RLG00000011799

prolyl-tRNA synthetase associated domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009587
Physical Location & Seq
Forward (+)
12770695 .. 12774335
3641 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011799

Sequence Viewer

Length: 948 bp
ATGGGTCTTTCCAAGGAACAGTTGCTTGCCCGCTTAAAGGAGCTTCAGATTGATTTTTCCCAGTATGATCATCCTGTTGTTTTGACAGTTGAGGCTCAGGCAAAATATGTTGGACATCTGGGAGGTGGACTCAGTAAAAATTTGTTCTTGAAGGATAAGAAGAGTAGGTTCTATATTGTTTCCGCTTTGGCAGATACTAAAGTAGATCTGAAAGTTCTATCTGTGAGGCTTGGTTTGGGAAAAGGTGGCTTGAGAATGGCTCCTGAAGAAGCACTGGGAGAAATACTTCAGGTCCCATTGGGTTGTGTTACTCCTTTATCACTGGTGAACGAATCTGCATGCAATGTCTCTCTGCTGTTGGATCAAAAATTTAAAAGTCAGGAGTTTTGCTTCTTCCACCCATTATCGAATGACATGTCAATCTCACTAACCACCAATGGTCTCAACAAGTTTCTTAAGTCAATTAAGATAGACCCCTCATATGTTGACTTGGAGGCTAACCCATCAGTTGGGAAGGACCAACCTCCTGATCTTGCATCTCTTGTTCCGTCTAGTTCCGTAGTATTGCCAGATCCCCCGGAAACAGCAGCTTCCTCGAAAGGTCGCATAGAAACTACAGTTTCTGTGGGCAACAAGTCCACAAAAAGTACAGTGATGAGCACTTCTAAGCCATCCATTAGTGCTAAAAAAACCCAGGATAAACCAGCCAAAATAACAGATGTTGGAAAAATGGTTGATGACTTACTGGATTCAACATCTTCGCTAGTGCTGAAAGAGATTACGGAGGAGAATATTAAGGAACATGGAGAAGAGCTTGGAGAATTGTTATCAAAGAAAATTAAAAATCAATTAGCTGCAGAATTGCACAACACGATTATGATATTCAAAAACACTGCATACACAGAAGGATTCCGCGCTGGGATGCACTGTCATCCAAAGCGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2 tRNA_edit

Protein Analysis

316

Amino Acids

34.24

Weight (kDa)

