Rh2AG151600

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012891
Physical Location & Seq
Forward (+)
13808894 .. 13811684
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG151600.1

Sequence Viewer

Length: 1155 bp
ATGAGGAAGCTTTGTCCGAATATTGATAGAGACGATGGCCTCGAGACTGTTCTCGAGGTCCCCATACCGGAAGAGATGTTCACTAGTATGGGAAGCAATGTCACATTACGGTGGCAAAACATGTTGACGTGGATGAAGGCTCAAACCTCTGACAAATGGTCTGCGCCGGTCATTGCCGGACGCTTTAATGAGCTGCGTTTCTTGCTTTACCTTGTAGGCTCTCCTCTTATCCCTCTTCAAGTTCAGTTGGGTCATTCCGTCCACCGTCCAGTTCGAGATTCTTCAATTGTAAGGATATCCATGAATCCATATCATTTTGTGCAAGCTTCAACGGCCAAATATATTGTGCAACAATACACAGCGGCGACGGGAGGGCAAGCGGCATTGAACTCAGTAACCAGCATGTGTGTTACTGGGCAGGTTAAGATTAGTGCATCGGATTTTCACCAAGGGGACCTGAGCCTTGAGGTGAAAAAGAGCGCGGCCGAGAGTGGCGGATTCTTACTTTGGCAAAAGAATCCAGACTTGTGGTGCTTAGAGCTTATTGTGTCTGGCTGCAAGGTCATCTGCGGAAGCAATGGCAAGCTTTCATGGCGGCATTCCTCTAACCAACAAACACCCATCTCACAAGGTCCTCCTAGACCCTTGCGCCGTTTTCTCCAGGGTTTGGACCCAAGGGCTACGGCCCTTCTATTCGCAGATGCAATGTGCATCGGCGAGAAGATCATCAACAACGACGATTGCTTCATACTCAAGCTCGAAACAAGTCCAGCCATTCGCGAGCAGCAAAGCGGTCCAAACTACGAGATAATCCACCACACAATCTGGGGATACTTCAGCCAACGTTCTGGTCTCCTTATACAATTCGAGGACTCAAGGCTGCTTAGGATGACCAACAAAGGAGACGATACAGATGTGTTCTGGGAGACCAGCACTGAGTCTGTTATACATGACTATAAGTACGTCGATGGACTGAACATTGCGCACAGCGGAAGAACACGAGTCAAGGTTTTCAGATACGGTGAGCAATCTGCAAACCACAAAAGGGAGATGGAAGAAACGTGGAAAATTCATGAGGTGGATTTTAACATTTGGGGTTTGACAATGGAGTGCTTTCTGCCTCCTGCTGATATAGATAATAAGAAGCAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

384

Amino Acids

43.51

Weight (kDa)

