prolyl-tRNA synthetase associated domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G44835 AT1G44835 |
| fragaria_vesca | FvH4_2g26610 FvH4_2g26610 FvH4_2g26610 |
| malus_domestica | MD15G1352500.v1.1 |
| prunus_persica | Prupe.1G501000_v2.0.a1 Prupe.1G501000_v2.0.a1 |
| pyrus_communis | pycom08g14240 pycom15g31600 |
| rosa_chinensis | RchiOBHm_Chr6g0295461 |
| rosa_laevigata | RLG00000011799 |
| rosa_multiflora | Rmu_sc0016348.1_g000001 Rmu_sc0019562.1_g000003 |
| rosa_roxburghii | Rroxscaffold_7G00172450 |
| rosa_rugosa | Rorug06G0251000 Rorug06G0251100 |
| rosa_samantha | Rh6AG364300 Rh6BG372600 Rh6CG378900 Rh6DG365300 |
| rosa_wichuraiana | Rw6G031810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 221, 233, 257, 309, 312 |
| AcoI | YGGCCR | 3 cut(s) | 222, 234, 258 |
| AcuI | CTGAAG | 1 cut(s) | 10 |
| AfaI | GTAC | 1 cut(s) | 13 |
| AluBI | AGCT | 1 cut(s) | 83 |
| AluI | AGCT | 1 cut(s) | 83 |
| Alw21I | GWGCWC | 1 cut(s) | 39 |
| AoxI | GGCC | 4 cut(s) | 105, 222, 234, 258 |
| AspA2I | CCTAGG | 1 cut(s) | 190 |
| AsuHPI | GGTGA | 2 cut(s) | 188, 326 |
| AvrII | CCTAGG | 1 cut(s) | 190 |
| BbsI | GAAGAC | 2 cut(s) | 16, 125 |
| Bbv12I | GWGCWC | 1 cut(s) | 39 |
| BccI | CCATC | 1 cut(s) | 311 |
| BclI | TGATCA | 1 cut(s) | 201 |
| BfaI | CTAG | 1 cut(s) | 191 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 266 |
| BisI | GCNGC | 4 cut(s) | 222, 234, 258, 310 |
| BlnI | CCTAGG | 1 cut(s) | 190 |
| BlsI | GCNGC | 4 cut(s) | 223, 235, 259, 311 |
| BpiI | GAAGAC | 2 cut(s) | 16, 125 |
| BsaJI | CCNNGG | 1 cut(s) | 190 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 112, 142 |
| BseDI | CCNNGG | 1 cut(s) | 190 |
| BseYI | CCCAGC | 1 cut(s) | 131 |
| BshFI | GGCC | 4 cut(s) | 107, 224, 236, 260 |
| BsiHKAI | GWGCWC | 1 cut(s) | 39 |
| BsnI | GGCC | 4 cut(s) | 107, 224, 236, 260 |
| Bsp1286I | GDGCHC | 1 cut(s) | 39 |
| Bsp143I | GATC | 1 cut(s) | 201 |
| BspACI | CCGC | 5 cut(s) | 221, 233, 257, 309, 312 |
| BspANI | GGCC | 4 cut(s) | 107, 224, 236, 260 |
| BspQI | GCTCTTC | 1 cut(s) | 44 |
| BssECI | CCNNGG | 1 cut(s) | 190 |
| BssMI | GATC | 1 cut(s) | 201 |
| BssT1I | CCWWGG | 1 cut(s) | 190 |
| Bst4CI | ACNGT | 2 cut(s) | 34, 176 |
| Bst6I | CTCTTC | 1 cut(s) | 44 |
| BstC8I | GCNNGC | 3 cut(s) | 219, 231, 271 |
| BstDEI | CTNAG | 1 cut(s) | 61 |
| BstEII | GGTNACC | 1 cut(s) | 176 |
| BstKTI | GATC | 1 cut(s) | 204 |
| BstMBI | GATC | 1 cut(s) | 201 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 230, 254, 266 |
| BstPI | GGTNACC | 1 cut(s) | 176 |
| BstV2I | GAAGAC | 2 cut(s) | 16, 125 |
| BsuRI | GGCC | 4 cut(s) | 107, 224, 236, 260 |
| Cac8I | GCNNGC | 3 cut(s) | 219, 231, 271 |
| CseI | GACGC | 2 cut(s) | 124, 326 |
| Csp6I | GTAC | 1 cut(s) | 12 |
| CviAII | CATG | 1 cut(s) | 226 |
| CviJI | RGCY | 7 cut(s) | 83, 107, 115, 224, 236, 248, 260 |
| CviKI_1 | RGCY | 7 cut(s) | 83, 107, 115, 224, 236, 248, 260 |
