Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009587

Physical Location & Seq

Genomic Coordinates Forward (+)

30071754 .. 30076424

Gene Structure 4671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g31600.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGTCTCTCCAAGGAACAGTTGCTTGCCCGCTTAAAGGAGCTACAAGTCGATTTTTCCCACCATGAACATCCTGTTGTTCTGACAGTTGAAGCTCAGGCCAAATATGTTGGACATCTGGGAGGTGGACTAAGTAAAAATTTATTCCTGAAGGACAAGAAAAGTAGGTTCTACATTGTTTCCGCTTTGGCAGATACTAAAGTTGATCTGAAAGTTCTGTCTGTGAGGCTTGGTTTGGGAAAAGGTGGCTTGAGAATGGCTCCTGAAGAAGCACTTGGAGAAATACTTCAGGTGCCTCTGGGATGTGTTACTCCATTTTCTCTGGTGAATGAATCTGCACGCCATGTGTCTCTGTTGTTGGATCAAAAATTTAAAAGTCAGGAGCGGTGCTTCTTCCACCCTCTGTCAAATGACGTGTCAATCTCGCTTAGTACCCATGATCTTGACAAGTTTCTAAAATCAATTGGGAGAGACCCCTCATATGTTGACTTGGAGGCTAACCCATCAGTTGGAAAGGATCAACCACCTGATCTTGCATGCTTTGTTCCATCTGGTTCCACAGTGTTGCCAGAACCTCCACAATCAGCAGCTTCCTCTAAAGGTCATGCAGAAATTCAAATTTCTGTCTCTAACAAATCAACAGCAAGTACAGTCTCTTCTAAGCCATCCAGTAGTGCAAAAAGTGCCAAGGACAAACAGGTCAATGGTGTGAATGTGTCAAAGACCGTAGCAGATGTTGGAAGTTTGGTTGAAGATTTACTCGATAGAACATCTTCTCTATTGCTTTCAGAGATCACTGAGGAGACTATTAAGAAACATGAAGGACAATTAGGAACTAAGGTATCAGATAGTATCAGAAGCCGACTTCGAGAAGATTTCGAGAGAACACTTATGATATTTAAATCCACCGCATATACCGAAGGGTTTTCTGCTGGCAAGCACCATCATCCACACCGTACGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 tRNA_edit

Protein Analysis

322

Amino Acids

34.94

Weight (kDa)