8.19

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_edit PF04073 24 - 151 2e-26 Aminoacyl-tRNA editing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 509
AccII CGCG 1 cut(s) 915
AciI CCGC 3 cut(s) 31, 183, 913
AclWI GGATC 2 cut(s) 369, 566
AcsI RAATTY 2 cut(s) 139, 368
AcuI CTGAAG 3 cut(s) 29, 272, 285
AfaI GTAC 1 cut(s) 649
AfiI CCNNNNNNNGG 2 cut(s) 37, 509
AflII CTTAAG 1 cut(s) 455
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 3 cut(s) 151, 753, 886
AjnI CCWGG 1 cut(s) 693
AluBI AGCT 4 cut(s) 43, 590, 814, 854
AluI AGCT 4 cut(s) 43, 590, 814, 854
Alw21I GWGCWC 1 cut(s) 662
Alw26I GTCTC 2 cut(s) 352, 446
AlwI GGATC 2 cut(s) 369, 566
AlwNI CAGNNNCTG 1 cut(s) 623
ApeKI GCWGC 2 cut(s) 587, 854
ApoI RAATTY 2 cut(s) 139, 368
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
Asp700I GAANNNNTTC 1 cut(s) 285
AspLEI GCGC 1 cut(s) 917
AspS9I GGNCC 2 cut(s) 292, 517
AsuC2I CCSGG 1 cut(s) 578
AsuHPI GGTGA 1 cut(s) 337
AvaII GGWCC 2 cut(s) 292, 517
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
Bbv12I GWGCWC 1 cut(s) 662
BbvI GCAGC 2 cut(s) 599, 841
BccI CCATC 2 cut(s) 511, 679
BcgI CGANNNNNNTGC 2 cut(s) 576, 610
BciT130I CCWGG 1 cut(s) 695
BclI TGATCA 1 cut(s) 67
BcnI CCSGG 1 cut(s) 578
BcoDI GTCTC 2 cut(s) 352, 446
BfaI CTAG 2 cut(s) 552, 764
BfmI CTRYAG 2 cut(s) 615, 855
BfrI CTTAAG 1 cut(s) 455
BglII AGATCT 1 cut(s) 205
BisI GCNGC 2 cut(s) 588, 855
BlsI GCNGC 2 cut(s) 589, 856
Bme1390I CCNGG 2 cut(s) 578, 695
Bme18I GGWCC 2 cut(s) 292, 517
BmgT120I GGNCC 2 cut(s) 292, 517
BmiI GGNNCC 2 cut(s) 261, 294
BmrFI CCNGG 2 cut(s) 578, 695
BmrI ACTGGG 2 cut(s) 55, 284
BmsI GCATC 2 cut(s) 545, 912
BmuI ACTGGG 2 cut(s) 55, 284
BplI GAGNNNNNCTC 4 cut(s) 114, 146, 244, 276
Bpu10I CCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 578
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 12, 576, 693
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 509
Bse1I ACTGG 4 cut(s) 61, 279, 327, 750
Bse3DI GCAATG 1 cut(s) 349
BseBI CCWGG 1 cut(s) 695
BseDI CCNNGG 3 cut(s) 12, 576, 693
BseGI GGATG 4 cut(s) 70, 671, 927, 931
BseLI CCNNNNNNNGG 2 cut(s) 37, 509
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 2 cut(s) 110, 145
BseNI ACTGG 4 cut(s) 61, 279, 327, 750
BseRI GAGGAG 1 cut(s) 800
BseXI GCAGC 2 cut(s) 599, 841
BseYI CCCAGC 1 cut(s) 917
Bsh1236I CGCG 1 cut(s) 915
BsiHKAI GWGCWC 1 cut(s) 662
BsiSI CCGG 1 cut(s) 578
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 2 cut(s) 37, 509
BsmAI GTCTC 2 cut(s) 352, 446
BsmFI GGGAC 1 cut(s) 278
Bso31I GGTCTC 1 cut(s) 446
Bsp1286I GDGCHC 1 cut(s) 662
Bsp143I GATC 5 cut(s) 67, 205, 361, 529, 571
BspACI CCGC 3 cut(s) 31, 183, 913
BspCNI CTCAG 2 cut(s) 109, 144
BspFNI CGCG 1 cut(s) 915
BspLI GGNNCC 2 cut(s) 261, 294
BspMAI CTGCAG 1 cut(s) 859
BspPI GGATC 2 cut(s) 369, 566
BspQI GCTCTTC 1 cut(s) 804
BspTI CTTAAG 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 349
