Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002669

Physical Location & Seq

Genomic Coordinates Reverse (-)

31964301 .. 31966386

Gene Structure 2086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0315800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCTCGGCCGCCGACTGAGTCGAGGCCGGGACACGTGGCGATTATTGCTGGCTTCTATGAGGATCCGAGTGCTGTTACGAAAGATAACAATGGCGGTGTTGATGAGATGTAGGAGTTGTTTTGCAGGGTGGAAAGCTAATCCTGTTGAATTTGATTCGGTGTTTAACCGGAGCCGGCATACATTTTCGTATGGTAGTCCGGATATAGTTCCAATTTTCTGTGCTGCATTGCCTCACACTACTTGGAACAGTTATCCTCATGATTTCGAAGACTTTGCTACTGATGCCTCCTTTCTGGATGAGTGGTCGTTTGATCAATGTCAGAGCCTAATGAATAGGTCCAAAGAGGACCCAAAGTTGAAGGAGTTACTTTTACAGGATAATCTTGTTGTGTTTTTGCACCTACTTGGTTGTGATTCAAATGGTCATGCACATCGCCCCTTTTCCTCCATCTATCTCAATAATGTCTCGGTTGTTGACAGTATGGCTGAAAGGGTTTATAATCTTCTTGAAGATTACTACAAGGACAATCGTACAGCATACGTATTTACTGCTGATCATGGAATGCATGATAAAGGTAGCCACGGAGATGTACATCCTTCAAACACTGATACTCCCCTTGTTGTTTGGGGATCAGGTGTTAAACACCCAAAGCCTATTTCCAGTAGCAGCCATGGAGATGGACATTCTGATTGTGGTACTCATTTTGTTGATGACCATATGCATGACACGCCAACGCCTAAAGAATGGGGCCTTCATGGCATTGAAAGGGTGGATGTCAATCAAGCTGATATCGCACCTCTCATGTCAACACTTCTTGGATTGCCATGTCCTGTAAACTCGGTTGGGAGTTTACCCCTTGATTACATAGACATGAAAAAGACAGATGAAGTTGAAGCTGTTCTAGCCAATACAAAGCAACCTTTCAAACCATTGGGCCATTATTCAACCCTCTTGGATCAGATTGAGGATCATATATCTAATGGAGACTATGAAGCTGCAAGGAAACTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

338

Amino Acids

38.1

Weight (kDa)

