pycom15g32110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012979
Physical Location & Seq
Reverse (-)
30980907 .. 30981770
864 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 804 bp
ATGTTAGGAAGATTAAATTTACAAATTAAATTATTCTCCTCTCTCTCTCTCTCTCTCTCTCTCAAGCTTCAGTTTCAGTTTCGTTCAGAAGCTAAACAGTGGGCTCCAATGACAAGTGAATACAACCGCTTCCATCACCGCCACCGCCACCACCACAACCACCATCAGAATCTGCATATGCATAATCATCAGACAAGCACATTCTTGCCCATGTTATGTTCGAGACCATCCATCAAAGATGTGAGCCTTCCAAAGTCTGCATCCGTAAAAGATGATCCTTTGTCCCCAAGAATCAGTTGCACGGGCCAAGTGAAAAGAAGCAACAAAGTCAATGGCTTTCCAACCCCTCTCACCACTCACAGACTACTCACCCTCTCCTCCAACCCTAATTCCAAGTACAATATTATCAGCAGCCCCAACAACCACCTCAAGTACTCCAAGCTCAAGAAACTCTTCTCTGGCAAAAATCTAAACAACCCTAATGCCGCCGCCGCTGCTACCACCACAACAGCCACTACAAACACCACCACAAGATGTCGTAGAAGGCAAGTGATTGTGAATAGTAACAATGGTGGAAGTGGGCCCCGGATTAGTAACGGTCATGATTGTGTTGCGAATATTAACCTAGTGGATTTGGATCCTCCTCTGCCTGTGATCAAGAGGGTGCACAAGAAGCCTGCTGAAGAACAAGAAGAAGAGGTGAACAGTCTTTGGAAGAGGAGATCTGGTGGGGTTGAATTGAAAGGTTTGCAGCTTAAACAGATTCACCATCCTAGGCATCTAAATCAACCCATTACTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

30.15

Weight (kDa)

10.6

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36940 AT1G36940
fragaria_vesca FvH4_5g38830
prunus_persica Prupe.1G506300_v2.0.a1
pyrus_communis pycom08g14800 pycom08g14810 pycom15g32110
rosa_chinensis RchiOBHm_Chr7g0240831
rosa_multiflora Rmu_sc0002313.1_g000024 Rmu_sc0004821.1_g000015
rosa_roxburghii Rroxscaffold_3G00219590
rosa_rugosa Rorug07G0339400
rosa_samantha Rh7AG493700 Rh7BG465600 Rh7CG512100 Rh7DG478800
rosa_wichuraiana Rw0G010720 Rw7G041770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 127, 139, 145, 486, 489, 492
AclWI GGATC 3 cut(s) 269, 632, 645
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 2 cut(s) 53, 702
AfaI GTAC 2 cut(s) 398, 434
AgsI TTSAA 2 cut(s) 737, 742
AluBI AGCT 4 cut(s) 67, 92, 442, 754
AluI AGCT 4 cut(s) 67, 92, 442, 754
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 1 cut(s) 217
Alw44I GTGCAC 1 cut(s) 665
AlwI GGATC 3 cut(s) 269, 632, 645
AlwNI CAGNNNCTG 1 cut(s) 172
AoxI GGCC 2 cut(s) 304, 581
ApaI GGGCCC 1 cut(s) 585
ApaLI GTGCAC 1 cut(s) 665
ApeKI GCWGC 3 cut(s) 411, 494, 751
ApoI RAATTY 1 cut(s) 16
Asp700I GAANNNNTTC 1 cut(s) 452
AspA2I CCTAGG 1 cut(s) 773
AspS9I GGNCC 3 cut(s) 304, 581, 582
AsuC2I CCSGG 1 cut(s) 586
AsuHPI GGTGA 5 cut(s) 128, 343, 361, 712, 758
AvrII CCTAGG 1 cut(s) 773
BaeGI GKGCMC 2 cut(s) 585, 669
BamHI GGATCC 1 cut(s) 637
BanII GRGCYC 2 cut(s) 106, 585
Bbv12I GWGCWC 1 cut(s) 669
BbvI GCAGC 3 cut(s) 423, 481, 763
BccI CCATC 5 cut(s) 141, 171, 235, 239, 777
BclI TGATCA 1 cut(s) 654
BcnI CCSGG 1 cut(s) 586
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 2 cut(s) 626, 774
BglII AGATCT 1 cut(s) 722
BisI GCNGC 6 cut(s) 412, 486, 489, 492, 495, 752
BlnI CCTAGG 1 cut(s) 773
BlsI GCNGC 6 cut(s) 413, 487, 490, 493, 496, 753
BmcAI AGTACT 1 cut(s) 434
Bme1390I CCNGG 1 cut(s) 586
BmgT120I GGNCC 3 cut(s) 304, 581, 582
BmiI GGNNCC 4 cut(s) 105, 583, 584, 639
BmrFI CCNGG 1 cut(s) 586
BmsI GCATC 2 cut(s) 269, 787
