Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002669

Physical Location & Seq

Genomic Coordinates Forward (+)

32917199 .. 32919003

Gene Structure 1805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g33480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGTTTGGGCGGGACGACCTTGCAAACCCTGAAGCTCGCCCCAATTCCTCCACCTTCCTTTTCTTCTTCTTTCCGCTCCGTTTTCAAACCGTTTTCCCAAACCTTTCTCTGCCGCCATAGCCGCAGACAAAGACTTCCACTTGCTCCGCACTTCTTCGTCAGAGGCCTTTCAGCCCCGGCCGAACAGGCAACTGCCACCGCAGCCCCAAAAGAAACAAGCCCAGATGAAAAGGGTGTGAAGCAGCAATGGAAAGCAGCGATAGACTTCAAGTGGATAAGGGACAACAAGGACGCGGTTGCGGCCAACATAGAGAAGAGGAACTCCAATGCCAATTTGGATCTTGTGCTTGAGCTCTACCACAAAATGCTCAATCTTCAAAAGGAAGTTGAACGGCTTCGCGGGGAAAGGAATGTGGTTGCAAACAAGATGAAAGGAAAGTTGGAGCCATCTGAGCGTCAAAAACTTATAGATGAAGGAAAGAATTTGAAGGAAGGGCTTCTTTCTTTGGAAGAAGACCTGCTTAAACTTATTGATGAGCTTCAGCAGGAAGCACAACGTATACCAAATATGACTCATCCTGATGTCCCGATAGGCGGAGAGGATTTTTCAACCATAAGAAAGATGCTTTCCTGTCAAGGATCATCTCTTCCTCAACTTGGAAAGGAACTAGATCTTTTTGATTTTGACGCTGCTTCAGAGGTCAGTGGCTCAAAGTTTTACTATCTGAAGAATGAAGCAGTACTCCTAGAGATGGCCCTTATTAACTGGACGCTCGTGGAAGTAATGAAAAGTGGCTTCACACCTTTAACAACCCCAGAAATTGTATGTGATAGATCCTCCATTGTTGAAAAATGTGGTTTCCAACCCCGAGGAGCAAATACCCAGGTTTATTCTATTGAGGATAGTGATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

306

Amino Acids

34.22

Weight (kDa)

