Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006687

Physical Location & Seq

Genomic Coordinates Reverse (-)

26508160 .. 26513819

Gene Structure 5660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGGTAACAACAAGCGGTTCAAGAACCATAAGCCGCCTCACCGTGACCGTGGGCAATCTAGCCGGACCCATCACCATCTTCCACAGTCTGATGAATCCCTACCGTCTGATCAAGGTCTCCAATTTTGTTTCCATTCTTGCACACAAGCTACTGAAGAGGAGCCAAGTCCCAAAATCCAGCTTGCAATGTGGGATTTTGGCCAATGTGATGCAAAAAGATGCACGGGACGCAAGCTTTCAAGATTTGGCTTTTTGAAAGAATTGCGTGTCAATAATGGTTTTGGAGGCATTGTTTTGAGTCCAGTTGGGACGCTTTGTGTCTCAAGAGAAGATTATAGTTTAATCCAGCGAAAAGGATTGGCTGTTGTGGATTGCTCTTGGGCACGCTTGGATGATGTACCATTTGTGAAGCTGCGTTGCACTGCTCCTCGCCTCTTGCCTTGGCTTGTAGCAGCAAATCCAGTAAATTATGGTCGACCCTGTCAACTATCTTGTGTGGAGGCATTATCTGCGGCTTTGTTCATATGTGGGGAAGAAGAAACTGCAAATTTGTTGCTCGGAAAGTTCAAATGGGGTCATGCTTTCCTGTCCCTCAATAGGGAACTTCTGAAGGCATACTCCAAATGTGAAAATAGTGCTGAAATAATTTCAGTCCAAAATGATTGGCTTTCACAAACCAGTCAGGTTCCAAAGTCTCCTAGAGAAGTAAAAGGAGGAGCAGACCTGTCCTCTCTCGGTGAAGATGACGACTCTTGTGATTCCGACGATGGGCTTCCGCCACTGGAAAGGAATATGAATCACTTAGACATACAGGAAAGTGATGAAGAAAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RLI Ribo_biogen_C

Protein Analysis

279

Amino Acids

31.0

Weight (kDa)

