Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003331

Physical Location & Seq

Genomic Coordinates Reverse (-)

29059838 .. 29062070

Gene Structure 2233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCTCCTTGTACTGGTTGTACCAAGCCCCGTGAGCATCTTTATAAACCCAGCAACAATCTTCTGGGATGTGGACACCCTCTTTGTGTTGCATTCAACTCAAGCTACCCATGCAAAACCCCAGATGATCAATCCGACTATGAGGTCGAATATGCTCGATCACGGGTCATCTCTTGGTGTGCTGGTCAATGACTACTTCCCCCTGAAATTCACCAATGGCTCTCGACTCAGTCCTCGTTTGGCCTTTGGGTGTGGATATGATCAAAAACTTAATGGTTTAAACACACCTGCCACCTCAGGAGTCATTGGCCTAGCTAATGGAAAGGCCAGCATTGTTTCACAACTAAGTCGCCTAGGTTTAACGCGAAATGTTGTGGGTCACTGTCTAAGTGGGCAAGGCGGAGGATTTCTTTTCTTTGGGGATGATCTTGTCCCTTCTTCTGGAGTCATGTGGACACCAATGTTGCAGAATTCATTCCAAGAGCACTACTCATCTGGACCAGCGGAACTTGTCTTTAATGGAAAGTCTACCGGTGTAAAGGGCCTTAACATGGTTTTTGATAGTGGAAGCTCTTACACTTATTTCAATTCACAAGCTTACAAGGCACTCATTAATCTGGTGCGAAATGATTTAAATGGGAAGCCTCTGAAGGATGCAACTAAGGATCAATCCCTCCCAATTTGCTGGAAAGGTAGCAAACCTTTCAAATCTGTTGGCGACGCAAAGAGCTTTTTCAAGCCCTTAGCACTGAGCTTTACTAAAGCTAAGACTGTTCAGCTGCAGTTATCGCCCGAAGCTTATCTTATAGTTACAAAACATGGCAATGTATGCTTGGGGATTTTGAATGGCACTGAAGTGGGACTGGGAAATATGAACATCATTGGAGATATTACTATGCAAGATAAAATGGTGATATATGACAACGAGAACCAGAGAATTGGATGGGCTCCTACAAATTGCAAAAGACTTCCAAAAGTGGATCGTGAACTTTGTGACGGTATTTCTCAGCCTTTTGTTGCCAATTTGGGTATCCTGGAACAGCATTGTCCTGCTTATGATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

355

Amino Acids

38.46

Weight (kDa)