6.92

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11870 AT1G11870 AT1G11870 AT1G11870 AT1G11870 AT1G11870
fragaria_vesca	FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670
malus_domestica	MD08G1187900.v1.1 MD15G1373800.v1.1
prunus_persica	Prupe.1G522400_v2.0.a1 Prupe.1G522400_v2.0.a1
pyrus_communis	pycom08g16120 pycom15g33480 pycom15g33490
rosa_chinensis	RchiOBHm_Chr7g0242571
rosa_laevigata	RLG00000000891
rosa_multiflora	Rmu_sc0000429.1_g000097
rosa_roxburghii	Rroxscaffold_3G00222620
rosa_rugosa	Rorug07G0315500 Rorug07G0315600 Rorug07G0315700 Rorug07G0315800
rosa_samantha	Rh7AG470900 Rh7BG441200 Rh7CG487800 Rh7DG456400
rosa_wichuraiana	Rw0G005480 Rw7G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	528
AccBSI	CCGCTC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	562
AccII	CGCG	2 cut(s)	296, 402
AclWI	GGATC	3 cut(s)	348, 649, 831
AcoI	YGGCCR	2 cut(s)	180, 303
AcsI	RAATTY	1 cut(s)	484
AcuI	CTGAAG	4 cut(s)	53, 527, 681, 749
AfaI	GTAC	1 cut(s)	744
AfiI	CCNNNNNNNGG	3 cut(s)	596, 659, 754
AgsI	TTSAA	7 cut(s)	88, 271, 380, 392, 490, 612, 851
AjnI	CCWGG	1 cut(s)	885
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	3 cut(s)	37, 355, 541
AluI	AGCT	3 cut(s)	37, 355, 541
Alw21I	GWGCWC	1 cut(s)	357
AlwI	GGATC	3 cut(s)	348, 649, 831
Ama87I	CYCGRG	1 cut(s)	870
AoxI	GGCC	4 cut(s)	166, 180, 303, 756
ApeKI	GCWGC	4 cut(s)	203, 244, 257, 692
ApoI	RAATTY	1 cut(s)	484
Asp700I	GAANNNNTTC	2 cut(s)	396, 498
AspS9I	GGNCC	1 cut(s)	757
AsuC2I	CCSGG	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	870
BanII	GRGCYC	1 cut(s)	357
BauI	CACGAG	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	4 cut(s)	215, 256, 269, 679
BccI	CCATC	2 cut(s)	457, 748
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	887
BcnI	CCSGG	1 cut(s)	179
BfaI	CTAG	2 cut(s)	671, 749
BfuAI	ACCTGC	1 cut(s)	528
BglI	GCCNNNNNGGC	1 cut(s)	188
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	7 cut(s)	115, 124, 204, 245, 258, 303, 693
BlsI	GCNGC	7 cut(s)	116, 125, 205, 246, 259, 304, 694
BmcAI	AGTACT	1 cut(s)	744
Bme1390I	CCNGG	2 cut(s)	179, 887
BmeT110I	CYCGRG	1 cut(s)	870
BmgT120I	GGNCC	1 cut(s)	757
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	179, 887
BmsI	GCATC	1 cut(s)	615
BpiI	GAAGAC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	909
BsaJI	CCNNGG	3 cut(s)	177, 871, 885
Bsc4I	CCNNNNNNNGG	3 cut(s)	596, 659, 754
Bse1I	ACTGG	1 cut(s)	773
Bse3DI	GCAATG	1 cut(s)	254
Bse8I	GATNNNNATC	1 cut(s)	909
BseBI	CCWGG	1 cut(s)	887
BseDI	CCNNGG	3 cut(s)	177, 871, 885
BseGI	GGATG	1 cut(s)	577
BseJI	GATNNNNATC	1 cut(s)	909
BseLI	CCNNNNNNNGG	3 cut(s)	596, 659, 754
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	773
BseRI	GAGGAG	1 cut(s)	888
BseX3I	CGGCCG	1 cut(s)	180
BseXI	GCAGC	4 cut(s)	215, 256, 269, 679
Bsh1236I	CGCG	2 cut(s)	296, 402
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	4 cut(s)	168, 182, 305, 758
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	870
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	3 cut(s)	28, 296, 572
BslI	CCNNNNNNNGG	3 cut(s)	596, 659, 754
BsmFI	GGGAC	3 cut(s)	28, 296, 572
BsnI	GGCC	4 cut(s)	168, 182, 305, 758
BsoBI	CYCGRG	1 cut(s)	870
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	5 cut(s)	340, 641, 673, 836, 910
BspANI	GGCC	4 cut(s)	168, 182, 305, 758
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	2 cut(s)	296, 402
BspLI	GGNNCC	1 cut(s)	447
BspMI	ACCTGC	1 cut(s)	528
BspPI	GGATC	3 cut(s)	348, 649, 831
BsrBI	CCGCTC	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	773
BssECI	CCNNGG	3 cut(s)	177, 871, 885
BssMI	GATC	5 cut(s)	340, 641, 673, 836, 910
BssNAI	GTATAC	1 cut(s)	563
BssSI	CACGAG	1 cut(s)	776
Bst1107I	GTATAC	1 cut(s)	563
Bst2BI	CACGAG	1 cut(s)	776
Bst2UI	CCWGG	1 cut(s)	887
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	2 cut(s)	311, 654
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	577
BstFNI	CGCG	2 cut(s)	296, 402
BstKTI	GATC	5 cut(s)	343, 644, 676, 839, 913
BstMBI	GATC	5 cut(s)	340, 641, 673, 836, 910
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	6 cut(s)	120, 123, 188, 203, 302, 454
BstNI	CCWGG	1 cut(s)	887
BstSCI	CCNGG	2 cut(s)	177, 885
BstUI	CGCG	2 cut(s)	296, 402
BstV1I	GCAGC	4 cut(s)	215, 256, 269, 679
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	3 cut(s)	340, 673, 836
BstYI	RGATCY	3 cut(s)	340, 673, 836
BstZ17I	GTATAC	1 cut(s)	563
BstZI	CGGCCG	1 cut(s)	180
BsuRI	GGCC	4 cut(s)	168, 182, 305, 758
BtsCI	GGATG	1 cut(s)	577