5.66

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer4_RLI	PF04068	60 - 91	1.6e-13	Possible Fer4-like domain in RNase L inhibitor, RLI
Ribo_biogen_C	PF04034	97 - 223	9.5e-53	Ribosome biogenesis protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10070 AT5G10070
fragaria_vesca	FvH4_1g21690 FvH4_1g21690 FvH4_1g21690 FvH4_1g21690
malus_domestica	MD01G1023100.v1.1 MD15G1329600.v1.1
prunus_persica	Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1 Prupe.6G178600_v2.0.a1
pyrus_communis	pycom01g05130 pycom15g29590
rosa_chinensis	RchiOBHm_Chr2g0115571
rosa_laevigata	RLG00000018194
rosa_multiflora	Rmu_sc0021766.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128100 Rroxscaffold_2G00128980
rosa_rugosa	Rorug02G0198100 Rorug02G0198200
rosa_samantha	Rh2AG255600 Rh2BG266300 Rh2CG260800 Rh2DG263800
rosa_wichuraiana	Rw2G019990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	475
AciI	CCGC	4 cut(s)	16, 35, 512, 776
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	547
AcuI	CTGAAG	2 cut(s)	174, 629
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	3 cut(s)	597, 598, 768
AgsI	TTSAA	4 cut(s)	22, 240, 256, 568
AluBI	AGCT	4 cut(s)	149, 181, 235, 412
AluI	AGCT	4 cut(s)	149, 181, 235, 412
Alw26I	GTCTC	3 cut(s)	122, 325, 699
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	412, 452
ApoI	RAATTY	1 cut(s)	547
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	3 cut(s)	32, 65, 749
AvaII	GGWCC	1 cut(s)	66
BaeGI	GKGCMC	1 cut(s)	385
BalI	TGGCCA	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	399, 464
BccI	CCATC	3 cut(s)	78, 84, 761
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	3 cut(s)	122, 325, 699
BfaI	CTAG	2 cut(s)	60, 699
BisI	GCNGC	4 cut(s)	35, 413, 453, 513
BlsI	GCNGC	4 cut(s)	36, 414, 454, 514
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	3 cut(s)	68, 162, 687
BmsI	GCATC	2 cut(s)	199, 209
BpuEI	CTTGAG	1 cut(s)	307
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	49, 440
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	3 cut(s)	597, 598, 768
Bse1I	ACTGG	4 cut(s)	302, 461, 678, 786
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	49, 440
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	3 cut(s)	597, 598, 768
BseMI	GCAATG	1 cut(s)	192
BseNI	ACTGG	4 cut(s)	302, 461, 678, 786
BseRI	GAGGAG	3 cut(s)	173, 417, 729
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	2 cut(s)	399, 464
BshFI	GGCC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	4 cut(s)	153, 240, 322, 574
BslI	CCNNNNNNNGG	3 cut(s)	597, 598, 768
BsmAI	GTCTC	3 cut(s)	122, 325, 699
BsmFI	GGGAC	4 cut(s)	153, 240, 322, 574
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	4 cut(s)	16, 35, 512, 776
BspANI	GGCC	1 cut(s)	201
BspLI	GGNNCC	3 cut(s)	68, 162, 687
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	192
BsrI	ACTGG	4 cut(s)	302, 461, 678, 786
BssECI	CCNNGG	2 cut(s)	49, 440
BssMI	GATC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	440
Bst4CI	ACNGT	4 cut(s)	44, 50, 87, 105
Bst6I	CTCTTC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	3 cut(s)	183, 233, 385
BstDEI	CTNAG	1 cut(s)	802
BstDSI	CCRYGG	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	3 cut(s)	122, 325, 699
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 509
BstSLI	GKGCMC	1 cut(s)	385
BstV1I	GCAGC	2 cut(s)	399, 464
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	397
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	2 cut(s)	420, 779
Cac8I	GCNNGC	3 cut(s)	183, 233, 385
Cfr13I	GGNCC	1 cut(s)	66
CseI	GACGC	2 cut(s)	237, 319
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	1 cut(s)	578
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	1 cut(s)	802
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	765
Eco130I	CCWWGG	1 cut(s)	440
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	174, 629
EcoT14I	CCWWGG	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	1 cut(s)	581
FaiI	YATR	9 cut(s)	30, 336, 471, 524, 526, 579, 616, 794, 809
FaqI	GGGAC	4 cut(s)	153, 240, 322, 574
FatI	CATG	1 cut(s)	577
FauNDI	CATATG	1 cut(s)	524
FbaI	TGATCA	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	475
Fnu4HI	GCNGC	4 cut(s)	35, 413, 453, 513
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	4 cut(s)	35, 413, 453, 513
FspBI	CTAG	2 cut(s)	60, 699
GluI	GCNGC	4 cut(s)	35, 413, 453, 513
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	64
HgaI	GACGC	2 cut(s)	237, 319
Hin1II	CATG	1 cut(s)	581
HincII	GTYRAC	2 cut(s)	476, 485
HindII	GTYRAC	2 cut(s)	476, 485
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	5 cut(s)	95, 298, 749, 758, 796
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	3 cut(s)	32, 65, 749
Hpy166II	GTNNAC	2 cut(s)	476, 485
Hpy188I	TCNGA	5 cut(s)	91, 109, 560, 609, 763
Hpy188III	TCNNGA	3 cut(s)	22, 240, 324
Hpy8I	GTNNAC	2 cut(s)	476, 485
Hpy99I	CGWCG	1 cut(s)	767
HpyAV	CCTTC	1 cut(s)	604
HpyCH4III	ACNGT	4 cut(s)	44, 50, 87, 105
HpyCH4V	TGCA	6 cut(s)	141, 185, 212, 222, 420, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 509
HpyF3I	CTNAG	1 cut(s)	802
Hsp92II	CATG	1 cut(s)	581
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	3 cut(s)	160, 430, 716
Lsp1109I	GCAGC	2 cut(s)	399, 464
LweI	GCATC	2 cut(s)	199, 209
MaeI	CTAG	2 cut(s)	60, 699
MaeIII	GTNAC	2 cut(s)	5, 44
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	7 cut(s)	71, 167, 341, 545, 548, 752, 836
MhlI	GDGCHC	1 cut(s)	385
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	5 cut(s)	122, 260, 466, 547, 645
MluNI	TGGCCA	1 cut(s)	201
MlyI	GAGTC	2 cut(s)	307, 743
MmeI	TCCRAC	1 cut(s)	786
MnlI	CCTC	9 cut(s)	48, 151, 278, 438, 443, 493, 602, 707, 739
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	2 cut(s)	341, 835
Msp20I	TGGCCA	1 cut(s)	201
MspI	CCGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	228, 509
NdeI	CATATG	1 cut(s)	524
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	1 cut(s)	581
NlaIV	GGNNCC	3 cut(s)	68, 162, 687
NmuCI	GTSAC	1 cut(s)	44
PfeI	GAWTC	3 cut(s)	95, 758, 796
PflFI	GACNNNGTC	1 cut(s)	480
PkrI	GCNGC	4 cut(s)	36, 414, 454, 514
PleI	GAGTC	2 cut(s)	306, 743
PpsI	GAGTC	2 cut(s)	306, 743
PspN4I	GGNNCC	3 cut(s)	68, 162, 687
PspPI	GGNCC	1 cut(s)	66
PsyI	GACNNNGTC	1 cut(s)	480
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
SalI	GTCGAC	1 cut(s)	474
SaqAI	TTAA	2 cut(s)	341, 835
SatI	GCNGC	4 cut(s)	35, 413, 453, 513
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	2 cut(s)	307, 743
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	7 cut(s)	118, 151, 183, 237, 414, 687, 726
SfaNI	GCATC	2 cut(s)	199, 209
SinI	GGWCC	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	5 cut(s)	122, 260, 466, 547, 645
SsiI	CCGC	4 cut(s)	16, 35, 512, 776
SspMI	CTAG	2 cut(s)	60, 699
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	4 cut(s)	44, 50, 87, 105
TaqI	TCGA	1 cut(s)	475
TasI	AATT	5 cut(s)	122, 260, 466, 547, 645
TauI	GCSGC	2 cut(s)	37, 515
TfiI	GAWTC	3 cut(s)	95, 758, 796
Tru1I	TTAA	2 cut(s)	341, 835
Tru9I	TTAA	2 cut(s)	341, 835
TscAI	CASTG	2 cut(s)	427, 786
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	2 cut(s)	412, 452
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	4 cut(s)	108, 511, 809, 837
TspRI	CASTG	2 cut(s)	427, 786
Tth111I	GACNNNGTC	1 cut(s)	480
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	1 cut(s)	547
XmiI	GTMKAC	1 cut(s)	475
XspI	CTAG	2 cut(s)	60, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.