pycom15g28050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015522
Physical Location & Seq
Forward (+)
23723669 .. 23724385
717 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 717 bp
ATGCCCATTATTTTTTTCTTTTTACATTTCGATCCTCAACAAATTAAGCAGTTTCCAATTCCTTTTATTGTTTCTCAAGTTCTGATCAGTCCGACATCGATGGCTGGGCGGATATCTAATAACACAAAGTTGAATCCTAAAGCAGCTGATGGGAATGAAATGTTTCTGGGTCTAACTGCTGTTTCTCACAAGACTGTTGGCTTACACCTCATACAGAACTGCGATCTTCCTCCGCCGGCAAAACTATTTACGGGTTTGGATCAAACTGTTGTGTCATCCATGAAAAGGATTTGCAGCGTGAACTCAGATCGCGATGATGATCACAGGAACGACCAGTTTGACATGGATGGAAACCGAATTGACGGAGAGAATGAGAAGCTGGAGCTTCTGAAGGCGCTGAGGCTGTCGCAAACGAGAGCAAGGGAGGCGGAGAAGAAGGCTGAGAAGTTGGGGAACGAAAAAGACTGTCTCGCTAATGCGTTGCTTGCGGAGGCTAAAGAGTTGTTTGCTTACAGGCAATGGGTGATGTTGCTTGAGCTTCAAGTTTCAAAGTTGCAGTCGCATTGGGCGGAGCAAGGGAGTGATCAGGCGAGTTGTAGTTGTGGCAGATCAAAAGGAGGTGACGGTGGGGATGGCATCACTTGGGTTGTAGCTTTGGCACTTTGTTTTGGCATCGCCGGCGTGGGCTTCGCATTCGGTTGCAGATACTTGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.31

Weight (kDa)

6.21

Isoelectric Point (pI)

29.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015522)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20210
malus_domestica MD01G1036700.v1.1 MD15G1317900.v1.1
prunus_persica Prupe.6G193900_v2.0.a1
pyrus_communis pycom15g28050
rosa_chinensis RchiOBHm_Chr2g0112271
rosa_laevigata RLG00000017967
rosa_multiflora Rmu_sc0004467.1_g000025 Rmu_sc0011951.1_g000003
rosa_roxburghii Rroxscaffold_2G00131570
rosa_rugosa Rorug02G0179800
rosa_samantha Rh2AG232300 Rh2BG245600 Rh2CG236500 Rh2DG240000
rosa_wichuraiana Rw2G018010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 312
AciI CCGC 5 cut(s) 109, 233, 428, 488, 569
AclWI GGATC 2 cut(s) 26, 267
AcuI CTGAAG 1 cut(s) 410
AfaI GTAC 1 cut(s) 713
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 3 cut(s) 133, 542, 549
AluBI AGCT 5 cut(s) 146, 379, 385, 538, 653
AluI AGCT 5 cut(s) 146, 379, 385, 538, 653
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 2 cut(s) 26, 267
ApeKI GCWGC 2 cut(s) 143, 294
ArsI GACNNNNNNTTYG 2 cut(s) 542, 574
Asp700I GAANNNNTTC 1 cut(s) 162
AspLEI GCGC 1 cut(s) 397
AsuHPI GGTGA 2 cut(s) 535, 632
BbvCI CCTCAGC 1 cut(s) 398
BbvI GCAGC 2 cut(s) 155, 306
BccI CCATC 4 cut(s) 94, 143, 341, 626
BclI TGATCA 3 cut(s) 84, 319, 583
BcoDI GTCTC 1 cut(s) 473
BfoI RGCGCY 1 cut(s) 398
BisI GCNGC 2 cut(s) 144, 295
BlsI GCNGC 2 cut(s) 145, 296
BmsI GCATC 2 cut(s) 645, 681
BpmI CTGGAG 1 cut(s) 401
Bpu10I CCTNAGC 1 cut(s) 398
BpuEI CTTGAG 2 cut(s) 60, 554
Bsa29I ATCGAT 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 318