5.91

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfatase	PF00884	149 - 225	1.9e-08	Sulfatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11870 AT1G11870 AT1G11870 AT1G11870 AT1G11870 AT1G11870
fragaria_vesca	FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670
malus_domestica	MD08G1187900.v1.1 MD15G1373800.v1.1
prunus_persica	Prupe.1G522400_v2.0.a1 Prupe.1G522400_v2.0.a1
pyrus_communis	pycom08g16120 pycom15g33480 pycom15g33490
rosa_chinensis	RchiOBHm_Chr7g0242571
rosa_laevigata	RLG00000000891
rosa_multiflora	Rmu_sc0000429.1_g000097
rosa_roxburghii	Rroxscaffold_3G00222620
rosa_rugosa	Rorug07G0315500 Rorug07G0315600 Rorug07G0315700 Rorug07G0315800
rosa_samantha	Rh7AG470900 Rh7BG441200 Rh7CG487800 Rh7DG456400
rosa_wichuraiana	Rw0G005480 Rw7G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	501
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	2 cut(s)	10, 95
AclWI	GGATC	5 cut(s)	58, 71, 640, 966, 978
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	1 cut(s)	149
AcvI	CACGTG	1 cut(s)	36
AfaI	GTAC	3 cut(s)	535, 594, 700
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	9 cut(s)	149, 361, 420, 512, 603, 767, 896, 928, 948
AjuI	GAANNNNNNNTTGG	2 cut(s)	643, 675
AluBI	AGCT	4 cut(s)	137, 788, 899, 998
AluI	AGCT	4 cut(s)	137, 788, 899, 998
Alw26I	GTCTC	2 cut(s)	472, 981
AlwI	GGATC	5 cut(s)	58, 71, 640, 966, 978
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	4 cut(s)	7, 25, 751, 937
ApeKI	GCWGC	3 cut(s)	224, 669, 998
ApoI	RAATTY	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	900
AspS9I	GGNCC	4 cut(s)	339, 349, 751, 937
AsuC2I	CCSGG	1 cut(s)	29
AsuII	TTCGAA	1 cut(s)	267
AvaII	GGWCC	2 cut(s)	339, 349
BamHI	GGATCC	1 cut(s)	63
BbrPI	CACGTG	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	211, 681, 985
BccI	CCATC	2 cut(s)	458, 674
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BclI	TGATCA	2 cut(s)	313, 556
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	472, 981
BfaI	CTAG	1 cut(s)	905
BglI	GCCNNNNNGGC	1 cut(s)	759
BisI	GCNGC	4 cut(s)	10, 225, 670, 999
BlsI	GCNGC	4 cut(s)	11, 226, 671, 1000
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	2 cut(s)	339, 349
BmgT120I	GGNCC	4 cut(s)	339, 349, 751, 937
BmiI	GGNNCC	4 cut(s)	65, 173, 351, 752
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	29
BsaAI	YACGTR	2 cut(s)	36, 544
BsaBI	GATNNNNATC	2 cut(s)	594, 780
BsaJI	CCNNGG	2 cut(s)	583, 673
BsaWI	WCCGGW	2 cut(s)	168, 199
BsaXI	ACNNNNNCTCC	2 cut(s)	598, 628
Bse118I	RCCGGY	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	663
Bse3DI	GCAATG	1 cut(s)	227
Bse8I	GATNNNNATC	2 cut(s)	594, 780
BseAI	TCCGGA	1 cut(s)	199
BseDI	CCNNGG	2 cut(s)	583, 673
BseGI	GGATG	3 cut(s)	304, 595, 781
BseJI	GATNNNNATC	2 cut(s)	594, 780
BseMI	GCAATG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	1 cut(s)	663
BseX3I	CGGCCG	1 cut(s)	7
BseXI	GCAGC	3 cut(s)	211, 681, 985
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	4 cut(s)	9, 27, 753, 939
BsiEI	CGRYCG	1 cut(s)	10
BsiSI	CCGG	4 cut(s)	28, 169, 175, 200
BslFI	GGGAC	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	472, 981
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	570