8.74

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	50 - 141	8.8e-21	Xylanase inhibitor N-terminal
Asp	PF00026	120 - 317	2.4e-09	Eukaryotic aspartyl protease
TAXi_C	PF14541	182 - 316	8.5e-19	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44130 AT1G77480 AT1G77480
fragaria_vesca	FvH4_2g27390 FvH4_2g27390 FvH4_2g27390
malus_domestica	MD15G1345400.v1.1
prunus_persica	Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.7G031200_v2.0.a1
pyrus_communis	pycom15g30990
rosa_chinensis	RchiOBHm_Chr6g0296231
rosa_laevigata	RLG00000011715
rosa_roxburghii	Rroxscaffold_7G00171720 Rroxscaffold_7G00178340
rosa_rugosa	Rorug06G0259700.1 Rorug06G0259800.1
rosa_samantha	Rh6AG371900 Rh6BG379800 Rh6CG385200 Rh6DG372400
rosa_wichuraiana	Rw6G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AarI	CACCTGC	1 cut(s)	295
AasI	GACNNNNNNGTC	1 cut(s)	142
Acc36I	ACCTGC	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	527
AccII	CGCG	1 cut(s)	364
AciI	CCGC	2 cut(s)	399, 503
AclWI	GGATC	2 cut(s)	672, 987
AcsI	RAATTY	2 cut(s)	206, 469
AcuI	CTGAAG	2 cut(s)	668, 873
AfaI	GTAC	2 cut(s)	12, 21
AfiI	CCNNNNNNNGG	3 cut(s)	13, 440, 550
AgeI	ACCGGT	1 cut(s)	530
AgsI	TTSAA	5 cut(s)	96, 586, 706, 736, 844
AjnI	CCWGG	1 cut(s)	1032
AleI	CACNNNNGTG	1 cut(s)	854
AluBI	AGCT	9 cut(s)	104, 314, 570, 596, 729, 753, 764, 778, 797
AluI	AGCT	9 cut(s)	104, 314, 570, 596, 729, 753, 764, 778, 797
Alw21I	GWGCWC	1 cut(s)	486
AlwI	GGATC	2 cut(s)	672, 987
AoxI	GGCC	4 cut(s)	240, 307, 324, 541
ApeKI	GCWGC	1 cut(s)	778
ApoI	RAATTY	2 cut(s)	206, 469
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AseI	ATTAAT	1 cut(s)	612
AsiGI	ACCGGT	1 cut(s)	530
Asp700I	GAANNNNTTC	1 cut(s)	473
AspA2I	CCTAGG	1 cut(s)	352
AspS9I	GGNCC	2 cut(s)	497, 541
AsuHPI	GGTGA	2 cut(s)	202, 922
AvaII	GGWCC	1 cut(s)	497
AvrII	CCTAGG	1 cut(s)	352
AxyI	CCTNAGG	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	949
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	765
BccI	CCATC	1 cut(s)	936
BciT130I	CCWGG	1 cut(s)	1034
BciVI	GTATCC	1 cut(s)	1040
BclI	TGATCA	3 cut(s)	126, 259, 1057
BfaI	CTAG	2 cut(s)	311, 353
BfmI	CTRYAG	1 cut(s)	779
BfuAI	ACCTGC	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	1040
BisI	GCNGC	1 cut(s)	779
BlnI	CCTAGG	1 cut(s)	352
BlsI	GCNGC	1 cut(s)	780
Bme1390I	CCNGG	1 cut(s)	1034
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	2 cut(s)	497, 541
BmiI	GGNNCC	1 cut(s)	948
BmrFI	CCNGG	1 cut(s)	1034
BmrI	ACTGGG	1 cut(s)	872
BmsI	GCATC	2 cut(s)	45, 643
BmuI	ACTGGG	1 cut(s)	872
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpmI	CTGGAG	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	742
BpuEI	CTTGAG	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	352
BsaWI	WCCGGW	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 440, 550
Bse118I	RCCGGY	1 cut(s)	530
Bse1I	ACTGG	2 cut(s)	18, 867
Bse21I	CCTNAGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	829
BseBI	CCWGG	1 cut(s)	1034
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	4 cut(s)	73, 427, 658, 947
BseLI	CCNNNNNNNGG	3 cut(s)	13, 440, 550
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	4 cut(s)	241, 309, 740, 1019
BseNI	ACTGG	2 cut(s)	18, 867
BseXI	GCAGC	1 cut(s)	765
BseYI	CCCAGC	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	364
BshFI	GGCC	4 cut(s)	242, 309, 326, 543
BshTI	ACCGGT	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	531
BslFI	GGGAC	2 cut(s)	416, 873
