Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016348.1

Orthogroup ID

OG0009587

Physical Location & Seq

Genomic Coordinates Forward (+)

3791 .. 7515

Gene Structure 3725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016348.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgggtctttccaaggaacagttgcttgccctcttaaaggagcttcagattgatttttcccagtatgatcatcctgttgttttgacagttgaggctcaggcaaaatatgttggacatctgcgaggtggactcagtaaaaatttgttcttgaaggataagaagagtaggttctatattgtttccgctttggcagatactaaagtagatctgaaagttctatctgtgaggcttggtttgggaaaaggtggcttgagaatggctcctgaagaagcactgggagaaatacttcaggtcccattgggttgtgttactcctttatcactggtgaacgaatctgcatgcaatgtctctctgctgttggatcaaaaatttaaaagtcaggagttttgcttcttccacccattatcgaatgacatgtcaatctcactaaccaccaatggtctcgacaagtttcttaagtcaattaagagagacccctcatatgttgacttggaggctaacccatcggttgggaaggaccaacctcctgatcttgcatctcttgttccatctagttccgtagtattgccagatcccccggaaacagcagcttcctcgaaagatcgcacagaaaatacagtttctgtgggcaacaagtccacaaaaagtacagtgagcacttctaagccatccattaatgctaaaaaaacccaggataaaccagccaacataacagatgttggaaaaatggttgatgacttactggattcaacatcttcgctagtgctgaaagagattacagaggagaatattaaggaacatggagaagagcttggagaattgttatcaaagaaaattaaaaatcaattagctgcagaattgcacaacacgattatgatattcaaaaacactgcatacacagaaggattccacgctgggatgcactgtcatccaaagcgttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 tRNA_edit

Protein Analysis

314

Amino Acids

34.26

Weight (kDa)

