pycom15g28940

UDP-galactose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0009931
Physical Location & Seq
Reverse (-)
25431429 .. 25434880
3452 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 702 bp
ATGGCTTCAGCAGGCAAAGCTGATCGGAAGGCTTCTCTTGATGCCGCGTCATGGTTGTTCAATGTCGTCACATCTGTTGGTATAATCATTGTCAATAAATCGTTGATGGCTACGCACGGTTTCAGTTTCGCAACAACATTAACGGGTCTGCATTTTGCCACAACAACCTTACTGACCGTTGTTCTTAAATGGCTGGGATATATCCAGCCCTCTCAACTACCGTTACCTGATCTATTGAAATTTGTTTTATTTGCGAATTTCTCCATAGTCGGAATGAATGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGATCGCAAAGCTGACTATGATCCCAGTATCATGTTTTCTTGAAGTTGTCTTGGACAATGTGCGTTACTCAAGGGGCACAAAGCTGAGCATAACATTGGTTCTCCTGGGTGTTGCAGTTTGTACTGTTACTGATGTCAGTGTCAATGCCAAGGGCTTTATAGCTGCTTTAGTAGCAGTTTGGAGCACTGCCCTTCAACAGCATTATGTACACTCTCTTCAACGGAAGTATTCTCTTGGGTCTTTCAACTTATTGGGACATACTGCACCGGTACAGGCTGCATCTTTGCTGATATTAGGCCCCTTCTTGGACTACTGGTTGACAAATAAAACAGTTTACGCATACGACTATCATTTGATATCCACAGCTCTAATCGTGTGGTTGTGTTAG

Protein Analysis

234

Amino Acids

25.48

Weight (kDa)

9.28

Isoelectric Point (pI)

