Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005160

Physical Location & Seq

Genomic Coordinates Forward (+)

27681487 .. 27683096

Gene Structure 1610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCACCGTGCTTGTCCATGCAATTCCATTTCCGCCAGTGCCTAGACTGAGACCCAAAAACGTGGCGGCACCTGCTCGGTGTTTGGTCTCGACCGCACATCAAAGCACGAGATTTGTTGGGTTATGGCGACACACTTGCACAGTGAGATCAGTAGCAGAAGAAAGTTCCAGCTCCAGCTTGGACGTTGGGGATGATGAGGTTATTAAGACACAGCTTCTGGAAGCAATCGAAGGAATCAATAGAGGCATTTTCGGAGTCCCGTCTGCGAAGAAATCTCAGATTGAAGCTCTCGTCAACCAGCTCGAGTCTCGGAATCCTACTCCAGATCCTCTTCTTAATCTACAAAAGGTGGGTGGATGCTGGAAACTTGTGTACAGCACAATTACCATTTTAGGTTCAAAACGAACAAAGCTGGGATTGAGGGACTTCATCTCCTTGGGTGATTTCTTCCAGAATATTAACATTGCTAAGGGTAAAGCAGTTAATGTGATCAAGTTCGACGTGAGAGGATTGAATCTGTTTAATGGACGGCTGACAATTGAGGCCTCCTTCAAGAAAGCATCCAATTCAAGAGTTGACATCAACTATGACAACTCCACGATCGCTCCGAGTCAGTTAATGAACTTGTTCCAAAAAAATTATGATATTCTGCTTGGGATCTTCAACCCAGAAGGATGGCTTGAGATCACATATGTTGATGACACCCTGAGAATAGGGAGGGATGATAAAGGCAACATCTTCATATTAGAGAGATCACATGAAAGTTCGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

259

Amino Acids

28.62

Weight (kDa)