6.72

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44835 AT1G44835
fragaria_vesca	FvH4_2g26610 FvH4_2g26610 FvH4_2g26610
malus_domestica	MD15G1352500.v1.1
prunus_persica	Prupe.1G501000_v2.0.a1 Prupe.1G501000_v2.0.a1
pyrus_communis	pycom08g14240 pycom15g31600
rosa_chinensis	RchiOBHm_Chr6g0295461
rosa_laevigata	RLG00000011799
rosa_multiflora	Rmu_sc0016348.1_g000001 Rmu_sc0019562.1_g000003
rosa_roxburghii	Rroxscaffold_7G00172450
rosa_rugosa	Rorug06G0251000 Rorug06G0251100
rosa_samantha	Rh6AG364300 Rh6BG372600 Rh6CG378900 Rh6DG365300
rosa_wichuraiana	Rw6G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	509
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	2 cut(s)	369, 566
AcsI	RAATTY	2 cut(s)	139, 368
AcuI	CTGAAG	3 cut(s)	29, 272, 285
AfaI	GTAC	1 cut(s)	649
AfiI	CCNNNNNNNGG	2 cut(s)	37, 509
AflII	CTTAAG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	3 cut(s)	151, 750, 883
AjnI	CCWGG	1 cut(s)	690
AluBI	AGCT	4 cut(s)	43, 590, 811, 851
AluI	AGCT	4 cut(s)	43, 590, 811, 851
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	3 cut(s)	352, 446, 465
AlwI	GGATC	2 cut(s)	369, 566
AlwNI	CAGNNNCTG	1 cut(s)	623
ApeKI	GCWGC	2 cut(s)	587, 851
ApoI	RAATTY	2 cut(s)	139, 368
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
AseI	ATTAAT	1 cut(s)	675
Asp700I	GAANNNNTTC	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	292, 517
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	1 cut(s)	337
AvaII	GGWCC	2 cut(s)	292, 517
BaeI	ACNNNNGTAYC	2 cut(s)	186, 219
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	599, 838
BccI	CCATC	3 cut(s)	511, 556, 676
BcgI	CGANNNNNNTGC	2 cut(s)	576, 610
BciT130I	CCWGG	1 cut(s)	692
BclI	TGATCA	1 cut(s)	67
BcnI	CCSGG	1 cut(s)	578
BcoDI	GTCTC	3 cut(s)	352, 446, 465
BfaI	CTAG	2 cut(s)	552, 761
BfmI	CTRYAG	1 cut(s)	852
BfrI	CTTAAG	1 cut(s)	455
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	2 cut(s)	588, 852
BlsI	GCNGC	2 cut(s)	589, 853
Bme1390I	CCNGG	2 cut(s)	578, 692
Bme18I	GGWCC	2 cut(s)	292, 517
BmgT120I	GGNCC	2 cut(s)	292, 517
BmiI	GGNNCC	2 cut(s)	261, 294
BmrFI	CCNGG	2 cut(s)	578, 692
BmrI	ACTGGG	2 cut(s)	55, 284
BmsI	GCATC	2 cut(s)	545, 909
BmuI	ACTGGG	2 cut(s)	55, 284
BplI	GAGNNNNNCTC	4 cut(s)	114, 146, 244, 276
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	578
BsaI	GGTCTC	2 cut(s)	446, 465
BsaJI	CCNNGG	3 cut(s)	12, 576, 690
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 509
Bse1I	ACTGG	4 cut(s)	61, 279, 327, 747
Bse3DI	GCAATG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	692
BseDI	CCNNGG	3 cut(s)	12, 576, 690
BseGI	GGATG	4 cut(s)	70, 668, 924, 928
BseLI	CCNNNNNNNGG	2 cut(s)	37, 509
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	2 cut(s)	110, 145
BseNI	ACTGG	4 cut(s)	61, 279, 327, 747
BseRI	GAGGAG	1 cut(s)	797
BseXI	GCAGC	2 cut(s)	599, 838
BseYI	CCCAGC	1 cut(s)	914
BsiHKAI	GWGCWC	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	578
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	37, 509
BsmAI	GTCTC	3 cut(s)	352, 446, 465
BsmFI	GGGAC	1 cut(s)	278
Bso31I	GGTCTC	2 cut(s)	446, 465
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	6 cut(s)	67, 205, 361, 529, 571, 601
BspACI	CCGC	1 cut(s)	183
BspCNI	CTCAG	2 cut(s)	109, 144
BspLI	GGNNCC	2 cut(s)	261, 294
BspMAI	CTGCAG	1 cut(s)	856
BspPI	GGATC	2 cut(s)	369, 566
BspQI	GCTCTTC	1 cut(s)	801
BspTI	CTTAAG	1 cut(s)	455
BspTNI	GGTCTC	2 cut(s)	446, 465
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	4 cut(s)	61, 279, 327, 747
BssECI	CCNNGG	3 cut(s)	12, 576, 690
BssMI	GATC	6 cut(s)	67, 205, 361, 529, 571, 601
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	692
Bst4CI	ACNGT	5 cut(s)	21, 88, 619, 652, 926
Bst6I	CTCTTC	2 cut(s)	155, 801
BstAFI	CTTAAG	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	27, 340
BstDEI	CTNAG	4 cut(s)	96, 131, 663, 942
BstENI	CCTNNNNNAGG	1 cut(s)	35
BstF5I	GGATG	4 cut(s)	70, 668, 924, 928
BstKTI	GATC	6 cut(s)	70, 208, 364, 532, 574, 604
BstMAI	GTCTC	3 cut(s)	352, 446, 465
BstMBI	GATC	6 cut(s)	67, 205, 361, 529, 571, 601
BstNI	CCWGG	1 cut(s)	692
BstNSI	RCATGY	2 cut(s)	342, 418
BstSCI	CCNGG	2 cut(s)	576, 690
BstSFI	CTRYAG	1 cut(s)	852
BstV1I	GCAGC	2 cut(s)	599, 838
BstX2I	RGATCY	2 cut(s)	205, 571
BstYI	RGATCY	2 cut(s)	205, 571
BtsCI	GGATG	4 cut(s)	70, 668, 924, 928
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	5 cut(s)	272, 320, 657, 888, 922
Cac8I	GCNNGC	2 cut(s)	27, 340
CaiI	CAGNNNCTG	1 cut(s)	623
Cfr13I	GGNCC	2 cut(s)	292, 517
Csp6I	GTAC	1 cut(s)	648
CviAII	CATG	3 cut(s)	339, 415, 800
CviQI	GTAC	1 cut(s)	648
DdeI	CTNAG	4 cut(s)	96, 131, 663, 942
DpnI	GATC	6 cut(s)	69, 207, 363, 531, 573, 603
DpnII	GATC	6 cut(s)	67, 205, 361, 529, 571, 601