8.29

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44835 AT1G44835
fragaria_vesca	FvH4_2g26610 FvH4_2g26610 FvH4_2g26610
malus_domestica	MD15G1352500.v1.1
prunus_persica	Prupe.1G501000_v2.0.a1 Prupe.1G501000_v2.0.a1
pyrus_communis	pycom08g14240 pycom15g31600
rosa_chinensis	RchiOBHm_Chr6g0295461
rosa_laevigata	RLG00000011799
rosa_multiflora	Rmu_sc0016348.1_g000001 Rmu_sc0019562.1_g000003
rosa_roxburghii	Rroxscaffold_7G00172450
rosa_rugosa	Rorug06G0251000 Rorug06G0251100
rosa_samantha	Rh6AG364300 Rh6BG372600 Rh6CG378900 Rh6DG365300
rosa_wichuraiana	Rw6G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	698
AccB1I	GGYRCC	1 cut(s)	292
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccBSI	CCGCTC	1 cut(s)	385
AciI	CCGC	4 cut(s)	31, 183, 385, 909
AclWI	GGATC	2 cut(s)	369, 525
AcsI	RAATTY	4 cut(s)	139, 368, 612, 618
AcuI	CTGAAG	3 cut(s)	170, 272, 285
AfaI	GTAC	3 cut(s)	433, 649, 958
AfiI	CCNNNNNNNGG	2 cut(s)	37, 509
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	3 cut(s)	92, 617, 752
AjiI	CACGTC	1 cut(s)	415
AjuI	GAANNNNNNNTTGG	2 cut(s)	258, 290
AluBI	AGCT	3 cut(s)	43, 95, 590
AluI	AGCT	3 cut(s)	43, 95, 590
Alw26I	GTCTC	6 cut(s)	11, 354, 465, 631, 658, 797
AlwI	GGATC	2 cut(s)	369, 525
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	4 cut(s)	139, 368, 612, 618
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
Asp700I	GAANNNNTTC	2 cut(s)	285, 772
AsuHPI	GGTGA	1 cut(s)	337
BaeI	ACNNNNGTAYC	4 cut(s)	186, 219, 825, 858
BanI	GGYRCC	1 cut(s)	292
BarI	GAAGNNNNNNTAC	2 cut(s)	640, 672
BbvI	GCAGC	1 cut(s)	599
BccI	CCATC	4 cut(s)	511, 556, 673, 951
BcoDI	GTCTC	6 cut(s)	11, 354, 465, 631, 658, 797
BisI	GCNGC	1 cut(s)	588
BlsI	GCNGC	1 cut(s)	589
BmgBI	CACGTC	1 cut(s)	415
BmiI	GGNNCC	3 cut(s)	261, 294, 556
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	271
BsaAI	YACGTR	1 cut(s)	960
BsaI	GGTCTC	2 cut(s)	11, 465
BsaJI	CCNNGG	2 cut(s)	12, 687
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 509
Bse1I	ACTGG	1 cut(s)	669
BseDI	CCNNGG	2 cut(s)	12, 687
BseGI	GGATG	4 cut(s)	70, 308, 665, 946
BseLI	CCNNNNNNNGG	2 cut(s)	37, 509
BseMII	CTCAG	2 cut(s)	110, 789
BseNI	ACTGG	1 cut(s)	669
BseRI	GAGGAG	1 cut(s)	815
BseXI	GCAGC	1 cut(s)	599
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	292
BsiWI	CGTACG	1 cut(s)	956
BslI	CCNNNNNNNGG	2 cut(s)	37, 509
BsmAI	GTCTC	6 cut(s)	11, 354, 465, 631, 658, 797
BsnI	GGCC	1 cut(s)	101
Bso31I	GGTCTC	2 cut(s)	11, 465
Bsp143I	GATC	6 cut(s)	205, 361, 439, 517, 529, 792
BspACI	CCGC	4 cut(s)	31, 183, 385, 909
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	109, 790
BspLI	GGNNCC	3 cut(s)	261, 294, 556
BspPI	GGATC	2 cut(s)	369, 525
BspT107I	GGYRCC	1 cut(s)	292
BspTNI	GGTCTC	2 cut(s)	11, 465
BsrBI	CCGCTC	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	669
BssECI	CCNNGG	2 cut(s)	12, 687
BssMI	GATC	6 cut(s)	205, 361, 439, 517, 529, 792
BssT1I	CCWWGG	2 cut(s)	12, 687
Bst4CI	ACNGT	6 cut(s)	21, 88, 562, 652, 727, 956
Bst6I	CTCTTC	1 cut(s)	661
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstBAI	YACGTR	1 cut(s)	960
BstC8I	GCNNGC	6 cut(s)	27, 31, 340, 538, 934, 938
BstDEI	CTNAG	6 cut(s)	96, 131, 428, 660, 798, 837
BstF5I	GGATG	4 cut(s)	70, 308, 665, 946
BstKTI	GATC	6 cut(s)	208, 364, 442, 520, 532, 795
BstMAI	GTCTC	6 cut(s)	11, 354, 465, 631, 658, 797
BstMBI	GATC	6 cut(s)	205, 361, 439, 517, 529, 792
BstMWI	GCNNNNNNNGC	1 cut(s)	683
BstNSI	RCATGY	1 cut(s)	540
BstSNI	TACGTA	1 cut(s)	960
BstV1I	GCAGC	1 cut(s)	599
BsuRI	GGCC	1 cut(s)	101
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	4 cut(s)	70, 308, 665, 946
BtsIMutI	CAGTG	2 cut(s)	567, 795
Cac8I	GCNNGC	6 cut(s)	27, 31, 340, 538, 934, 938
Csp6I	GTAC	3 cut(s)	432, 648, 957
CviAII	CATG	6 cut(s)	65, 344, 437, 537, 605, 818