BsrI ACTGG 4 cut(s) 61, 279, 327, 750
BssECI CCNNGG 3 cut(s) 12, 576, 693
BssMI GATC 5 cut(s) 67, 205, 361, 529, 571
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 695
Bst4CI ACNGT 5 cut(s) 21, 88, 619, 652, 929
Bst6I CTCTTC 2 cut(s) 155, 804
BstAFI CTTAAG 1 cut(s) 455
BstC8I GCNNGC 3 cut(s) 27, 31, 340
BstDEI CTNAG 4 cut(s) 96, 131, 666, 945
BstF5I GGATG 4 cut(s) 70, 671, 927, 931
BstFNI CGCG 1 cut(s) 915
BstHHI GCGC 1 cut(s) 917
BstKTI GATC 5 cut(s) 70, 208, 364, 532, 574
BstMAI GTCTC 2 cut(s) 352, 446
BstMBI GATC 5 cut(s) 67, 205, 361, 529, 571
BstNI CCWGG 1 cut(s) 695
BstNSI RCATGY 2 cut(s) 342, 418
BstSCI CCNGG 2 cut(s) 576, 693
BstSFI CTRYAG 2 cut(s) 615, 855
BstUI CGCG 1 cut(s) 915
BstV1I GCAGC 2 cut(s) 599, 841
BstX2I RGATCY 2 cut(s) 205, 571
BstYI RGATCY 2 cut(s) 205, 571
BtsCI GGATG 4 cut(s) 70, 671, 927, 931
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 5 cut(s) 272, 320, 657, 891, 925
Cac8I GCNNGC 3 cut(s) 27, 31, 340
CaiI CAGNNNCTG 1 cut(s) 623
CfoI GCGC 1 cut(s) 917
Cfr13I GGNCC 2 cut(s) 292, 517
Csp6I GTAC 1 cut(s) 648
CviAII CATG 3 cut(s) 339, 415, 803
CviQI GTAC 1 cut(s) 648
DdeI CTNAG 4 cut(s) 96, 131, 666, 945
DpnI GATC 5 cut(s) 69, 207, 363, 531, 573
DpnII GATC 5 cut(s) 67, 205, 361, 529, 571
DraI TTTAAA 1 cut(s) 373
Eam1104I CTCTTC 2 cut(s) 155, 804
EarI CTCTTC 2 cut(s) 155, 804
Eco130I CCWWGG 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 446
Eco47I GGWCC 2 cut(s) 292, 517
Eco57I CTGAAG 3 cut(s) 29, 272, 285
EcoO109I RGGNCCY 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 693
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 3 cut(s) 342, 418, 806
FaqI GGGAC 1 cut(s) 278
FatI CATG 3 cut(s) 338, 414, 802
FauI CCCGC 1 cut(s) 38
FauNDI CATATG 1 cut(s) 481
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 588, 855
FokI GGATG 4 cut(s) 57, 658, 918, 934
Fsp4HI GCNGC 2 cut(s) 588, 855
FspBI CTAG 2 cut(s) 552, 764
GlaI GCGC 1 cut(s) 916
GluI GCNGC 2 cut(s) 588, 855
GsaI CCCAGC 1 cut(s) 921
HapII CCGG 1 cut(s) 578
HhaI GCGC 1 cut(s) 917
Hin1II CATG 3 cut(s) 342, 418, 806
Hin6I GCGC 1 cut(s) 915
HinP1I GCGC 1 cut(s) 915
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 4 cut(s) 129, 332, 749, 909
HpaII CCGG 1 cut(s) 578
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 4 cut(s) 128, 328, 487, 639
Hpy188I TCNGA 2 cut(s) 48, 210
Hpy188III TCNNGA 4 cut(s) 148, 263, 380, 527
Hpy8I GTNNAC 4 cut(s) 128, 328, 487, 639
HpyAV CCTTC 3 cut(s) 145, 508, 899
HpyCH4III ACNGT 5 cut(s) 21, 88, 619, 652, 929
HpyCH4V TGCA 7 cut(s) 338, 342, 536, 857, 865, 896, 925
HpyF3I CTNAG 4 cut(s) 96, 131, 666, 945
Hsp92II CATG 3 cut(s) 342, 418, 806
HspAI GCGC 1 cut(s) 915
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 5 cut(s) 67, 205, 361, 529, 571
LguI GCTCTTC 1 cut(s) 804
LmnI GCTCC 2 cut(s) 40, 265
Lsp1109I GCAGC 2 cut(s) 599, 841
LweI GCATC 2 cut(s) 545, 912
MaeI CTAG 2 cut(s) 552, 764
MaeIII GTNAC 1 cut(s) 307