BtsIMutI	CAGTG	1 cut(s)	712
BveI	ACCTGC	1 cut(s)	528
Cac8I	GCNNGC	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	757
CseI	GACGC	4 cut(s)	302, 446, 698, 781
Csp6I	GTAC	1 cut(s)	743
CviQI	GTAC	1 cut(s)	743
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	5 cut(s)	342, 643, 675, 838, 912
DpnII	GATC	5 cut(s)	340, 641, 673, 836, 910
EaeI	YGGCCR	2 cut(s)	180, 303
EagI	CGGCCG	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	311, 654
EarI	CTCTTC	2 cut(s)	311, 654
EciI	GGCGGA	1 cut(s)	612
Ecl136II	GAGCTC	1 cut(s)	355
EclXI	CGGCCG	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	357
Eco52I	CGGCCG	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	4 cut(s)	53, 527, 681, 749
Eco88I	CYCGRG	1 cut(s)	870
EcoICRI	GAGCTC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	885
EcoT38I	GRGCYC	1 cut(s)	357
FaiI	YATR	7 cut(s)	120, 311, 470, 563, 572, 617, 829
FalI	AAGNNNNNCTT	4 cut(s)	486, 518, 507, 539
FaqI	GGGAC	3 cut(s)	28, 296, 572
FauI	CCCGC	2 cut(s)	5, 395
FblI	GTMKAC	1 cut(s)	562
Fnu4HI	GCNGC	7 cut(s)	115, 124, 204, 245, 258, 303, 693
FokI	GGATG	1 cut(s)	564
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	7 cut(s)	115, 124, 204, 245, 258, 303, 693
FspBI	CTAG	2 cut(s)	671, 749
GluI	GCNGC	7 cut(s)	115, 124, 204, 245, 258, 303, 693
HaeIII	GGCC	4 cut(s)	168, 182, 305, 758
HapII	CCGG	1 cut(s)	179
HgaI	GACGC	4 cut(s)	302, 446, 698, 781
HinfI	GANTC	1 cut(s)	574
HpaII	CCGG	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188I	TCNGA	4 cut(s)	164, 454, 700, 729
Hpy188III	TCNNGA	2 cut(s)	581, 589
Hpy8I	GTNNAC	1 cut(s)	563
HpyAV	CCTTC	4 cut(s)	66, 470, 484, 488
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	2 cut(s)	25, 422
HpyF10VI	GCNNNNNNNGC	6 cut(s)	120, 123, 188, 203, 302, 454
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	1 cut(s)	559
Kzo9I	GATC	5 cut(s)	340, 641, 673, 836, 910
LmnI	GCTCC	4 cut(s)	83, 151, 445, 875
Lsp1109I	GCAGC	4 cut(s)	215, 256, 269, 679
LweI	GCATC	1 cut(s)	615
MaeI	CTAG	2 cut(s)	671, 749
MaeII	ACGT	1 cut(s)	559
MalI	GATC	5 cut(s)	342, 643, 675, 838, 912
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	5 cut(s)	340, 641, 673, 836, 910
MboII	GAAGA	9 cut(s)	57, 60, 148, 328, 368, 524, 527, 641, 742
MflI	RGATCY	3 cut(s)	340, 673, 836
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	4 cut(s)	45, 334, 484, 822
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	2 cut(s)	423, 889
MnlI	CCTC	9 cut(s)	60, 158, 312, 595, 663, 694, 850, 866, 895
MroXI	GAANNNNTTC	2 cut(s)	396, 498
MseI	TTAA	3 cut(s)	525, 765, 809
MslI	CAYNNNNRTG	1 cut(s)	582
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	179, 887
MvaI	CCWGG	1 cut(s)	887
MvnI	CGCG	2 cut(s)	296, 402
MwoI	GCNNNNNNNGC	6 cut(s)	120, 123, 188, 203, 302, 454
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	5 cut(s)	340, 641, 673, 836, 910
NlaIV	GGNNCC	1 cut(s)	447
PceI	AGGCCT	1 cut(s)	168
PdmI	GAANNNNTTC	2 cut(s)	396, 498
PkrI	GCNGC	7 cut(s)	116, 125, 205, 246, 259, 304, 694
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Psp124BI	GAGCTC	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	885
PspGI	CCWGG	1 cut(s)	885
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	757
PsuI	RGATCY	3 cut(s)	340, 673, 836
RsaI	GTAC	1 cut(s)	744
RsaNI	GTAC	1 cut(s)	743
RseI	CAYNNNNRTG	1 cut(s)	582
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	525, 765, 809
SatI	GCNGC	7 cut(s)	115, 124, 204, 245, 258, 303, 693
Sau3AI	GATC	5 cut(s)	340, 641, 673, 836, 910
Sau96I	GGNCC	1 cut(s)	757
ScaI	AGTACT	1 cut(s)	744
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	2 cut(s)	179, 887
SduI	GDGCHC	1 cut(s)	357
SfaNI	GCATC	1 cut(s)	615
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	4 cut(s)	45, 334, 484, 822
SseBI	AGGCCT	1 cut(s)	168
SspMI	CTAG	2 cut(s)	671, 749
SstI	GAGCTC	1 cut(s)	357
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	177, 885
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	1 cut(s)	562
TasI	AATT	4 cut(s)	45, 334, 484, 822
TatI	WGTACW	1 cut(s)	742
TauI	GCSGC	3 cut(s)	117, 126, 305
Tru1I	TTAA	3 cut(s)	525, 765, 809
Tru9I	TTAA	3 cut(s)	525, 765, 809
TscAI	CASTG	1 cut(s)	712
TseI	GCWGC	4 cut(s)	203, 244, 257, 692
TspDTI	ATGAA	5 cut(s)	243, 446, 489, 750, 803
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	712
XapI	RAATTY	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	562
XmnI	GAANNNNTTC	2 cut(s)	396, 498
XspI	CTAG	2 cut(s)	671, 749
ZrmI	AGTACT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.