6.43

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 135 - 375 2.9e-114 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66740
fragaria_vesca FvH4_1g13560
malus_domestica MD02G1150900.v1.1 MD15G1265400.v1.1
prunus_persica Prupe.7G152200_v2.0.a1
pyrus_communis pycom02g11850 pycom15g23110
rosa_chinensis RchiOBHm_Chr2g0101971
rosa_laevigata RLG00000017120
rosa_multiflora Rmu_co8388187.1_g000001
rosa_roxburghii Rroxscaffold_2G00140880
rosa_rugosa Rorug02G0103400 Rorug02G0103500
rosa_samantha Rh2AG151600 Rh2BG157000 Rh2CG157000 Rh2DG157100
rosa_wichuraiana Rw2G011830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 984
Acc36I ACCTGC 1 cut(s) 409
AccB7I CCANNNNNTGG 1 cut(s) 667
AccII CGCG 2 cut(s) 482, 780
AciI CCGC 8 cut(s) 362, 380, 482, 495, 570, 595, 792, 990
AclI AACGTT 1 cut(s) 844
AcoI YGGCCR 2 cut(s) 333, 483
AcsI RAATTY 1 cut(s) 1068
AcuI CTGAAG 1 cut(s) 820
AfaI GTAC 1 cut(s) 962
AfiI CCNNNNNNNGG 3 cut(s) 67, 667, 1045
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 4 cut(s) 239, 285, 330, 388
AhdI GACNNNNNGTC 1 cut(s) 157
AhlI ACTAGT 1 cut(s) 83
AjiI CACGTC 1 cut(s) 129
AjnI CCWGG 1 cut(s) 660
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
AluBI AGCT 6 cut(s) 10, 193, 326, 541, 586, 757
AluI AGCT 6 cut(s) 10, 193, 326, 541, 586, 757
Alw26I GTCTC 5 cut(s) 24, 38, 857, 897, 920
Ama87I CYCGRG 2 cut(s) 41, 53
AoxI GGCC 4 cut(s) 37, 333, 483, 684
ApeKI GCWGC 4 cut(s) 193, 555, 784, 880
ApoI RAATTY 1 cut(s) 1068
AspLEI GCGC 4 cut(s) 166, 482, 651, 985
AspS9I GGNCC 6 cut(s) 58, 454, 632, 670, 685, 794
AsuHPI GGTGA 3 cut(s) 437, 481, 1034
AvaI CYCGRG 2 cut(s) 41, 53
AvaII GGWCC 5 cut(s) 58, 454, 632, 670, 794
BaeI ACNNNNGTAYC 2 cut(s) 900, 933
BauI CACGAG 1 cut(s) 999
BbvI GCAGC 4 cut(s) 180, 542, 796, 867
BccI CCATC 4 cut(s) 29, 629, 962, 1045
BceAI ACGGC 3 cut(s) 348, 636, 699
BciT130I CCWGG 1 cut(s) 662
BciVI GTATCC 1 cut(s) 824
BcoDI GTCTC 5 cut(s) 24, 38, 857, 897, 920
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 2 cut(s) 84, 639
BfuAI ACCTGC 1 cut(s) 409
BfuI GTATCC 1 cut(s) 824
BisI GCNGC 8 cut(s) 194, 363, 381, 483, 556, 596, 785, 881
BlsI GCNGC 8 cut(s) 195, 364, 382, 484, 557, 597, 786, 882
Bme1390I CCNGG 1 cut(s) 662
Bme18I GGWCC 5 cut(s) 58, 454, 632, 670, 794
BmeRI GACNNNNNGTC 1 cut(s) 157
BmeT110I CYCGRG 2 cut(s) 41, 53
BmgBI CACGTC 1 cut(s) 129
BmgT120I GGNCC 6 cut(s) 58, 454, 632, 670, 685, 794
BmiI GGNNCC 3 cut(s) 60, 455, 672
BmrFI CCNGG 1 cut(s) 662
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 3 cut(s) 443, 691, 720
BmuI ACTGGG 1 cut(s) 423
BpmI CTGGAG 1 cut(s) 644
Bpu10I CCTNAGC 2 cut(s) 458, 884
BpuEI CTTGAG 3 cut(s) 485, 737, 859
BsaI GGTCTC 2 cut(s) 857, 920
BsaJI CCNNGG 3 cut(s) 448, 661, 674
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 667, 1045
