157000 Rh2CG157000 Rh2DG157100
rosa_wichuraiana Rw2G011830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 87, 235, 534
AciI CCGC 3 cut(s) 9, 276, 555
AclWI GGATC 2 cut(s) 336, 473
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 1 cut(s) 448
AfaI GTAC 5 cut(s) 77, 105, 297, 369, 504
AfiI CCNNNNNNNGG 2 cut(s) 27, 292
AgsI TTSAA 3 cut(s) 581, 662, 713
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AluBI AGCT 3 cut(s) 68, 89, 118
AluI AGCT 3 cut(s) 68, 89, 118
Alw26I GTCTC 1 cut(s) 429
AlwI GGATC 2 cut(s) 336, 473
AoxI GGCC 1 cut(s) 409
ApeKI GCWGC 1 cut(s) 698
ApoI RAATTY 1 cut(s) 448
Asp700I GAANNNNTTC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 664
AsuII TTCGAA 1 cut(s) 624
AvaII GGWCC 1 cut(s) 11
BalI TGGCCA 1 cut(s) 411
BbsI GAAGAC 2 cut(s) 89, 395
BbvI GCAGC 1 cut(s) 685
BccI CCATC 1 cut(s) 609
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 4 cut(s) 101, 107, 567, 748
BfmI CTRYAG 2 cut(s) 232, 720
BfuAI ACCTGC 3 cut(s) 87, 235, 534
BisI GCNGC 2 cut(s) 276, 699
BlpI GCTNAGC 1 cut(s) 702
BlsI GCNGC 2 cut(s) 277, 700
BmcAI AGTACT 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BpiI GAAGAC 2 cut(s) 89, 395
Bpu1102I GCTNAGC 1 cut(s) 702
Bpu14I TTCGAA 1 cut(s) 624
BsaI GGTCTC 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 482
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 292
Bse1I ACTGG 1 cut(s) 633
Bse3DI GCAATG 1 cut(s) 4
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 27, 292
BseMI GCAATG 1 cut(s) 4
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 633
BseXI GCAGC 1 cut(s) 685
BseYI CCCAGC 2 cut(s) 390, 557
BshFI GGCC 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 27, 292
BsmAI GTCTC 1 cut(s) 429
BsnI GGCC 1 cut(s) 411
Bso31I GGTCTC 1 cut(s) 429
Bsp119I TTCGAA 1 cut(s) 624
Bsp143I GATC 4 cut(s) 169, 316, 328, 478
Bsp1720I GCTNAGC 1 cut(s) 702
BspACI CCGC 3 cut(s) 9, 276, 555
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 1 cut(s) 253
BspMAI CTGCAG 1 cut(s) 724
BspMI ACCTGC 3 cut(s) 87, 235, 534
BspPI GGATC 2 cut(s) 336, 473
BspT104I TTCGAA 1 cut(s) 624
BspTNI GGTCTC 1 cut(s) 429
BsrDI GCAATG 1 cut(s) 4
BsrI ACTGG 1 cut(s) 633
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 4 cut(s) 169, 316, 328, 478
Bst4CI ACNGT 2 cut(s) 306, 362
BstAPI GCANNNNNTGC 1 cut(s) 549
BstBI TTCGAA 1 cut(s) 624
BstC8I GCNNGC 1 cut(s) 689
BstDEI CTNAG 3 cut(s) 207, 261, 702
BstF5I GGATG 1 cut(s) 183
BstKTI GATC 4 cut(s) 172, 319, 331, 481
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 4 cut(s) 169, 316, 328, 478
BstMWI GCNNNNNNNGC 2 cut(s) 124, 549
BstSFI CTRYAG 2 cut(s) 232, 720
BstV1I GCAGC 1 cut(s) 685
BstV2I GAAGAC 2 cut(s) 89, 395
BsuRI GGCC 1 cut(s) 411
BtgZI GCGATG 1 cut(s) 706
BtsCI GGATG 1 cut(s) 183
BveI ACCTGC 3 cut(s) 87, 235, 534
Cac8I GCNNGC 1 cut(s) 689
Cfr13I GGNCC 1 cut(s) 11
CseI GACGC 1 cut(s) 197
Csp6I GTAC 5 cut(s) 76, 104, 296, 368, 503
CviAII CATG 3 cut(s) 49, 167, 395
CviQI GTAC 5 cut(s) 76, 104, 296, 368, 503
DdeI CTNAG 3 cut(s) 207, 261, 702
DpnI GATC 4 cut(s) 171, 318, 330, 480