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse118I RCCGGY 2 cut(s) 235, 677
Bse1I ACTGG 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 524
Bse8I GATNNNNATC 1 cut(s) 318
BseCI ATCGAT 1 cut(s) 98
BseGI GGATG 3 cut(s) 275, 352, 637
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 524
BseMII CTCAG 3 cut(s) 318, 389, 432
BseNI ACTGG 1 cut(s) 334
BseXI GCAGC 2 cut(s) 155, 306
BseYI CCCAGC 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 312
BshVI ATCGAT 1 cut(s) 98
BsiSI CCGG 2 cut(s) 236, 678
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 473
BsmI GAATGC 1 cut(s) 692
Bsp143I GATC 8 cut(s) 31, 84, 223, 259, 307, 319, 583, 608
Bsp68I TCGCGA 1 cut(s) 312
BspACI CCGC 5 cut(s) 109, 233, 428, 488, 569
BspCNI CTCAG 3 cut(s) 317, 390, 433
BspDI ATCGAT 1 cut(s) 98
BspFNI CGCG 1 cut(s) 312
BspPI GGATC 2 cut(s) 26, 267
BsrDI GCAATG 1 cut(s) 524
BsrFI RCCGGY 2 cut(s) 235, 677
BsrI ACTGG 1 cut(s) 334
BssAI RCCGGY 2 cut(s) 235, 677
BssMI GATC 8 cut(s) 31, 84, 223, 259, 307, 319, 583, 608
Bst4CI ACNGT 4 cut(s) 196, 268, 467, 626
BstC8I GCNNGC 3 cut(s) 237, 486, 679
BstDEI CTNAG 3 cut(s) 304, 398, 441
BstF5I GGATG 3 cut(s) 275, 352, 637
BstFNI CGCG 1 cut(s) 312
BstH2I RGCGCY 1 cut(s) 398
BstHHI GCGC 1 cut(s) 397
BstKTI GATC 8 cut(s) 34, 87, 226, 262, 310, 322, 586, 611
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 8 cut(s) 31, 84, 223, 259, 307, 319, 583, 608
BstMWI GCNNNNNNNGC 3 cut(s) 425, 485, 678
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 155, 306
Bsu15I ATCGAT 1 cut(s) 98
BsuTUI ATCGAT 1 cut(s) 98
BtgZI GCGATG 2 cut(s) 327, 658
BtsCI GGATG 3 cut(s) 275, 352, 637
BtuMI TCGCGA 1 cut(s) 312
Cac8I GCNNGC 3 cut(s) 237, 486, 679
CfoI GCGC 1 cut(s) 397
Cfr10I RCCGGY 2 cut(s) 235, 677
ClaI ATCGAT 1 cut(s) 98
Csp6I GTAC 1 cut(s) 712
CviAII CATG 2 cut(s) 280, 343
CviQI GTAC 1 cut(s) 712
DdeI CTNAG 3 cut(s) 304, 398, 441
DpnI GATC 8 cut(s) 33, 86, 225, 261, 309, 321, 585, 610
DpnII GATC 8 cut(s) 31, 84, 223, 259, 307, 319, 583, 608
EciI GGCGGA 4 cut(s) 124, 222, 443, 584
Eco32I GATATC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 410
EcoRV GATATC 1 cut(s) 114
FaeI CATG 2 cut(s) 283, 346
FaiI YATR 3 cut(s) 212, 281, 344
FatI CATG 2 cut(s) 279, 342
FbaI TGATCA 3 cut(s) 84, 319, 583
Fnu4HI GCNGC 2 cut(s) 144, 295
FokI GGATG 3 cut(s) 262, 359, 644
Fsp4HI GCNGC 2 cut(s) 144, 295
GlaI GCGC 1 cut(s) 396
GluI GCNGC 2 cut(s) 144, 295
GsaI CCCAGC 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 401
HaeII RGCGCY 1 cut(s) 398
HapII CCGG 2 cut(s) 236, 678