DraI	TTTAAA	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	155, 801
EarI	CTCTTC	2 cut(s)	155, 801
Eco130I	CCWWGG	1 cut(s)	12
Eco31I	GGTCTC	2 cut(s)	446, 465
Eco47I	GGWCC	2 cut(s)	292, 517
Eco57I	CTGAAG	3 cut(s)	29, 272, 285
EcoNI	CCTNNNNNAGG	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	690
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	3 cut(s)	342, 418, 803
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	3 cut(s)	338, 414, 799
FauNDI	CATATG	1 cut(s)	481
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	588, 852
FokI	GGATG	4 cut(s)	57, 655, 915, 931
Fsp4HI	GCNGC	2 cut(s)	588, 852
FspBI	CTAG	2 cut(s)	552, 761
GluI	GCNGC	2 cut(s)	588, 852
GsaI	CCCAGC	1 cut(s)	918
HapII	CCGG	1 cut(s)	578
Hin1II	CATG	3 cut(s)	342, 418, 803
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	4 cut(s)	129, 332, 746, 906
HpaII	CCGG	1 cut(s)	578
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	4 cut(s)	128, 328, 487, 639
Hpy188I	TCNGA	2 cut(s)	48, 210
Hpy188III	TCNNGA	5 cut(s)	148, 263, 380, 443, 527
Hpy8I	GTNNAC	4 cut(s)	128, 328, 487, 639
HpyAV	CCTTC	3 cut(s)	145, 508, 896
HpyCH4III	ACNGT	5 cut(s)	21, 88, 619, 652, 926
HpyCH4V	TGCA	7 cut(s)	338, 342, 536, 854, 862, 893, 922
HpyF3I	CTNAG	4 cut(s)	96, 131, 663, 942
Hsp92II	CATG	3 cut(s)	342, 418, 803
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	6 cut(s)	67, 205, 361, 529, 571, 601
LguI	GCTCTTC	1 cut(s)	801
LmnI	GCTCC	2 cut(s)	40, 265
Lsp1109I	GCAGC	2 cut(s)	599, 838
LweI	GCATC	2 cut(s)	545, 909
MaeI	CTAG	2 cut(s)	552, 761
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	6 cut(s)	69, 207, 363, 531, 573, 603
MboI	GATC	6 cut(s)	67, 205, 361, 529, 571, 601
MboII	GAAGA	5 cut(s)	172, 278, 385, 747, 818
MflI	RGATCY	2 cut(s)	205, 571
MhlI	GDGCHC	1 cut(s)	659
MluCI	AATT	7 cut(s)	139, 368, 462, 818, 834, 845, 857
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	3 cut(s)	91, 339, 700
MnlI	CCTC	9 cut(s)	41, 85, 116, 219, 487, 487, 534, 604, 775
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	7 cut(s)	35, 372, 456, 465, 675, 792, 837
MslI	CAYNNNNRTG	1 cut(s)	872
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	1 cut(s)	578
MspR9I	CCNGG	2 cut(s)	578, 692
MvaI	CCWGG	1 cut(s)	692
NciI	CCSGG	1 cut(s)	578
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	6 cut(s)	67, 205, 361, 529, 571, 601
NlaIII	CATG	3 cut(s)	342, 418, 803
NlaIV	GGNNCC	2 cut(s)	261, 294
NspI	RCATGY	2 cut(s)	342, 418
PaeI	GCATGC	1 cut(s)	342
PciI	ACATGT	1 cut(s)	414
PciSI	GCTCTTC	1 cut(s)	801
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	332, 746, 906
PflMI	CCANNNNNTGG	1 cut(s)	509
PkrI	GCNGC	2 cut(s)	589, 853
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PpuMI	RGGWCCY	1 cut(s)	292
PscI	ACATGT	1 cut(s)	414
PshBI	ATTAAT	1 cut(s)	675
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	690
PspFI	CCCAGC	1 cut(s)	914
PspGI	CCWGG	1 cut(s)	690
PspN4I	GGNNCC	2 cut(s)	261, 294
PspPI	GGNCC	2 cut(s)	292, 517
PspPPI	RGGWCCY	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	856
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	2 cut(s)	205, 571
RsaI	GTAC	1 cut(s)	649
RsaNI	GTAC	1 cut(s)	648
RseI	CAYNNNNRTG	1 cut(s)	872
SapI	GCTCTTC	1 cut(s)	801
SaqAI	TTAA	7 cut(s)	35, 372, 456, 465, 675, 792, 837
SatI	GCNGC	2 cut(s)	588, 852
Sau3AI	GATC	6 cut(s)	67, 205, 361, 529, 571, 601
Sau96I	GGNCC	2 cut(s)	292, 517
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	578, 692
SduI	GDGCHC	1 cut(s)	659
SetI	ASST	9 cut(s)	45, 127, 170, 247, 294, 526, 592, 813, 853
SfaNI	GCATC	2 cut(s)	545, 909
SfcI	CTRYAG	1 cut(s)	852
SinI	GGWCC	2 cut(s)	292, 517
SmiMI	CAYNNNNRTG	1 cut(s)	872
SmlI	CTYRAG	2 cut(s)	250, 455
SmoI	CTYRAG	2 cut(s)	250, 455
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	7 cut(s)	139, 368, 462, 818, 834, 845, 857
SsiI	CCGC	1 cut(s)	183
SspI	AATATT	1 cut(s)	790
SspMI	CTAG	2 cut(s)	552, 761
StyD4I	CCNGG	2 cut(s)	576, 690
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	5 cut(s)	21, 88, 619, 652, 926
TaqI	TCGA	3 cut(s)	407, 444, 596
TasI	AATT	7 cut(s)	139, 368, 462, 818, 834, 845, 857
TatI	WGTACW	1 cut(s)	647
TfiI	GAWTC	3 cut(s)	332, 746, 906
Tru1I	TTAA	7 cut(s)	35, 372, 456, 465, 675, 792, 837
Tru9I	TTAA	7 cut(s)	35, 372, 456, 465, 675, 792, 837
TscAI	CASTG	5 cut(s)	279, 327, 657, 895, 929
TseI	GCWGC	2 cut(s)	587, 851
TspGWI	ACGGA	1 cut(s)	547
TspRI	CASTG	5 cut(s)	279, 327, 657, 895, 929
Van91I	CCANNNNNTGG	1 cut(s)	509
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	2 cut(s)	292, 517
VspI	ATTAAT	1 cut(s)	675
XagI	CCTNNNNNAGG	1 cut(s)	35
XapI	RAATTY	2 cut(s)	139, 368
XceI	RCATGY	2 cut(s)	342, 418
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	2 cut(s)	552, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.