BsnI	GGCC	4 cut(s)	9, 27, 753, 939
Bsp119I	TTCGAA	1 cut(s)	267
Bsp13I	TCCGGA	1 cut(s)	199
Bsp1407I	TGTACA	1 cut(s)	592
Bsp143I	GATC	6 cut(s)	63, 313, 556, 632, 958, 970
Bsp19I	CCATGG	1 cut(s)	673
BspACI	CCGC	2 cut(s)	10, 95
BspANI	GGCC	4 cut(s)	9, 27, 753, 939
BspCNI	CTCAG	1 cut(s)	9
BspEI	TCCGGA	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	4 cut(s)	65, 173, 351, 752
BspPI	GGATC	5 cut(s)	58, 71, 640, 966, 978
BspT104I	TTCGAA	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	174
BsrGI	TGTACA	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	663
BssAI	RCCGGY	1 cut(s)	174
BssECI	CCNNGG	2 cut(s)	583, 673
BssMI	GATC	6 cut(s)	63, 313, 556, 632, 958, 970
BssT1I	CCWWGG	1 cut(s)	673
Bst4CI	ACNGT	2 cut(s)	251, 482
BstAUI	TGTACA	1 cut(s)	592
BstBAI	YACGTR	2 cut(s)	36, 544
BstBI	TTCGAA	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	51, 176
BstDEI	CTNAG	1 cut(s)	17
BstDSI	CCRYGG	2 cut(s)	583, 673
BstF5I	GGATG	3 cut(s)	304, 595, 781
BstKTI	GATC	6 cut(s)	66, 316, 559, 635, 961, 973
BstMAI	GTCTC	2 cut(s)	472, 981
BstMBI	GATC	6 cut(s)	63, 313, 556, 632, 958, 970
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	6 cut(s)	46, 284, 730, 759, 794, 905
BstSCI	CCNGG	1 cut(s)	27
BstSNI	TACGTA	1 cut(s)	544
BstV1I	GCAGC	3 cut(s)	211, 681, 985
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	63
BstXI	CCANNNNNNTGG	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	63
BstZI	CGGCCG	1 cut(s)	7
BsuRI	GGCC	4 cut(s)	9, 27, 753, 939
BtgI	CCRYGG	2 cut(s)	583, 673
BtgZI	GCGATG	1 cut(s)	419
BtsCI	GGATG	3 cut(s)	304, 595, 781
BtsIMutI	CAGTG	1 cut(s)	606
Cac8I	GCNNGC	2 cut(s)	51, 176
CciI	TCATGA	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	174
Cfr13I	GGNCC	4 cut(s)	339, 349, 751, 937
Csp6I	GTAC	3 cut(s)	534, 593, 699
CviQI	GTAC	3 cut(s)	534, 593, 699
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	6 cut(s)	65, 315, 558, 634, 960, 972
DpnII	GATC	6 cut(s)	63, 313, 556, 632, 958, 970
EaeI	YGGCCR	1 cut(s)	7
EagI	CGGCCG	1 cut(s)	7
EclXI	CGGCCG	1 cut(s)	7
Eco105I	TACGTA	1 cut(s)	544
Eco130I	CCWWGG	1 cut(s)	673
Eco32I	GATATC	1 cut(s)	793
Eco47I	GGWCC	2 cut(s)	339, 349
Eco52I	CGGCCG	1 cut(s)	7
Eco72I	CACGTG	1 cut(s)	36
EcoO109I	RGGNCCY	2 cut(s)	349, 751
EcoRV	GATATC	1 cut(s)	793
EcoT14I	CCWWGG	1 cut(s)	673
EcoT22I	ATGCAT	2 cut(s)	570, 726
ErhI	CCWWGG	1 cut(s)	673
FaqI	GGGAC	1 cut(s)	44
FauNDI	CATATG	1 cut(s)	720
FbaI	TGATCA	2 cut(s)	313, 556
Fnu4HI	GCNGC	4 cut(s)	10, 225, 670, 999
FokI	GGATG	3 cut(s)	311, 582, 788
Fsp4HI	GCNGC	4 cut(s)	10, 225, 670, 999
FspBI	CTAG	1 cut(s)	905
GluI	GCNGC	4 cut(s)	10, 225, 670, 999
HaeIII	GGCC	4 cut(s)	9, 27, 753, 939
HapII	CCGG	4 cut(s)	28, 169, 175, 200
HincII	GTYRAC	2 cut(s)	478, 810
HindII	GTYRAC	2 cut(s)	478, 810
HinfI	GANTC	3 cut(s)	19, 155, 416
HpaII	CCGG	4 cut(s)	28, 169, 175, 200
Hpy166II	GTNNAC	4 cut(s)	478, 810, 838, 854
Hpy188I	TCNGA	4 cut(s)	68, 324, 691, 963
Hpy188III	TCNNGA	4 cut(s)	200, 260, 296, 509
Hpy8I	GTNNAC	4 cut(s)	478, 810, 838, 854
HpyAV	CCTTC	3 cut(s)	355, 609, 764
HpyCH4III	ACNGT	2 cut(s)	251, 482
HpyCH4IV	ACGT	2 cut(s)	35, 543
HpyCH4V	TGCA	7 cut(s)	125, 227, 400, 431, 568, 724, 1001
HpyF10VI	GCNNNNNNNGC	6 cut(s)	46, 284, 730, 759, 794, 905