HhaI GCGC 1 cut(s) 397
Hin1II CATG 2 cut(s) 283, 346
Hin6I GCGC 1 cut(s) 395
HinP1I GCGC 1 cut(s) 395
HinfI GANTC 1 cut(s) 133
HpaII CCGG 2 cut(s) 236, 678
HphI GGTGA 2 cut(s) 535, 632
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 4 cut(s) 84, 93, 307, 390
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 2 cut(s) 385, 430
HpyCH4III ACNGT 4 cut(s) 196, 268, 467, 626
HpyCH4V TGCA 3 cut(s) 294, 556, 702
HpyF10VI GCNNNNNNNGC 3 cut(s) 425, 485, 678
HpyF3I CTNAG 3 cut(s) 304, 398, 441
Hsp92II CATG 2 cut(s) 283, 346
HspAI GCGC 1 cut(s) 395
KroI GCCGGC 2 cut(s) 235, 677
KroNI GCCGGC 2 cut(s) 237, 679
Ksp22I TGATCA 3 cut(s) 84, 319, 583
Kzo9I GATC 8 cut(s) 31, 84, 223, 259, 307, 319, 583, 608
LmnI GCTCC 2 cut(s) 382, 571
LpnPI CCDG 9 cut(s) 90, 152, 249, 310, 347, 365, 499, 572, 691
Lsp1109I GCAGC 2 cut(s) 155, 306
LweI GCATC 2 cut(s) 645, 681
MaeIII GTNAC 1 cut(s) 620
MalI GATC 8 cut(s) 33, 86, 225, 261, 309, 321, 585, 610
MboI GATC 8 cut(s) 31, 84, 223, 259, 307, 319, 583, 608
MboII GAAGA 2 cut(s) 218, 445
MluCI AATT 3 cut(s) 42, 57, 357
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 7 cut(s) 45, 218, 240, 393, 418, 484, 611
MreI CGCCGGCG 1 cut(s) 677
MroNI GCCGGC 2 cut(s) 235, 677
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 2 cut(s) 236, 678
Mva1269I GAATGC 1 cut(s) 692
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 3 cut(s) 425, 485, 678
NaeI GCCGGC 2 cut(s) 237, 679
NdeII GATC 8 cut(s) 31, 84, 223, 259, 307, 319, 583, 608
NgoMIV GCCGGC 2 cut(s) 235, 677
NlaIII CATG 2 cut(s) 283, 346
NmuCI GTSAC 1 cut(s) 620
NruI TCGCGA 1 cut(s) 312
PctI GAATGC 1 cut(s) 692
PdiI GCCGGC 2 cut(s) 237, 679
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 145, 296
PspFI CCCAGC 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 146
RruI TCGCGA 1 cut(s) 312
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 2 cut(s) 144, 295
Sau3AI GATC 8 cut(s) 31, 84, 223, 259, 307, 319, 583, 608
SetI ASST 7 cut(s) 148, 210, 381, 387, 540, 622, 655
SfaNI GCATC 2 cut(s) 645, 681
SgrAI CRCCGGYG 1 cut(s) 677
SmlI CTYRAG 2 cut(s) 75, 533
SmoI CTYRAG 2 cut(s) 75, 533
Sse9I AATT 3 cut(s) 42, 57, 357
SsiI CCGC 5 cut(s) 109, 233, 428, 488, 569
TaaI ACNGT 4 cut(s) 196, 268, 467, 626
TaqI TCGA 2 cut(s) 30, 98
TasI AATT 3 cut(s) 42, 57, 357
TatI WGTACW 1 cut(s) 711
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 2 cut(s) 143, 294
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 2 cut(s) 171, 296
TspGWI ACGGA 1 cut(s) 378
XmnI GAANNNNTTC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.