BslI	CCNNNNNNNGG	3 cut(s)	13, 440, 550
BsmFI	GGGAC	2 cut(s)	416, 873
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	4 cut(s)	242, 309, 326, 543
Bsp1286I	GDGCHC	2 cut(s)	486, 949
Bsp143I	GATC	7 cut(s)	126, 157, 259, 424, 664, 979, 1057
BspACI	CCGC	2 cut(s)	399, 503
BspANI	GGCC	4 cut(s)	242, 309, 326, 543
BspCNI	CTCAG	4 cut(s)	240, 308, 741, 1018
BspFNI	CGCG	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	948
BspMAI	CTGCAG	1 cut(s)	783
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	672, 987
BsrDI	GCAATG	1 cut(s)	829
BsrFI	RCCGGY	1 cut(s)	530
BsrI	ACTGG	2 cut(s)	18, 867
BssAI	RCCGGY	1 cut(s)	530
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	7 cut(s)	126, 157, 259, 424, 664, 979, 1057
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	1034
Bst4CI	ACNGT	3 cut(s)	383, 772, 998
BstAPI	GCANNNNNTGC	1 cut(s)	828
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	9 cut(s)	227, 295, 344, 386, 660, 742, 749, 765, 1005
BstF5I	GGATG	4 cut(s)	73, 427, 658, 947
BstFNI	CGCG	1 cut(s)	364
BstKTI	GATC	7 cut(s)	129, 160, 262, 427, 667, 982, 1060
BstMBI	GATC	7 cut(s)	126, 157, 259, 424, 664, 979, 1057
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 110, 602, 787, 828
BstNI	CCWGG	1 cut(s)	1034
BstSCI	CCNGG	1 cut(s)	1032
BstSFI	CTRYAG	1 cut(s)	779
BstUI	CGCG	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	765
BstXI	CCANNNNNNTGG	2 cut(s)	684, 938
Bsu36I	CCTNAGG	1 cut(s)	295
BsuI	GTATCC	1 cut(s)	1040
BsuRI	GGCC	4 cut(s)	242, 309, 326, 543
BtsCI	GGATG	4 cut(s)	73, 427, 658, 947
BtsIMutI	CAGTG	3 cut(s)	379, 746, 849
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	2 cut(s)	497, 541
CseI	GACGC	1 cut(s)	728
Csp6I	GTAC	2 cut(s)	11, 20
CspAI	ACCGGT	1 cut(s)	530
CviAII	CATG	4 cut(s)	110, 448, 550, 818
CviQI	GTAC	2 cut(s)	11, 20
DdeI	CTNAG	9 cut(s)	227, 295, 344, 386, 660, 742, 749, 765, 1005
DpnI	GATC	7 cut(s)	128, 159, 261, 426, 666, 981, 1059
DpnII	GATC	7 cut(s)	126, 157, 259, 424, 664, 979, 1057
DraI	TTTAAA	2 cut(s)	279, 633
DrdI	GACNNNNNNGTC	1 cut(s)	142
DseDI	GACNNNNNNGTC	1 cut(s)	142
EciI	GGCGGA	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	949
Eco47I	GGWCC	1 cut(s)	497
Eco57I	CTGAAG	2 cut(s)	668, 873
Eco81I	CCTNAGG	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	541
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	1032
EcoT14I	CCWWGG	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	949
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	4 cut(s)	113, 451, 553, 821
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FaqI	GGGAC	2 cut(s)	416, 873
FatI	CATG	4 cut(s)	109, 447, 549, 817
FbaI	TGATCA	3 cut(s)	126, 259, 1057
FblI	GTMKAC	1 cut(s)	527
Fnu4HI	GCNGC	1 cut(s)	779
FokI	GGATG	4 cut(s)	80, 434, 665, 954
FriOI	GRGCYC	1 cut(s)	949
Fsp4HI	GCNGC	1 cut(s)	779
FspBI	CTAG	2 cut(s)	311, 353
GluI	GCNGC	1 cut(s)	779
GsaI	CCCAGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	4 cut(s)	242, 309, 326, 543
HapII	CCGG	1 cut(s)	531
HgaI	GACGC	1 cut(s)	728
Hin1II	CATG	4 cut(s)	113, 451, 553, 821
HindIII	AAGCTT	2 cut(s)	594, 795
HinfI	GANTC	3 cut(s)	225, 300, 444
HpaII	CCGG	1 cut(s)	531
HphI	GGTGA	2 cut(s)	202, 922
Hpy166II	GTNNAC	4 cut(s)	73, 453, 528, 986
Hpy188I	TCNGA	2 cut(s)	135, 648
Hpy188III	TCNNGA	5 cut(s)	222, 297, 441, 495, 983
Hpy8I	GTNNAC	4 cut(s)	73, 453, 528, 986
Hpy99I	CGWCG	1 cut(s)	722
HpyAV	CCTTC	2 cut(s)	444, 643
HpyCH4III	ACNGT	3 cut(s)	383, 772, 998