9.13

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	69 - 250	1.7e-34	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09820 AT5G09820 AT5G09820
fragaria_vesca	FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570
malus_domestica	MD15G1343200.v1.1
prunus_persica	Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1
pyrus_communis	pycom15g30310
rosa_chinensis	RchiOBHm_Chr2g0119061 RchiOBHm_Chr2g0119121
rosa_laevigata	RLG00000018446
rosa_multiflora	Rmu_sc0001653.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124500
rosa_rugosa	Rorug02G0220300 Rorug02G0220400
rosa_samantha	Rh2AG278400 Rh2BG289300
rosa_wichuraiana	Rw2G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	70
AciI	CCGC	3 cut(s)	35, 68, 96
AclWI	GGATC	2 cut(s)	323, 668
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	377
AgsI	TTSAA	6 cut(s)	287, 402, 517, 556, 573, 667
AjiI	CACGTC	1 cut(s)	505
AluBI	AGCT	6 cut(s)	174, 180, 217, 290, 304, 415
AluI	AGCT	6 cut(s)	174, 180, 217, 290, 304, 415
Alw26I	GTCTC	3 cut(s)	46, 94, 315
AlwI	GGATC	2 cut(s)	323, 668
AlwNI	CAGNNNCTG	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	2 cut(s)	3, 546
Asp700I	GAANNNNTTC	1 cut(s)	629
AsuHPI	GGTGA	1 cut(s)	455
AvaI	CYCGRG	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	70
BauI	CACGAG	1 cut(s)	109
BccI	CCATC	1 cut(s)	672
BceAI	ACGGC	1 cut(s)	548
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BclI	TGATCA	1 cut(s)	492
BcoDI	GTCTC	3 cut(s)	46, 94, 315
BfaI	CTAG	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	305
BmgBI	CACGTC	1 cut(s)	505
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	2 cut(s)	350, 572
BpmI	CTGGAG	2 cut(s)	160, 309
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	704
BsaI	GGTCTC	2 cut(s)	46, 94
BsaJI	CCNNGG	1 cut(s)	438
BsaXI	ACNNNNNCTCC	4 cut(s)	419, 449, 592, 622
Bse1I	ACTGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	5 cut(s)	199, 365, 563, 683, 730
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	3 cut(s)	41, 293, 701
BseNI	ACTGG	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	415
Bsh1285I	CGRYCG	2 cut(s)	96, 606
BshFI	GGCC	2 cut(s)	5, 548
BshNI	GGYRCC	1 cut(s)	70
BsiEI	CGRYCG	2 cut(s)	96, 606
BsiHKCI	CYCGRG	1 cut(s)	305
BslFI	GGGAC	2 cut(s)	245, 440
BsmAI	GTCTC	3 cut(s)	46, 94, 315
BsmFI	GGGAC	2 cut(s)	245, 440
BsnI	GGCC	2 cut(s)	5, 548
Bso31I	GGTCTC	2 cut(s)	46, 94
BsoBI	CYCGRG	1 cut(s)	305
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	7 cut(s)	149, 328, 492, 603, 660, 687, 755
BspACI	CCGC	3 cut(s)	35, 68, 96
BspANI	GGCC	2 cut(s)	5, 548
BspCNI	CTCAG	3 cut(s)	42, 292, 702
BspLI	GGNNCC	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	82
BspPI	GGATC	2 cut(s)	323, 668
BspT107I	GGYRCC	1 cut(s)	70
BspTNI	GGTCTC	2 cut(s)	46, 94
BsrDI	GCAATG	1 cut(s)	465
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	7 cut(s)	149, 328, 492, 603, 660, 687, 755
BssSI	CACGAG	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	438
Bst2BI	CACGAG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	10, 145
Bst6I	CTCTTC	1 cut(s)	339
BstAUI	TGTACA	1 cut(s)	375
BstDEI	CTNAG	4 cut(s)	50, 279, 471, 710
BstF5I	GGATG	5 cut(s)	199, 365, 563, 683, 730
BstKTI	GATC	7 cut(s)	152, 331, 495, 606, 663, 690, 758
BstMAI	GTCTC	3 cut(s)	46, 94, 315
BstMBI	GATC	7 cut(s)	149, 328, 492, 603, 660, 687, 755
BstMCI	CGRYCG	2 cut(s)	96, 606
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstX2I	RGATCY	2 cut(s)	328, 660
BstXI	CCANNNNNNTGG	2 cut(s)	64, 678
BstYI	RGATCY	2 cut(s)	328, 660
BsuRI	GGCC	2 cut(s)	5, 548
BtrI	CACGTC	1 cut(s)	505
BtsCI	GGATG	5 cut(s)	199, 365, 563, 683, 730
BtsIMutI	CAGTG	2 cut(s)	45, 150
BveI	ACCTGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	376
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	2 cut(s)	20, 761
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	4 cut(s)	50, 279, 471, 710
DpnI	GATC	7 cut(s)	151, 330, 494, 605, 662, 689, 757
DpnII	GATC	7 cut(s)	149, 328, 492, 603, 660, 687, 755
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	438
