Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002669

Physical Location & Seq

Genomic Coordinates Reverse (-)

31963418 .. 31964237

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0315700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGACTGTAATTATTCTTGGGTATATTGGTTGGATGACCTATATTGTTCTCCATGTGTTGCAATCTTACACGTCATTGGCAGGGGATATATTGACAAAGGAGCAAGCAGATCACTGGACAGATTATACCAGAAAAGTACAACTTTGTGGATGCTTGTTTCTGGGACTACTTAGCATCATACTGTTCATGGAGCAGTCTCCTCCTCTTTACCATGCATACACAACAATGACAGTATTTTTGTGGACACAAATATCTAGTGAATATCGGTTCATAAAAGCATTATGGAAACAGTTACATGGAAGAGAAATAAATTATTTCACAAAAGTTGGAGCTGCCTGTGCTGTCTCAGTATTCATACTTGAATATCTGGTGAATAGCTTCACCGAGAGGAAGCTCTACACATGGTGTTTTCTGACTGTGGGGGTCATAGCTTTTTTTTATCTTTTGAAGTCAATTCCATGGAGATCTGGGATTCCATTCTTTGTTTGTGGTGCATGCTGGTTCTTATCAGTATCTGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

174

Amino Acids

20.17

Weight (kDa)

8.19

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PigN	PF04987	1 - 171	3.3e-26	Phosphatidylinositolglycan class N (PIG-N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11870 AT1G11870 AT1G11870 AT1G11870 AT1G11870 AT1G11870
fragaria_vesca	FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670
malus_domestica	MD08G1187900.v1.1 MD15G1373800.v1.1
prunus_persica	Prupe.1G522400_v2.0.a1 Prupe.1G522400_v2.0.a1
pyrus_communis	pycom08g16120 pycom15g33480 pycom15g33490
rosa_chinensis	RchiOBHm_Chr7g0242571
rosa_laevigata	RLG00000000891
rosa_multiflora	Rmu_sc0000429.1_g000097
rosa_roxburghii	Rroxscaffold_3G00222620
rosa_rugosa	Rorug07G0315500 Rorug07G0315600 Rorug07G0315700 Rorug07G0315800
rosa_samantha	Rh7AG470900 Rh7BG441200 Rh7CG487800 Rh7DG456400
rosa_wichuraiana	Rw0G005480 Rw7G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	405
AfaI	GTAC	1 cut(s)	138
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	2 cut(s)	362, 448
AjiI	CACGTC	1 cut(s)	72
AluBI	AGCT	4 cut(s)	332, 378, 394, 431
AluI	AGCT	4 cut(s)	332, 378, 394, 431
Alw26I	GTCTC	2 cut(s)	201, 349
AlwNI	CAGNNNCTG	1 cut(s)	515
ApeKI	GCWGC	1 cut(s)	332
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
Asp700I	GAANNNNTTC	1 cut(s)	377
AsuHPI	GGTGA	2 cut(s)	373, 382
BbvI	GCAGC	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	201, 349
BfaI	CTAG	1 cut(s)	255
BglII	AGATCT	1 cut(s)	464
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
BmgBI	CACGTC	1 cut(s)	72
BmsI	GCATC	2 cut(s)	140, 183
BsaJI	CCNNGG	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	2 cut(s)	39, 155
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	2 cut(s)	189, 192
BseXI	GCAGC	1 cut(s)	319
BslFI	GGGAC	1 cut(s)	177
BsmAI	GTCTC	2 cut(s)	201, 349
BsmFI	GGGAC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	109, 464
Bsp19I	CCATGG	1 cut(s)	458
BspCNI	CTCAG	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	2 cut(s)	109, 464
BssT1I	CCWWGG	1 cut(s)	458
Bst4CI	ACNGT	5 cut(s)	7, 183, 232, 291, 418
Bst6I	CTCTTC	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	105, 496
BstDEI	CTNAG	2 cut(s)	170, 346
BstDSI	CCRYGG	1 cut(s)	458
BstF5I	GGATG	2 cut(s)	39, 155
BstKTI	GATC	2 cut(s)	112, 467
BstMAI	GTCTC	2 cut(s)	201, 349
BstMBI	GATC	2 cut(s)	109, 464
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BtgI	CCRYGG	1 cut(s)	458
BtrI	CACGTC	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	39, 155
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	105, 496
CaiI	CAGNNNCTG	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	7 cut(s)	53, 187, 212, 296, 402, 459, 495
CviJI	RGCY	4 cut(s)	332, 378, 394, 431
CviKI_1	RGCY	4 cut(s)	332, 378, 394, 431
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	2 cut(s)	170, 346
DpnI	GATC	2 cut(s)	111, 466
DpnII	GATC	2 cut(s)	109, 464
DraIII	CACNNNGTG	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	458
EcoT14I	CCWWGG	1 cut(s)	458
EcoT22I	ATGCAT	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	458
FaeI	CATG	7 cut(s)	56, 190, 215, 299, 405, 462, 498
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	7 cut(s)	52, 186, 211, 295, 401, 458, 494
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	2 cut(s)	46, 162
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	1 cut(s)	333
Hin1II	CATG	7 cut(s)	56, 190, 215, 299, 405, 462, 498
HinfI	GANTC	1 cut(s)	472
HphI	GGTGA	2 cut(s)	373, 382
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	2 cut(s)	414, 517
Hpy8I	GTNNAC	1 cut(s)	243
HpyCH4III	ACNGT	5 cut(s)	7, 183, 232, 291, 418
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	3 cut(s)	61, 215, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	2 cut(s)	170, 346
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	7 cut(s)	56, 190, 215, 299, 405, 462, 498
Kzo9I	GATC	2 cut(s)	109, 464
LmnI	GCTCC	3 cut(s)	100, 190, 329
LpnPI	CCDG	8 cut(s)	66, 100, 142, 146, 349, 353, 453, 484
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	2 cut(s)	140, 183
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	291
MalI	GATC	2 cut(s)	111, 466
MboI	GATC	2 cut(s)	109, 464
MboII	GAAGA	1 cut(s)	312
MflI	RGATCY	1 cut(s)	464
MluCI	AATT	3 cut(s)	9, 310, 453
MmeI	TCCRAC	2 cut(s)	11, 307
MnlI	CCTC	3 cut(s)	210, 213, 381
Mph1103I	ATGCAT	1 cut(s)	217
MroXI	GAANNNNTTC	1 cut(s)	377
MslI	CAYNNNNRTG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	338
NcoI	CCATGG	1 cut(s)	458
NdeII	GATC	2 cut(s)	109, 464
NlaIII	CATG	7 cut(s)	56, 190, 215, 299, 405, 462, 498
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	1 cut(s)	498
PaeI	GCATGC	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	472
PkrI	GCNGC	1 cut(s)	334
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	464
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	224
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	2 cut(s)	109, 464
SetI	ASST	6 cut(s)	41, 74, 334, 380, 396, 433
SfaNI	GCATC	2 cut(s)	140, 183
SmiMI	CAYNNNNRTG	1 cut(s)	224
SphI	GCATGC	1 cut(s)	498
Sse9I	AATT	3 cut(s)	9, 310, 453
SspMI	CTAG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	5 cut(s)	7, 183, 232, 291, 418
TaiI	ACGT	1 cut(s)	74
TasI	AATT	3 cut(s)	9, 310, 453
TatI	WGTACW	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	472
TscAI	CASTG	1 cut(s)	119
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	3 cut(s)	175, 259, 343
TspRI	CASTG	1 cut(s)	119
XceI	RCATGY	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.