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 2 cut(s) 269, 418
Bse3DI GCAATG 5 cut(s) 103, 171, 583, 711, 978
BseBI CCWGG 1 cut(s) 662
BseDI CCNNGG 3 cut(s) 448, 661, 674
BseGI GGATG 2 cut(s) 138, 894
BseLI CCNNNNNNNGG 3 cut(s) 67, 667, 1045
BseMI GCAATG 5 cut(s) 103, 171, 583, 711, 978
BseMII CTCAG 3 cut(s) 405, 449, 927
BseNI ACTGG 2 cut(s) 269, 418
BseRI GAGGAG 1 cut(s) 213
BseX3I CGGCCG 1 cut(s) 483
BseXI GCAGC 4 cut(s) 180, 542, 796, 867
Bsh1236I CGCG 2 cut(s) 482, 780
Bsh1285I CGRYCG 1 cut(s) 486
BshFI GGCC 4 cut(s) 39, 335, 485, 686
BsiEI CGRYCG 1 cut(s) 486
BsiHKCI CYCGRG 2 cut(s) 41, 53
BsiSI CCGG 3 cut(s) 68, 167, 177
BslFI GGGAC 2 cut(s) 44, 467
BslI CCNNNNNNNGG 3 cut(s) 67, 667, 1045
BsmAI GTCTC 5 cut(s) 24, 38, 857, 897, 920
BsmBI CGTCTC 2 cut(s) 24, 897
BsmFI GGGAC 2 cut(s) 44, 467
BsmI GAATGC 1 cut(s) 598
BsnI GGCC 4 cut(s) 39, 335, 485, 686
Bso31I GGTCTC 2 cut(s) 857, 920
BsoBI CYCGRG 2 cut(s) 41, 53
Bsp143I GATC 1 cut(s) 723
Bsp68I TCGCGA 1 cut(s) 780
BspACI CCGC 8 cut(s) 362, 380, 482, 495, 570, 595, 792, 990
BspANI GGCC 4 cut(s) 39, 335, 485, 686
BspCNI CTCAG 3 cut(s) 404, 450, 928
BspFNI CGCG 2 cut(s) 482, 780
BspHI TCATGA 1 cut(s) 1072
BspLI GGNNCC 3 cut(s) 60, 455, 672
BspMI ACCTGC 1 cut(s) 409
BspTNI GGTCTC 2 cut(s) 857, 920
BsrDI GCAATG 5 cut(s) 103, 171, 583, 711, 978
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 2 cut(s) 269, 418
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 3 cut(s) 448, 661, 674
BssMI GATC 1 cut(s) 723
BssSI CACGAG 1 cut(s) 999
BssT1I CCWWGG 2 cut(s) 448, 674
Bst2BI CACGAG 1 cut(s) 999
Bst2UI CCWGG 1 cut(s) 662
Bst4CI ACNGT 4 cut(s) 49, 111, 266, 1022
Bst6I CTCTTC 2 cut(s) 66, 240
BstC8I GCNNGC 4 cut(s) 324, 378, 584, 782
BstDEI CTNAG 5 cut(s) 391, 458, 535, 884, 936
BstF5I GGATG 2 cut(s) 138, 894
BstFNI CGCG 2 cut(s) 482, 780
BstHHI GCGC 4 cut(s) 166, 482, 651, 985
BstKTI GATC 1 cut(s) 726
BstMAI GTCTC 5 cut(s) 24, 38, 857, 897, 920
BstMBI GATC 1 cut(s) 723
BstMCI CGRYCG 1 cut(s) 486
BstMWI GCNNNNNNNGC 3 cut(s) 202, 332, 592
BstNI CCWGG 1 cut(s) 662
BstNSI RCATGY 2 cut(s) 124, 406
BstSCI CCNGG 1 cut(s) 660
BstUI CGCG 2 cut(s) 482, 780
BstV1I GCAGC 4 cut(s) 180, 542, 796, 867
BstXI CCANNNNNNTGG 2 cut(s) 528, 848
BstZI CGGCCG 1 cut(s) 483
BsuI GTATCC 1 cut(s) 824
BsuRI GGCC 4 cut(s) 39, 335, 485, 686
BtrI CACGTC 1 cut(s) 129
BtsCI GGATG 2 cut(s) 138, 894
BtsIMutI CAGTG 1 cut(s) 933
BtuMI TCGCGA 1 cut(s) 780
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 4 cut(s) 324, 378, 584, 782
CciI TCATGA 1 cut(s) 1072
CfoI GCGC 4 cut(s) 166, 482, 651, 985
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 6 cut(s) 58, 454, 632, 670, 685, 794
CseI GACGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 961
CviAII CATG 6 cut(s) 121, 301, 403, 591, 950, 1073
CviQI GTAC 1 cut(s) 961