25.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 23 - 206 1e-09 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39390 AT4G39390 AT4G39390
fragaria_vesca FvH4_1g23140
malus_domestica MD01G1014300.v1.1 MD15G1336400.v1.1
prunus_persica Prupe.6G168000_v2.0.a1 Prupe.6G168000_v2.0.a1
pyrus_communis pycom01g04620 pycom15g28940
rosa_chinensis RchiOBHm_Chr2g0117861
rosa_laevigata RLG00000018380
rosa_multiflora Rmu_sc0011918.1_g000001
rosa_roxburghii Rroxscaffold_2G00126160
rosa_rugosa Rorug02G0214600
rosa_samantha Rh2AG270800 Rh2BG282300 Rh2CG268800 Rh2DG278600 Rh2DG296500
rosa_wichuraiana Rw2G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 47
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 2 cut(s) 239, 256
AfaI GTAC 3 cut(s) 436, 522, 585
AfiI CCNNNNNNNGG 2 cut(s) 51, 619
AgeI ACCGGT 1 cut(s) 580
AgsI TTSAA 6 cut(s) 61, 238, 356, 509, 533, 559
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 5 cut(s) 20, 325, 397, 476, 680
AluI AGCT 5 cut(s) 20, 325, 397, 476, 680
Alw21I GWGCWC 1 cut(s) 500
AlwI GGATC 1 cut(s) 328
AoxI GGCC 1 cut(s) 610
ApeKI GCWGC 2 cut(s) 476, 590
ApoI RAATTY 2 cut(s) 239, 256
AsiGI ACCGGT 1 cut(s) 580
AspS9I GGNCC 1 cut(s) 611
BaeGI GKGCMC 1 cut(s) 392
BarI GAAGNNNNNNTAC 2 cut(s) 513, 545
Bbv12I GWGCWC 1 cut(s) 500
BbvI GCAGC 2 cut(s) 463, 577
BccI CCATC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 419
BisI GCNGC 3 cut(s) 45, 477, 591
BlpI GCTNAGC 1 cut(s) 398
BlsI GCNGC 3 cut(s) 46, 478, 592
Bme1390I CCNGG 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 611
BmiI GGNNCC 1 cut(s) 613
BmrFI CCNGG 1 cut(s) 419
BmrI ACTGGG 1 cut(s) 332
BmsI GCATC 2 cut(s) 31, 602
BmuI ACTGGG 1 cut(s) 332
Bpu1102I GCTNAGC 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 418, 462
BsaWI WCCGGW 1 cut(s) 580
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 619
Bse118I RCCGGY 1 cut(s) 580
Bse1I ACTGG 2 cut(s) 338, 632
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 2 cut(s) 418, 462
BseLI CCNNNNNNNGG 2 cut(s) 51, 619
BseMII CTCAG 1 cut(s) 389
BseNI ACTGG 2 cut(s) 338, 632
BseSI GKGCMC 1 cut(s) 392
BseXI GCAGC 2 cut(s) 463, 577
BseYI CCCAGC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 561
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 1 cut(s) 612
BshTI ACCGGT 1 cut(s) 580
BsiHKAI GWGCWC 1 cut(s) 500
BsiSI CCGG 1 cut(s) 581
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 2 cut(s) 51, 619
BsmFI GGGAC 1 cut(s) 582
BsnI GGCC 1 cut(s) 612
Bsp1286I GDGCHC 2 cut(s) 392, 500
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 4 cut(s) 22, 229, 315, 333
Bsp1720I GCTNAGC 1 cut(s) 398
BspACI CCGC 1 cut(s) 45
BspANI GGCC 1 cut(s) 612
BspCNI CTCAG 1 cut(s) 390
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 613
BspPI GGATC 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 580
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 2 cut(s) 338, 632
BssAI RCCGGY 1 cut(s) 580
BssECI CCNNGG 2 cut(s) 418, 462
BssMI GATC 4 cut(s) 22, 229, 315, 333
BssT1I CCWWGG 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 5 cut(s) 119, 178, 222, 439, 646
Bst6I CTCTTC 1 cut(s) 534
BstAUI TGTACA 1 cut(s) 520
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 398
BstFNI CGCG 1 cut(s) 47
BstKTI GATC 4 cut(s) 25, 232, 318, 336
BstMBI GATC 4 cut(s) 22, 229, 315, 333
BstMWI GCNNNNNNNGC 2 cut(s) 17, 485
BstNI CCWGG 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 417
BstSLI GKGCMC 1 cut(s) 392
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 2 cut(s) 463, 577
BsuRI GGCC 1 cut(s) 612
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 2 cut(s) 457, 498
Cac8I GCNNGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 580
Cfr13I GGNCC 1 cut(s) 611
CseI GACGC 1 cut(s) 36
Csp6I GTAC 3 cut(s) 435, 521, 584
CspAI ACCGGT 1 cut(s) 580
CviAII CATG 2 cut(s) 51, 345
CviQI GTAC 3 cut(s) 435, 521, 584
DdeI CTNAG 1 cut(s) 398
DpnI GATC 4 cut(s) 24, 231, 317, 335
DpnII GATC 4 cut(s) 22, 229, 315, 333
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 462
Eco32I GATATC 1 cut(s) 672
EcoO109I RGGNCCY 1 cut(s) 611
EcoRII CCWGG 1 cut(s) 417
EcoRV GATATC 1 cut(s) 672
EcoT14I CCWWGG 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 2 cut(s) 54, 348
FaqI GGGAC 1 cut(s) 582
FatI CATG 2 cut(s) 50, 344
Fnu4HI GCNGC 3 cut(s) 45, 477, 591
Fsp4HI GCNGC 3 cut(s) 45, 477, 591
GluI GCNGC 3 cut(s) 45, 477, 591
GsaI CCCAGC 1 cut(s) 197
HaeIII GGCC 1 cut(s) 612
HapII CCGG 1 cut(s) 581
HgaI GACGC 1 cut(s) 36
Hin1II CATG 2 cut(s) 54, 348
HincII GTYRAC 1 cut(s) 633
HindII GTYRAC 1 cut(s) 633
HinfI GANTC 1 cut(s) 306
HpaII CCGG 1 cut(s) 581
Hpy166II GTNNAC 3 cut(s) 523, 633, 649
Hpy188I TCNGA 3 cut(s) 27, 272, 315
Hpy188III TCNNGA 2 cut(s) 38, 353
Hpy8I GTNNAC 3 cut(s) 523, 633, 649
HpyAV CCTTC 3 cut(s) 22, 515, 625
HpyCH4III ACNGT 5 cut(s) 119, 178, 222, 439, 646
HpyCH4V TGCA 4 cut(s) 151, 428, 578, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 485
HpyF3I CTNAG 1 cut(s) 398
Hsp92II CATG 2 cut(s) 54, 348
Kzo9I GATC 4 cut(s) 22, 229, 315, 333
LmnI GCTCC 1 cut(s) 495
LpnPI CCDG 9 cut(s) 179, 218, 240, 351, 404, 431, 572, 594, 613
Lsp1109I GCAGC 2 cut(s) 463, 577
LweI GCATC 2 cut(s) 31, 602
MaeIII GTNAC 4 cut(s) 67, 222, 377, 439
MalI GATC 4 cut(s) 24, 231, 317, 335
MboI GATC 4 cut(s) 22, 229, 315, 333
MboII GAAGA 1 cut(s) 521
MhlI GDGCHC 2 cut(s) 392, 500
MluCI AATT 2 cut(s) 239, 256
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 1 cut(s) 220
MseI TTAA 3 cut(s) 140, 186, 287
MspI CCGG 1 cut(s) 581
MspR9I CCNGG 1 cut(s) 419
MvaI CCWGG 1 cut(s) 419
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 17, 485
NdeII GATC 4 cut(s) 22, 229, 315, 333
NlaIII CATG 2 cut(s) 54, 348
NlaIV GGNNCC 1 cut(s) 613
NmuCI GTSAC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 306
PinAI ACCGGT 1 cut(s) 580
PkrI GCNGC 3 cut(s) 46, 478, 592
Psp6I CCWGG 1 cut(s) 417
PspFI CCCAGC 1 cut(s) 193
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 613
PspPI GGNCC 1 cut(s) 611
RsaI GTAC 3 cut(s) 436, 522, 585
RsaNI GTAC 3 cut(s) 435, 521, 584
SaqAI TTAA 3 cut(s) 140, 186, 287
SatI GCNGC 3 cut(s) 45, 477, 591
Sau3AI GATC 4 cut(s) 22, 229, 315, 333
Sau96I GGNCC 1 cut(s) 611
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 2 cut(s) 392, 500
SetI ASST 7 cut(s) 22, 170, 229, 327, 399, 478, 682
SfaNI GCATC 2 cut(s) 31, 602
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 2 cut(s) 239, 256
SsiI CCGC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 5 cut(s) 119, 178, 222, 439, 646
TasI AATT 2 cut(s) 239, 256
TatI WGTACW 2 cut(s) 434, 520
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 3 cut(s) 140, 186, 287
Tru9I TTAA 3 cut(s) 140, 186, 287
TscAI CASTG 2 cut(s) 457, 505
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 2 cut(s) 476, 590
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 290
TspGWI ACGGA 1 cut(s) 550
TspRI CASTG 2 cut(s) 457, 505
XapI RAATTY 2 cut(s) 239, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.