CviQI	GTAC	3 cut(s)	432, 648, 957
DdeI	CTNAG	6 cut(s)	96, 131, 428, 660, 798, 837
DpnI	GATC	6 cut(s)	207, 363, 441, 519, 531, 794
DpnII	GATC	6 cut(s)	205, 361, 439, 517, 529, 792
DraI	TTTAAA	2 cut(s)	373, 901
DrdI	GACNNNNNNGTC	1 cut(s)	698
DseDI	GACNNNNNNGTC	1 cut(s)	698
Eam1104I	CTCTTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	661
Eco105I	TACGTA	1 cut(s)	960
Eco130I	CCWWGG	2 cut(s)	12, 687
Eco31I	GGTCTC	2 cut(s)	11, 465
Eco57I	CTGAAG	3 cut(s)	170, 272, 285
EcoT14I	CCWWGG	2 cut(s)	12, 687
ErhI	CCWWGG	2 cut(s)	12, 687
FaeI	CATG	6 cut(s)	68, 347, 440, 540, 608, 821
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	6 cut(s)	64, 343, 436, 536, 604, 817
FauI	CCCGC	1 cut(s)	38
FauNDI	CATATG	1 cut(s)	481
Fnu4HI	GCNGC	1 cut(s)	588
FokI	GGATG	4 cut(s)	57, 315, 652, 933
Fsp4HI	GCNGC	1 cut(s)	588
GluI	GCNGC	1 cut(s)	588
HaeIII	GGCC	1 cut(s)	101
Hin1II	CATG	6 cut(s)	68, 347, 440, 540, 608, 821
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	1 cut(s)	332
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	128, 487
Hpy188I	TCNGA	5 cut(s)	84, 210, 790, 847, 857
Hpy188III	TCNNGA	6 cut(s)	148, 263, 380, 443, 869, 880
Hpy8I	GTNNAC	2 cut(s)	128, 487
HpyAV	CCTTC	3 cut(s)	145, 815, 914
HpyCH4III	ACNGT	6 cut(s)	21, 88, 562, 652, 727, 956
HpyCH4IV	ACGT	2 cut(s)	414, 959
HpyCH4V	TGCA	4 cut(s)	338, 536, 608, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	683
HpyF3I	CTNAG	6 cut(s)	96, 131, 428, 660, 798, 837
HpySE526I	ACGT	2 cut(s)	414, 959
Hsp92II	CATG	6 cut(s)	68, 347, 440, 540, 608, 821
Kzo9I	GATC	6 cut(s)	205, 361, 439, 517, 529, 792
LmnI	GCTCC	3 cut(s)	40, 265, 382
Lsp1109I	GCAGC	1 cut(s)	599
MaeII	ACGT	2 cut(s)	414, 959
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	6 cut(s)	207, 363, 441, 519, 531, 794
MbiI	CCGCTC	1 cut(s)	385
MboI	GATC	6 cut(s)	205, 361, 439, 517, 529, 792
MboII	GAAGA	6 cut(s)	278, 385, 648, 764, 765, 884
MfeI	CAATTG	1 cut(s)	462
MluCI	AATT	6 cut(s)	139, 368, 462, 612, 618, 827
MmeI	TCCRAC	4 cut(s)	91, 339, 490, 718
MnlI	CCTC	9 cut(s)	116, 219, 306, 411, 487, 487, 585, 604, 793
MroXI	GAANNNNTTC	2 cut(s)	285, 772
MseI	TTAA	4 cut(s)	35, 372, 810, 900
MunI	CAATTG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	683
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	6 cut(s)	205, 361, 439, 517, 529, 792
NlaIII	CATG	6 cut(s)	68, 347, 440, 540, 608, 821
NlaIV	GGNNCC	3 cut(s)	261, 294, 556
NspI	RCATGY	1 cut(s)	540
PaeI	GCATGC	1 cut(s)	540
PdmI	GAANNNNTTC	2 cut(s)	285, 772
PfeI	GAWTC	1 cut(s)	332
Pfl23II	CGTACG	1 cut(s)	956
PflMI	CCANNNNNTGG	1 cut(s)	509
PkrI	GCNGC	1 cut(s)	589
Ppu21I	YACGTR	1 cut(s)	960
PspLI	CGTACG	1 cut(s)	956
PspN4I	GGNNCC	3 cut(s)	261, 294, 556
RsaI	GTAC	3 cut(s)	433, 649, 958
RsaNI	GTAC	3 cut(s)	432, 648, 957
SaqAI	TTAA	4 cut(s)	35, 372, 810, 900
SatI	GCNGC	1 cut(s)	588
Sau3AI	GATC	6 cut(s)	205, 361, 439, 517, 529, 792
SmiI	ATTTAAAT	1 cut(s)	901
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
SnaBI	TACGTA	1 cut(s)	960
SphI	GCATGC	1 cut(s)	540
Sse9I	AATT	6 cut(s)	139, 368, 462, 612, 618, 827
SsiI	CCGC	4 cut(s)	31, 183, 385, 909
StyI	CCWWGG	2 cut(s)	12, 687
SwaI	ATTTAAAT	1 cut(s)	901
TaaI	ACNGT	6 cut(s)	21, 88, 562, 652, 727, 956
TaiI	ACGT	2 cut(s)	417, 962
TaqI	TCGA	4 cut(s)	51, 762, 868, 879
TasI	AATT	6 cut(s)	139, 368, 462, 612, 618, 827
TatI	WGTACW	1 cut(s)	647
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	4 cut(s)	35, 372, 810, 900
Tru9I	TTAA	4 cut(s)	35, 372, 810, 900
TscAI	CASTG	2 cut(s)	567, 802
TseI	GCWGC	1 cut(s)	587
TspDTI	ATGAA	3 cut(s)	81, 345, 834
TspRI	CASTG	2 cut(s)	567, 802
Van91I	CCANNNNNTGG	1 cut(s)	509
XapI	RAATTY	4 cut(s)	139, 368, 612, 618
XceI	RCATGY	1 cut(s)	540
XmnI	GAANNNNTTC	2 cut(s)	285, 772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.