Eco147I	AGGCCT	1 cut(s)	548
Eco31I	GGTCTC	2 cut(s)	46, 94
Eco88I	CYCGRG	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	2 cut(s)	23, 764
FaiI	YATR	8 cut(s)	21, 127, 591, 645, 694, 696, 746, 762
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FaqI	GGGAC	2 cut(s)	245, 440
FatI	CATG	2 cut(s)	19, 760
FauNDI	CATATG	1 cut(s)	694
FbaI	TGATCA	1 cut(s)	492
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	5 cut(s)	206, 372, 550, 690, 737
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	69
GsaI	CCCAGC	1 cut(s)	419
GsuI	CTGGAG	2 cut(s)	160, 309
HaeIII	GGCC	2 cut(s)	5, 548
Hin1II	CATG	2 cut(s)	23, 764
HincII	GTYRAC	2 cut(s)	298, 580
HindII	GTYRAC	2 cut(s)	298, 580
HinfI	GANTC	6 cut(s)	237, 258, 308, 316, 517, 613
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	3 cut(s)	298, 376, 580
Hpy188I	TCNGA	4 cut(s)	257, 282, 315, 612
Hpy188III	TCNNGA	6 cut(s)	91, 221, 326, 454, 556, 573
Hpy8I	GTNNAC	3 cut(s)	298, 376, 580
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	3 cut(s)	227, 562, 668
HpyCH4III	ACNGT	2 cut(s)	10, 145
HpyCH4IV	ACGT	3 cut(s)	63, 186, 504
HpyCH4V	TGCA	2 cut(s)	23, 141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	4 cut(s)	50, 279, 471, 710
HpySE526I	ACGT	3 cut(s)	63, 186, 504
Hsp92II	CATG	2 cut(s)	23, 764
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	7 cut(s)	149, 328, 492, 603, 660, 687, 755
LmnI	GCTCC	2 cut(s)	179, 613
LweI	GCATC	2 cut(s)	350, 572
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	3 cut(s)	63, 186, 504
MalI	GATC	7 cut(s)	151, 330, 494, 605, 662, 689, 757
MboI	GATC	7 cut(s)	149, 328, 492, 603, 660, 687, 755
MboII	GAAGA	6 cut(s)	173, 283, 326, 442, 655, 733
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	2 cut(s)	328, 660
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	24, 384, 540, 568, 640
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	267, 317, 622
MnlI	CCTC	8 cut(s)	193, 239, 342, 417, 503, 538, 559, 714
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	629
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	7 cut(s)	207, 339, 462, 486, 525, 620, 775
Msp20I	TGGCCA	1 cut(s)	5
MunI	CAATTG	1 cut(s)	540
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	7 cut(s)	149, 328, 492, 603, 660, 687, 755
NlaIII	CATG	2 cut(s)	23, 764
NlaIV	GGNNCC	1 cut(s)	72
PaeR7I	CTCGAG	1 cut(s)	305
PaqCI	CACCTGC	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	608
PdmI	GAANNNNTTC	1 cut(s)	629
PfeI	GAWTC	3 cut(s)	237, 316, 517
PkrI	GCNGC	1 cut(s)	70
Ple19I	CGATCG	1 cut(s)	606
PleI	GAGTC	3 cut(s)	266, 316, 621
PpsI	GAGTC	3 cut(s)	266, 316, 621
PspFI	CCCAGC	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	72
PspXI	VCTCGAGB	1 cut(s)	305
PstNI	CAGNNNCTG	1 cut(s)	220
PsuI	RGATCY	2 cut(s)	328, 660
PvuI	CGATCG	1 cut(s)	606
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SaqAI	TTAA	7 cut(s)	207, 339, 462, 486, 525, 620, 775
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	7 cut(s)	149, 328, 492, 603, 660, 687, 755
SchI	GAGTC	3 cut(s)	267, 317, 622
SfaNI	GCATC	2 cut(s)	350, 572
Sfr274I	CTCGAG	1 cut(s)	305
SlaI	CTCGAG	1 cut(s)	305
SmlI	CTYRAG	2 cut(s)	305, 683
SmoI	CTYRAG	2 cut(s)	305, 683
Sse9I	AATT	5 cut(s)	24, 384, 540, 568, 640
SseBI	AGGCCT	1 cut(s)	548
SsiI	CCGC	3 cut(s)	35, 68, 96
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	548
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	2 cut(s)	10, 145
TaiI	ACGT	3 cut(s)	66, 189, 507
TaqI	TCGA	4 cut(s)	92, 231, 306, 501
TasI	AATT	5 cut(s)	24, 384, 540, 568, 640
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	3 cut(s)	237, 316, 517
Tru1I	TTAA	7 cut(s)	207, 339, 462, 486, 525, 620, 775
Tru9I	TTAA	7 cut(s)	207, 339, 462, 486, 525, 620, 775
TscAI	CASTG	2 cut(s)	45, 150
TspDTI	ATGAA	4 cut(s)	421, 638, 733, 777
TspRI	CASTG	2 cut(s)	45, 150
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XhoI	CTCGAG	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	629
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.