DpnII GATC 4 cut(s) 169, 316, 328, 478
EaeI YGGCCR 1 cut(s) 409
Eco31I GGTCTC 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 11
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 52, 170, 398
FatI CATG 3 cut(s) 48, 166, 394
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 2 cut(s) 276, 699
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 2 cut(s) 276, 699
FspBI CTAG 4 cut(s) 101, 107, 567, 748
GluI GCNGC 2 cut(s) 276, 699
GsaI CCCAGC 2 cut(s) 394, 561
HaeIII GGCC 1 cut(s) 411
HgaI GACGC 1 cut(s) 197
Hin1II CATG 3 cut(s) 52, 170, 398
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 1 cut(s) 224
HphI GGTGA 1 cut(s) 664
Hpy188I TCNGA 3 cut(s) 434, 444, 486
Hpy188III TCNNGA 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 449, 728
HpyCH4III ACNGT 2 cut(s) 306, 362
HpyCH4V TGCA 8 cut(s) 4, 48, 127, 202, 244, 543, 552, 722
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 549
HpyF3I CTNAG 3 cut(s) 207, 261, 702
Hsp92II CATG 3 cut(s) 52, 170, 398
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 4 cut(s) 169, 316, 328, 478
Lsp1109I GCAGC 1 cut(s) 685
MaeI CTAG 4 cut(s) 101, 107, 567, 748
MaeIII GTNAC 2 cut(s) 16, 185
MalI GATC 4 cut(s) 171, 318, 330, 480
MboI GATC 4 cut(s) 169, 316, 328, 478
MboII GAAGA 3 cut(s) 89, 395, 596
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 3 cut(s) 375, 448, 739
MluNI TGGCCA 1 cut(s) 411
MmeI TCCRAC 1 cut(s) 565
MnlI CCTC 8 cut(s) 31, 45, 127, 492, 522, 530, 682, 724
Mox20I TGGCCA 1 cut(s) 411
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 305
MscI TGGCCA 1 cut(s) 411
MseI TTAA 3 cut(s) 153, 249, 257
Msp20I TGGCCA 1 cut(s) 411
MspA1I CMGCKG 1 cut(s) 557
MwoI GCNNNNNNNGC 2 cut(s) 124, 549
NdeII GATC 4 cut(s) 169, 316, 328, 478
NlaIII CATG 3 cut(s) 52, 170, 398
NmuCI GTSAC 1 cut(s) 185
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 624
PcsI WCGNNNNNNNCGW 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 277, 700
PspFI CCCAGC 2 cut(s) 390, 557
PspPI GGNCC 1 cut(s) 11
PstI CTGCAG 1 cut(s) 724
RsaI GTAC 5 cut(s) 77, 105, 297, 369, 504
RsaNI GTAC 5 cut(s) 76, 104, 296, 368, 503
SaqAI TTAA 3 cut(s) 153, 249, 257
SatI GCNGC 2 cut(s) 276, 699
Sau3AI GATC 4 cut(s) 169, 316, 328, 478
Sau96I GGNCC 1 cut(s) 11
ScaI AGTACT 1 cut(s) 105
SfcI CTRYAG 2 cut(s) 232, 720
SfuI TTCGAA 1 cut(s) 624
SinI GGWCC 1 cut(s) 11
Sse9I AATT 3 cut(s) 375, 448, 739
SsiI CCGC 3 cut(s) 9, 276, 555
SspMI CTAG 4 cut(s) 101, 107, 567, 748
TaaI ACNGT 2 cut(s) 306, 362
TaqI TCGA 1 cut(s) 624
TasI AATT 3 cut(s) 375, 448, 739
TatI WGTACW 1 cut(s) 103
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 3 cut(s) 153, 249, 257
Tru9I TTAA 3 cut(s) 153, 249, 257
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 1 cut(s) 698
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 461, 596
TspGWI ACGGA 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 1 cut(s) 448
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 4 cut(s) 101, 107, 567, 748
ZrmI AGTACT 1 cut(s) 105
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.