BpuEI CTTGAG 3 cut(s) 47, 413, 428
BpuMI CCSGG 1 cut(s) 586
BsaBI GATNNNNATC 1 cut(s) 636
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 584, 773
BsaXI ACNNNNNCTCC 2 cut(s) 712, 742
Bse8I GATNNNNATC 1 cut(s) 636
BseDI CCNNGG 2 cut(s) 584, 773
BseGI GGATG 3 cut(s) 227, 260, 769
BseJI GATNNNNATC 1 cut(s) 636
BseRI GAGGAG 4 cut(s) 28, 367, 633, 733
BseSI GKGCMC 2 cut(s) 585, 669
BseXI GCAGC 3 cut(s) 423, 481, 763
BshFI GGCC 2 cut(s) 306, 583
BsiHKAI GWGCWC 1 cut(s) 669
BsiSI CCGG 1 cut(s) 586
BslFI GGGAC 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 2 cut(s) 306, 583
Bso31I GGTCTC 1 cut(s) 217
Bsp120I GGGCCC 1 cut(s) 581
Bsp1286I GDGCHC 3 cut(s) 106, 585, 669
Bsp143I GATC 4 cut(s) 274, 637, 654, 722
BspACI CCGC 6 cut(s) 127, 139, 145, 486, 489, 492
BspANI GGCC 2 cut(s) 306, 583
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 4 cut(s) 105, 583, 584, 639
BspPI GGATC 3 cut(s) 269, 632, 645
BspTNI GGTCTC 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 584, 773
BssMI GATC 4 cut(s) 274, 637, 654, 722
BssT1I CCWWGG 1 cut(s) 773
Bst4CI ACNGT 4 cut(s) 99, 599, 707, 799
Bst6I CTCTTC 3 cut(s) 458, 690, 710
BstC8I GCNNGC 1 cut(s) 678
BstF5I GGATG 3 cut(s) 227, 260, 769
BstKTI GATC 4 cut(s) 277, 640, 657, 725
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 4 cut(s) 274, 637, 654, 722
BstMWI GCNNNNNNNGC 3 cut(s) 491, 494, 673
BstSCI CCNGG 1 cut(s) 584
BstSLI GKGCMC 2 cut(s) 585, 669
BstV1I GCAGC 3 cut(s) 423, 481, 763
BstX2I RGATCY 2 cut(s) 637, 722
BstYI RGATCY 2 cut(s) 637, 722
BsuRI GGCC 2 cut(s) 306, 583
BtsCI GGATG 3 cut(s) 227, 260, 769
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 678
CaiI CAGNNNCTG 1 cut(s) 172
CciI TCATGA 1 cut(s) 601
Cfr13I GGNCC 3 cut(s) 304, 581, 582
Csp6I GTAC 2 cut(s) 397, 433
CviAII CATG 2 cut(s) 211, 602
CviQI GTAC 2 cut(s) 397, 433
DpnI GATC 4 cut(s) 276, 639, 656, 724
DpnII GATC 4 cut(s) 274, 637, 654, 722
Eam1104I CTCTTC 3 cut(s) 458, 690, 710
EarI CTCTTC 3 cut(s) 458, 690, 710
Eco130I CCWWGG 1 cut(s) 773
Eco24I GRGCYC 2 cut(s) 106, 585
Eco31I GGTCTC 1 cut(s) 217
Eco57I CTGAAG 2 cut(s) 53, 702
EcoO109I RGGNCCY 1 cut(s) 582
EcoT14I CCWWGG 1 cut(s) 773
EcoT22I ATGCAT 1 cut(s) 183
EcoT38I GRGCYC 2 cut(s) 106, 585
ErhI CCWWGG 1 cut(s) 773
FaeI CATG 2 cut(s) 214, 605
FaiI YATR 6 cut(s) 177, 179, 183, 212, 217, 603
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 1 cut(s) 268
FatI CATG 2 cut(s) 210, 601
FauNDI CATATG 1 cut(s) 177
FbaI TGATCA 1 cut(s) 654
Fnu4HI GCNGC 6 cut(s) 412, 486, 489, 492, 495, 752
FokI GGATG 3 cut(s) 214, 247, 756
FriOI GRGCYC 2 cut(s) 106, 585
Fsp4HI GCNGC 6 cut(s) 412, 486, 489, 492, 495, 752
FspBI CTAG 2 cut(s) 626, 774
GluI GCNGC 6 cut(s) 412, 486, 489, 492, 495, 752
HaeIII GGCC 2 cut(s) 306, 583
HapII CCGG 1 cut(s) 586
Hin1II CATG 2 cut(s) 214, 605
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 3 cut(s) 169, 291, 763
HpaII CCGG 1 cut(s) 586
HphI GGTGA 5 cut(s) 128, 343, 361, 712, 758
Hpy166II GTNNAC 2 cut(s) 667, 703