DdeI CTNAG 5 cut(s) 391, 458, 535, 884, 936
DpnI GATC 1 cut(s) 725
DpnII GATC 1 cut(s) 723
DriI GACNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 2 cut(s) 333, 483
EagI CGGCCG 1 cut(s) 483
Eam1104I CTCTTC 2 cut(s) 66, 240
Eam1105I GACNNNNNGTC 1 cut(s) 157
EarI CTCTTC 2 cut(s) 66, 240
EciI GGCGGA 1 cut(s) 510
EclXI CGGCCG 1 cut(s) 483
Eco130I CCWWGG 2 cut(s) 448, 674
Eco31I GGTCTC 2 cut(s) 857, 920
Eco32I GATATC 1 cut(s) 297
Eco47I GGWCC 5 cut(s) 58, 454, 632, 670, 794
Eco52I CGGCCG 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 820
Eco88I CYCGRG 2 cut(s) 41, 53
EcoO109I RGGNCCY 3 cut(s) 58, 454, 632
EcoRII CCWGG 1 cut(s) 660
EcoRV GATATC 1 cut(s) 297
EcoT14I CCWWGG 2 cut(s) 448, 674
ErhI CCWWGG 2 cut(s) 448, 674
Esp3I CGTCTC 2 cut(s) 24, 897
FaeI CATG 6 cut(s) 124, 304, 406, 594, 953, 1076
FaqI GGGAC 2 cut(s) 44, 467
FatI CATG 6 cut(s) 120, 300, 402, 590, 949, 1072
Fnu4HI GCNGC 8 cut(s) 194, 363, 381, 483, 556, 596, 785, 881
FokI GGATG 2 cut(s) 145, 901
Fsp4HI GCNGC 8 cut(s) 194, 363, 381, 483, 556, 596, 785, 881
FspBI CTAG 2 cut(s) 84, 639
FspI TGCGCA 1 cut(s) 984
GlaI GCGC 4 cut(s) 165, 481, 650, 984
GluI GCNGC 8 cut(s) 194, 363, 381, 483, 556, 596, 785, 881
GsuI CTGGAG 1 cut(s) 644
HaeIII GGCC 4 cut(s) 39, 335, 485, 686
HapII CCGG 3 cut(s) 68, 167, 177
HgaI GACGC 1 cut(s) 189
HhaI GCGC 4 cut(s) 166, 482, 651, 985
Hin1II CATG 6 cut(s) 124, 304, 406, 594, 953, 1076
Hin6I GCGC 4 cut(s) 164, 480, 649, 983
HinP1I GCGC 4 cut(s) 164, 480, 649, 983
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HindIII AAGCTT 3 cut(s) 8, 324, 584
HinfI GANTC 7 cut(s) 278, 304, 498, 517, 872, 938, 1002
HpaII CCGG 3 cut(s) 68, 167, 177
HphI GGTGA 3 cut(s) 437, 481, 1034
Hpy166II GTNNAC 3 cut(s) 81, 126, 262
Hpy188I TCNGA 4 cut(s) 18, 151, 439, 1016
Hpy188III TCNNGA 6 cut(s) 43, 53, 275, 521, 779, 1073
Hpy8I GTNNAC 3 cut(s) 81, 126, 262
Hpy99I CGWCG 3 cut(s) 370, 740, 968
HpyAV CCTTC 2 cut(s) 130, 698
HpyCH4III ACNGT 4 cut(s) 49, 111, 266, 1022
HpyCH4IV ACGT 4 cut(s) 128, 844, 963, 1061
HpyCH4V TGCA 7 cut(s) 322, 349, 434, 558, 704, 711, 1034
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 332, 592
HpyF3I CTNAG 5 cut(s) 391, 458, 535, 884, 936
HpySE526I ACGT 4 cut(s) 128, 844, 963, 1061
Hsp92II CATG 6 cut(s) 124, 304, 406, 594, 953, 1076
HspAI GCGC 4 cut(s) 164, 480, 649, 983
Kzo9I GATC 1 cut(s) 723
Lsp1109I GCAGC 4 cut(s) 180, 542, 796, 867
LweI GCATC 3 cut(s) 443, 691, 720
MaeI CTAG 2 cut(s) 84, 639
MaeII ACGT 4 cut(s) 128, 844, 963, 1061
MaeIII GTNAC 3 cut(s) 100, 394, 409
MalI GATC 1 cut(s) 725
MboI GATC 1 cut(s) 723
MboII GAAGA 6 cut(s) 83, 227, 273, 733, 1005, 1067
MfeI CAATTG 1 cut(s) 285
MluCI AATT 3 cut(s) 285, 863, 1068
MlyI GAGTC 3 cut(s) 866, 947, 1011
MseI TTAA 3 cut(s) 186, 423, 1086
MslI CAYNNNNRTG 2 cut(s) 86, 109