| CviQI | GTAC | 1 cut(s) | 12 |
| DdeI | CTNAG | 1 cut(s) | 61 |
| DpnI | GATC | 1 cut(s) | 203 |
| DpnII | GATC | 1 cut(s) | 201 |
| EaeI | YGGCCR | 3 cut(s) | 222, 234, 258 |
| Eam1104I | CTCTTC | 1 cut(s) | 44 |
| EarI | CTCTTC | 1 cut(s) | 44 |
| Eco130I | CCWWGG | 1 cut(s) | 190 |
| Eco57I | CTGAAG | 1 cut(s) | 10 |
| Eco91I | GGTNACC | 1 cut(s) | 176 |
| EcoO65I | GGTNACC | 1 cut(s) | 176 |
| EcoT14I | CCWWGG | 1 cut(s) | 190 |
| ErhI | CCWWGG | 1 cut(s) | 190 |
| FaeI | CATG | 1 cut(s) | 229 |
| FaiI | YATR | 3 cut(s) | 227, 324, 331 |
| FatI | CATG | 1 cut(s) | 225 |
| FbaI | TGATCA | 1 cut(s) | 201 |
| Fnu4HI | GCNGC | 4 cut(s) | 222, 234, 258, 310 |
| Fsp4HI | GCNGC | 4 cut(s) | 222, 234, 258, 310 |
| FspBI | CTAG | 1 cut(s) | 191 |
| GluI | GCNGC | 4 cut(s) | 222, 234, 258, 310 |
| GsaI | CCCAGC | 1 cut(s) | 135 |
| HaeIII | GGCC | 4 cut(s) | 107, 224, 236, 260 |
| HgaI | GACGC | 2 cut(s) | 124, 326 |
| Hin1II | CATG | 1 cut(s) | 229 |
| HphI | GGTGA | 2 cut(s) | 188, 326 |
| Hpy166II | GTNNAC | 1 cut(s) | 172 |
| Hpy188I | TCNGA | 1 cut(s) | 29 |
| Hpy8I | GTNNAC | 1 cut(s) | 172 |
| HpyCH4III | ACNGT | 2 cut(s) | 34, 176 |
| HpyCH4V | TGCA | 1 cut(s) | 229 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 230, 254, 266 |
| HpyF3I | CTNAG | 1 cut(s) | 61 |
| Hsp92II | CATG | 1 cut(s) | 229 |
| Ksp22I | TGATCA | 1 cut(s) | 201 |
| Kzo9I | GATC | 1 cut(s) | 201 |
| LguI | GCTCTTC | 1 cut(s) | 44 |
| LpnPI | CCDG | 3 cut(s) | 145, 194, 255 |
| MaeI | CTAG | 1 cut(s) | 191 |
| MaeIII | GTNAC | 3 cut(s) | 64, 176, 314 |
| MalI | GATC | 1 cut(s) | 203 |
| MboI | GATC | 1 cut(s) | 201 |
| MboII | GAAGA | 6 cut(s) | 16, 31, 34, 37, 40, 130 |
| MhlI | GDGCHC | 1 cut(s) | 39 |
| MluCI | AATT | 1 cut(s) | 205 |
| MnlI | CCTC | 2 cut(s) | 207, 259 |
| MspA1I | CMGCKG | 2 cut(s) | 83, 309 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 230, 254, 266 |
| NdeII | GATC | 1 cut(s) | 201 |
| NlaIII | CATG | 1 cut(s) | 229 |
| NmuCI | GTSAC | 2 cut(s) | 176, 314 |
| PciSI | GCTCTTC | 1 cut(s) | 44 |
| PkrI | GCNGC | 4 cut(s) | 223, 235, 259, 311 |
| PspEI | GGTNACC | 1 cut(s) | 176 |
| PspFI | CCCAGC | 1 cut(s) | 131 |
| PvuII | CAGCTG | 1 cut(s) | 83 |
| RsaI | GTAC | 1 cut(s) | 13 |
| RsaNI | GTAC | 1 cut(s) | 12 |
| SapI | GCTCTTC | 1 cut(s) | 44 |
| SatI | GCNGC | 4 cut(s) | 222, 234, 258, 310 |
| Sau3AI | GATC | 1 cut(s) | 201 |
| SduI | GDGCHC | 1 cut(s) | 39 |
| SetI | ASST | 3 cut(s) | 85, 171, 192 |
| Sse9I | AATT | 1 cut(s) | 205 |
| SsiI | CCGC | 5 cut(s) | 221, 233, 257, 309, 312 |
| SspMI | CTAG | 1 cut(s) | 191 |
| StyI | CCWWGG | 1 cut(s) | 190 |
| TaaI | ACNGT | 2 cut(s) | 34, 176 |
| TasI | AATT | 1 cut(s) | 205 |
| TauI | GCSGC | 4 cut(s) | 224, 236, 260, 312 |
| TseFI | GTSAC | 2 cut(s) | 176, 314 |
| Tsp45I | GTSAC | 2 cut(s) | 176, 314 |
| XmaJI | CCTAGG | 1 cut(s) | 190 |
| XspI | CTAG | 1 cut(s) | 191 |