Hpy188I TCNGA 3 cut(s) 88, 168, 192
Hpy188III TCNNGA 4 cut(s) 222, 445, 602, 658
Hpy8I GTNNAC 2 cut(s) 667, 703
HpyAV CCTTC 2 cut(s) 257, 537
HpyCH4III ACNGT 4 cut(s) 99, 599, 707, 799
HpyCH4V TGCA 6 cut(s) 175, 181, 260, 300, 667, 751
HpyF10VI GCNNNNNNNGC 3 cut(s) 491, 494, 673
Hsp92II CATG 2 cut(s) 214, 605
Ksp22I TGATCA 1 cut(s) 654
Kzo9I GATC 4 cut(s) 274, 637, 654, 722
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 444, 599, 663, 690, 711
Lsp1109I GCAGC 3 cut(s) 423, 481, 763
LweI GCATC 2 cut(s) 269, 787
MaeI CTAG 2 cut(s) 626, 774
MaeIII GTNAC 2 cut(s) 563, 593
MalI GATC 4 cut(s) 276, 639, 656, 724
MboI GATC 4 cut(s) 274, 637, 654, 722
MboII GAAGA 6 cut(s) 21, 445, 695, 704, 707, 727
MflI RGATCY 2 cut(s) 637, 722
MhlI GDGCHC 3 cut(s) 106, 585, 669
MluCI AATT 5 cut(s) 16, 24, 29, 388, 737
MmeI TCCRAC 2 cut(s) 365, 405
Mph1103I ATGCAT 1 cut(s) 183
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 5 cut(s) 14, 27, 621, 756, 802
MslI CAYNNNNRTG 1 cut(s) 606
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 1 cut(s) 586
MspR9I CCNGG 1 cut(s) 586
MwoI GCNNNNNNNGC 3 cut(s) 491, 494, 673
NciI CCSGG 1 cut(s) 586
NdeI CATATG 1 cut(s) 177
NdeII GATC 4 cut(s) 274, 637, 654, 722
NlaIII CATG 2 cut(s) 214, 605
NlaIV GGNNCC 4 cut(s) 105, 583, 584, 639
NsiI ATGCAT 1 cut(s) 183
PagI TCATGA 1 cut(s) 601
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 3 cut(s) 169, 291, 763
PkrI GCNGC 6 cut(s) 413, 487, 490, 493, 496, 753
PspN4I GGNNCC 4 cut(s) 105, 583, 584, 639
PspOMI GGGCCC 1 cut(s) 581
PspPI GGNCC 3 cut(s) 304, 581, 582
PstNI CAGNNNCTG 1 cut(s) 172
PsuI RGATCY 2 cut(s) 637, 722
RsaI GTAC 2 cut(s) 398, 434
RsaNI GTAC 2 cut(s) 397, 433
RseI CAYNNNNRTG 1 cut(s) 606
SaqAI TTAA 5 cut(s) 14, 27, 621, 756, 802
SatI GCNGC 6 cut(s) 412, 486, 489, 492, 495, 752
Sau3AI GATC 4 cut(s) 274, 637, 654, 722
Sau96I GGNCC 3 cut(s) 304, 581, 582
ScaI AGTACT 1 cut(s) 434
ScrFI CCNGG 1 cut(s) 586
SduI GDGCHC 3 cut(s) 106, 585, 669
SetI ASST 8 cut(s) 69, 94, 429, 444, 627, 702, 748, 756
SfaNI GCATC 2 cut(s) 269, 787
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 3 cut(s) 62, 428, 443
SmoI CTYRAG 3 cut(s) 62, 428, 443
Sse9I AATT 5 cut(s) 16, 24, 29, 388, 737
SsiI CCGC 6 cut(s) 127, 139, 145, 486, 489, 492
SspI AATATT 2 cut(s) 403, 619
SspMI CTAG 2 cut(s) 626, 774
StyD4I CCNGG 1 cut(s) 584
StyI CCWWGG 1 cut(s) 773
TaaI ACNGT 4 cut(s) 99, 599, 707, 799
TaqI TCGA 1 cut(s) 221
TasI AATT 5 cut(s) 16, 24, 29, 388, 737
TatI WGTACW 2 cut(s) 396, 432
TauI GCSGC 3 cut(s) 488, 491, 494
TfiI GAWTC 3 cut(s) 169, 291, 763
Tru1I TTAA 5 cut(s) 14, 27, 621, 756, 802
Tru9I TTAA 5 cut(s) 14, 27, 621, 756, 802
TscAI CASTG 1 cut(s) 104
TseI GCWGC 3 cut(s) 411, 494, 751
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 1 cut(s) 104
VneI GTGCAC 1 cut(s) 665
XapI RAATTY 1 cut(s) 16
XmaJI CCTAGG 1 cut(s) 773
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 2 cut(s) 626, 774
ZrmI AGTACT 1 cut(s) 434
Zsp2I ATGCAT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.