MalI GATC 5 cut(s) 69, 207, 363, 531, 573
MboI GATC 5 cut(s) 67, 205, 361, 529, 571
MboII GAAGA 5 cut(s) 172, 278, 385, 750, 821
MflI RGATCY 2 cut(s) 205, 571
MhlI GDGCHC 1 cut(s) 662
MluCI AATT 7 cut(s) 139, 368, 462, 821, 837, 848, 860
MlyI GAGTC 1 cut(s) 123
MmeI TCCRAC 3 cut(s) 91, 339, 703
MnlI CCTC 8 cut(s) 85, 116, 219, 487, 487, 534, 604, 778
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 6 cut(s) 35, 372, 456, 465, 795, 840
MslI CAYNNNNRTG 1 cut(s) 875
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 1 cut(s) 578
MspR9I CCNGG 2 cut(s) 578, 695
MvaI CCWGG 1 cut(s) 695
MvnI CGCG 1 cut(s) 915
NciI CCSGG 1 cut(s) 578
NdeI CATATG 1 cut(s) 481
NdeII GATC 5 cut(s) 67, 205, 361, 529, 571
NlaIII CATG 3 cut(s) 342, 418, 806
NlaIV GGNNCC 2 cut(s) 261, 294
NspI RCATGY 2 cut(s) 342, 418
PaeI GCATGC 1 cut(s) 342
PciI ACATGT 1 cut(s) 414
PciSI GCTCTTC 1 cut(s) 804
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 3 cut(s) 332, 749, 909
PflMI CCANNNNNTGG 1 cut(s) 509
PkrI GCNGC 2 cut(s) 589, 856
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
PpuMI RGGWCCY 1 cut(s) 292
PscI ACATGT 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 693
PspFI CCCAGC 1 cut(s) 917
PspGI CCWGG 1 cut(s) 693
PspN4I GGNNCC 2 cut(s) 261, 294
PspPI GGNCC 2 cut(s) 292, 517
PspPPI RGGWCCY 1 cut(s) 292
PstI CTGCAG 1 cut(s) 859
PstNI CAGNNNCTG 1 cut(s) 623
PsuI RGATCY 2 cut(s) 205, 571
RsaI GTAC 1 cut(s) 649
RsaNI GTAC 1 cut(s) 648
RseI CAYNNNNRTG 1 cut(s) 875
SapI GCTCTTC 1 cut(s) 804
SaqAI TTAA 6 cut(s) 35, 372, 456, 465, 795, 840
SatI GCNGC 2 cut(s) 588, 855
Sau3AI GATC 5 cut(s) 67, 205, 361, 529, 571
Sau96I GGNCC 2 cut(s) 292, 517
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 2 cut(s) 578, 695
SduI GDGCHC 1 cut(s) 662
SfaNI GCATC 2 cut(s) 545, 912
SfcI CTRYAG 2 cut(s) 615, 855
SinI GGWCC 2 cut(s) 292, 517
SmiMI CAYNNNNRTG 1 cut(s) 875
SmlI CTYRAG 2 cut(s) 250, 455
SmoI CTYRAG 2 cut(s) 250, 455
SphI GCATGC 1 cut(s) 342
Sse9I AATT 7 cut(s) 139, 368, 462, 821, 837, 848, 860
SsiI CCGC 3 cut(s) 31, 183, 913
SspI AATATT 1 cut(s) 793
SspMI CTAG 2 cut(s) 552, 764
StyD4I CCNGG 2 cut(s) 576, 693
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 5 cut(s) 21, 88, 619, 652, 929
TaqI TCGA 2 cut(s) 407, 596
TasI AATT 7 cut(s) 139, 368, 462, 821, 837, 848, 860
TatI WGTACW 1 cut(s) 647
TfiI GAWTC 3 cut(s) 332, 749, 909
Tru1I TTAA 6 cut(s) 35, 372, 456, 465, 795, 840
Tru9I TTAA 6 cut(s) 35, 372, 456, 465, 795, 840
TscAI CASTG 5 cut(s) 279, 327, 657, 898, 932
TseI GCWGC 2 cut(s) 587, 854
TspGWI ACGGA 3 cut(s) 537, 547, 797
TspRI CASTG 5 cut(s) 279, 327, 657, 898, 932
Van91I CCANNNNNTGG 1 cut(s) 509
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 2 cut(s) 292, 517
XapI RAATTY 2 cut(s) 139, 368
XceI RCATGY 2 cut(s) 342, 418
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 2 cut(s) 552, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.