MspA1I CMGCKG 2 cut(s) 362, 990
MspI CCGG 3 cut(s) 68, 167, 177
MspR9I CCNGG 1 cut(s) 662
MunI CAATTG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 598
MvaI CCWGG 1 cut(s) 662
MvnI CGCG 2 cut(s) 482, 780
MwoI GCNNNNNNNGC 3 cut(s) 202, 332, 592
NdeII GATC 1 cut(s) 723
NlaIII CATG 6 cut(s) 124, 304, 406, 594, 953, 1076
NlaIV GGNNCC 3 cut(s) 60, 455, 672
NmeAIII GCCGAG 1 cut(s) 511
NmuCI GTSAC 1 cut(s) 100
NruI TCGCGA 1 cut(s) 780
NsbI TGCGCA 1 cut(s) 984
NspI RCATGY 2 cut(s) 124, 406
PaeR7I CTCGAG 2 cut(s) 41, 53
PagI TCATGA 1 cut(s) 1072
PciI ACATGT 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PctI GAATGC 1 cut(s) 598
PfeI GAWTC 4 cut(s) 278, 304, 498, 517
PflMI CCANNNNNTGG 1 cut(s) 667
PkrI GCNGC 8 cut(s) 195, 364, 382, 484, 557, 597, 786, 882
PleI GAGTC 3 cut(s) 866, 946, 1010
PpsI GAGTC 3 cut(s) 866, 946, 1010
PpuMI RGGWCCY 3 cut(s) 58, 454, 632
PscI ACATGT 1 cut(s) 120
Psp1406I AACGTT 1 cut(s) 844
Psp5II RGGWCCY 3 cut(s) 58, 454, 632
Psp6I CCWGG 1 cut(s) 660
PspGI CCWGG 1 cut(s) 660
PspN4I GGNNCC 3 cut(s) 60, 455, 672
PspPI GGNCC 6 cut(s) 58, 454, 632, 670, 685, 794
PspPPI RGGWCCY 3 cut(s) 58, 454, 632
RruI TCGCGA 1 cut(s) 780
RsaI GTAC 1 cut(s) 962
RsaNI GTAC 1 cut(s) 961
RseI CAYNNNNRTG 2 cut(s) 86, 109
SaqAI TTAA 3 cut(s) 186, 423, 1086
SatI GCNGC 8 cut(s) 194, 363, 381, 483, 556, 596, 785, 881
Sau3AI GATC 1 cut(s) 723
Sau96I GGNCC 6 cut(s) 58, 454, 632, 670, 685, 794
SchI GAGTC 3 cut(s) 866, 947, 1011
ScrFI CCNGG 1 cut(s) 662
SfaNI GCATC 3 cut(s) 443, 691, 720
Sfr274I CTCGAG 2 cut(s) 41, 53
SinI GGWCC 5 cut(s) 58, 454, 632, 670, 794
SlaI CTCGAG 2 cut(s) 41, 53
SmiMI CAYNNNNRTG 2 cut(s) 86, 109
SmlI CTYRAG 5 cut(s) 41, 53, 464, 752, 874
SmoI CTYRAG 5 cut(s) 41, 53, 464, 752, 874
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 3 cut(s) 285, 863, 1068
SsiI CCGC 8 cut(s) 362, 380, 482, 495, 570, 595, 792, 990
SspI AATATT 1 cut(s) 22
SspMI CTAG 2 cut(s) 84, 639
StyD4I CCNGG 1 cut(s) 660
StyI CCWWGG 2 cut(s) 448, 674
TaaI ACNGT 4 cut(s) 49, 111, 266, 1022
TaiI ACGT 4 cut(s) 131, 847, 966, 1064
TaqI TCGA 6 cut(s) 42, 54, 274, 759, 867, 966
TasI AATT 3 cut(s) 285, 863, 1068
TauI GCSGC 4 cut(s) 365, 383, 485, 598
TfiI GAWTC 4 cut(s) 278, 304, 498, 517
Tru1I TTAA 3 cut(s) 186, 423, 1086
Tru9I TTAA 3 cut(s) 186, 423, 1086
TscAI CASTG 1 cut(s) 940
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 4 cut(s) 193, 555, 784, 880
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 5 cut(s) 149, 317, 579, 736, 1061
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 1 cut(s) 940
Van91I CCANNNNNTGG 1 cut(s) 667
VpaK11BI GGWCC 5 cut(s) 58, 454, 632, 670, 794
XapI RAATTY 1 cut(s) 1068
XceI RCATGY 2 cut(s) 124, 406
XhoI CTCGAG 2 cut(s) 41, 53
XspI CTAG 2 cut(s) 84, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.