HpyCH4V	TGCA	7 cut(s)	91, 113, 466, 656, 781, 898, 960
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 110, 602, 787, 828
HpyF3I	CTNAG	9 cut(s)	227, 295, 344, 386, 660, 742, 749, 765, 1005
Hsp92II	CATG	4 cut(s)	113, 451, 553, 821
Ksp22I	TGATCA	3 cut(s)	126, 259, 1057
Kzo9I	GATC	7 cut(s)	126, 157, 259, 424, 664, 979, 1057
LmnI	GCTCC	2 cut(s)	9, 952
Lsp1109I	GCAGC	1 cut(s)	765
LweI	GCATC	2 cut(s)	45, 643
MaeI	CTAG	2 cut(s)	311, 353
MaeIII	GTNAC	3 cut(s)	377, 808, 992
MalI	GATC	7 cut(s)	128, 159, 261, 426, 666, 981, 1059
MboI	GATC	7 cut(s)	126, 157, 259, 424, 664, 979, 1057
MboII	GAAGA	2 cut(s)	52, 429
MhlI	GDGCHC	2 cut(s)	486, 949
MluCI	AATT	7 cut(s)	206, 469, 586, 678, 936, 955, 1021
MlyI	GAGTC	3 cut(s)	219, 309, 453
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	7 cut(s)	89, 135, 243, 304, 395, 654, 683
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	7 cut(s)	270, 278, 359, 516, 546, 612, 632
MslI	CAYNNNNRTG	2 cut(s)	822, 854
MspA1I	CMGCKG	2 cut(s)	503, 778
MspI	CCGG	1 cut(s)	531
MspR9I	CCNGG	1 cut(s)	1034
MssI	GTTTAAAC	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	1034
MvnI	CGCG	1 cut(s)	364
MwoI	GCNNNNNNNGC	5 cut(s)	33, 110, 602, 787, 828
NdeII	GATC	7 cut(s)	126, 157, 259, 424, 664, 979, 1057
NlaIII	CATG	4 cut(s)	113, 451, 553, 821
NlaIV	GGNNCC	1 cut(s)	948
NmuCI	GTSAC	2 cut(s)	377, 992
OliI	CACNNNNGTG	1 cut(s)	854
PaqCI	CACCTGC	1 cut(s)	295
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	473
PflFI	GACNNNGTC	1 cut(s)	228
PfoI	TCCNGGA	1 cut(s)	1032
PinAI	ACCGGT	1 cut(s)	530
PkrI	GCNGC	1 cut(s)	780
PleI	GAGTC	3 cut(s)	219, 308, 452
PmeI	GTTTAAAC	1 cut(s)	279
PpsI	GAGTC	3 cut(s)	219, 308, 452
PshBI	ATTAAT	1 cut(s)	612
PsiI	TTATAA	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	1032
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	1032
PspN4I	GGNNCC	1 cut(s)	948
PspPI	GGNCC	2 cut(s)	497, 541
PstI	CTGCAG	1 cut(s)	783
PsyI	GACNNNGTC	1 cut(s)	228
PvuII	CAGCTG	1 cut(s)	778
RsaI	GTAC	2 cut(s)	12, 21
RsaNI	GTAC	2 cut(s)	11, 20
RseI	CAYNNNNRTG	2 cut(s)	822, 854
SaqAI	TTAA	7 cut(s)	270, 278, 359, 516, 546, 612, 632
SatI	GCNGC	1 cut(s)	779
Sau3AI	GATC	7 cut(s)	126, 157, 259, 424, 664, 979, 1057
Sau96I	GGNCC	2 cut(s)	497, 541
SchI	GAGTC	3 cut(s)	219, 309, 453
ScrFI	CCNGG	1 cut(s)	1034
SduI	GDGCHC	2 cut(s)	486, 949
SfaNI	GCATC	2 cut(s)	45, 643
SfcI	CTRYAG	1 cut(s)	779
SinI	GGWCC	1 cut(s)	497
SmiI	ATTTAAAT	1 cut(s)	633
SmiMI	CAYNNNNRTG	2 cut(s)	822, 854
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
Sse9I	AATT	7 cut(s)	206, 469, 586, 678, 936, 955, 1021
SsiI	CCGC	2 cut(s)	399, 503
SspMI	CTAG	2 cut(s)	311, 353
StyD4I	CCNGG	1 cut(s)	1032
StyI	CCWWGG	1 cut(s)	352
SwaI	ATTTAAAT	1 cut(s)	633
TaaI	ACNGT	3 cut(s)	383, 772, 998
TaqI	TCGA	3 cut(s)	146, 156, 223
TasI	AATT	7 cut(s)	206, 469, 586, 678, 936, 955, 1021
TatI	WGTACW	1 cut(s)	10
Tru1I	TTAA	7 cut(s)	270, 278, 359, 516, 546, 612, 632
Tru9I	TTAA	7 cut(s)	270, 278, 359, 516, 546, 612, 632
TscAI	CASTG	3 cut(s)	386, 753, 856
TseFI	GTSAC	2 cut(s)	377, 992
TseI	GCWGC	1 cut(s)	778
Tsp45I	GTSAC	2 cut(s)	377, 992
TspDTI	ATGAA	2 cut(s)	462, 887
TspRI	CASTG	3 cut(s)	386, 753, 856
Tth111I	GACNNNGTC	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	497
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	2 cut(s)	206, 469
XmaJI	CCTAGG	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	2 cut(s)	311, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.