HpyF3I	CTNAG	1 cut(s)	17
HpySE526I	ACGT	2 cut(s)	35, 543
Kpn2I	TCCGGA	1 cut(s)	199
KroI	GCCGGC	1 cut(s)	174
KroNI	GCCGGC	1 cut(s)	176
Ksp22I	TGATCA	2 cut(s)	313, 556
Kzo9I	GATC	6 cut(s)	63, 313, 556, 632, 958, 970
LmnI	GCTCC	1 cut(s)	171
Lsp1109I	GCAGC	3 cut(s)	211, 681, 985
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	905
MaeII	ACGT	2 cut(s)	35, 543
MaeIII	GTNAC	2 cut(s)	75, 366
MalI	GATC	6 cut(s)	65, 315, 558, 634, 960, 972
MboI	GATC	6 cut(s)	63, 313, 556, 632, 958, 970
MboII	GAAGA	3 cut(s)	281, 497, 524
MflI	RGATCY	1 cut(s)	63
MluCI	AATT	2 cut(s)	149, 213
MlyI	GAGTC	1 cut(s)	28
Mph1103I	ATGCAT	2 cut(s)	570, 726
MroI	TCCGGA	1 cut(s)	199
MroNI	GCCGGC	1 cut(s)	174
MroXI	GAANNNNTTC	1 cut(s)	900
MseI	TTAA	3 cut(s)	165, 642, 1015
MslI	CAYNNNNRTG	4 cut(s)	588, 678, 723, 872
MspI	CCGG	4 cut(s)	28, 169, 175, 200
MspR9I	CCNGG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	570
MwoI	GCNNNNNNNGC	6 cut(s)	46, 284, 730, 759, 794, 905
NaeI	GCCGGC	1 cut(s)	176
NciI	CCSGG	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	673
NdeI	CATATG	1 cut(s)	720
NdeII	GATC	6 cut(s)	63, 313, 556, 632, 958, 970
NgoMIV	GCCGGC	1 cut(s)	174
NlaIV	GGNNCC	4 cut(s)	65, 173, 351, 752
NsiI	ATGCAT	2 cut(s)	570, 726
NspV	TTCGAA	1 cut(s)	267
PagI	TCATGA	1 cut(s)	259
PctI	GAATGC	1 cut(s)	570
PdiI	GCCGGC	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	900
PfeI	GAWTC	2 cut(s)	155, 416
PflFI	GACNNNGTC	1 cut(s)	18
PkrI	GCNGC	4 cut(s)	11, 226, 671, 1000
PleI	GAGTC	1 cut(s)	27
PmaCI	CACGTG	1 cut(s)	36
PmlI	CACGTG	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	27
Ppu21I	YACGTR	2 cut(s)	36, 544
PpuMI	RGGWCCY	1 cut(s)	349
PsiI	TTATAA	1 cut(s)	501
Psp5II	RGGWCCY	1 cut(s)	349
PspCI	CACGTG	1 cut(s)	36
PspN4I	GGNNCC	4 cut(s)	65, 173, 351, 752
PspPI	GGNCC	4 cut(s)	339, 349, 751, 937
PspPPI	RGGWCCY	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	63
PsyI	GACNNNGTC	1 cut(s)	18
RsaI	GTAC	3 cut(s)	535, 594, 700
RsaNI	GTAC	3 cut(s)	534, 593, 699
RseI	CAYNNNNRTG	4 cut(s)	588, 678, 723, 872
SaqAI	TTAA	3 cut(s)	165, 642, 1015
SatI	GCNGC	4 cut(s)	10, 225, 670, 999
Sau3AI	GATC	6 cut(s)	63, 313, 556, 632, 958, 970
Sau96I	GGNCC	4 cut(s)	339, 349, 751, 937
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	29
SfaNI	GCATC	1 cut(s)	274
SfuI	TTCGAA	1 cut(s)	267
SinI	GGWCC	2 cut(s)	339, 349
SmiMI	CAYNNNNRTG	4 cut(s)	588, 678, 723, 872
SnaBI	TACGTA	1 cut(s)	544
Sse9I	AATT	2 cut(s)	149, 213
SsiI	CCGC	2 cut(s)	10, 95
SspMI	CTAG	1 cut(s)	905
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	673
TaaI	ACNGT	2 cut(s)	251, 482
TaiI	ACGT	2 cut(s)	38, 546
TaqI	TCGA	2 cut(s)	22, 267
TasI	AATT	2 cut(s)	149, 213
TatI	WGTACW	1 cut(s)	592
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	155, 416
Tru1I	TTAA	3 cut(s)	165, 642, 1015
Tru9I	TTAA	3 cut(s)	165, 642, 1015
TscAI	CASTG	1 cut(s)	613
TseI	GCWGC	3 cut(s)	224, 669, 998
TspDTI	ATGAA	5 cut(s)	347, 746, 890, 903, 1008
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	1 cut(s)	613
Tth111I	GACNNNGTC	1 cut(s)	18
VpaK11BI	GGWCC	2 cut(s)	339, 349
XapI	RAATTY	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	900
XspI	CTAG	1 cut(s)	905
Zsp2I	ATGCAT	2 cut(s)	570, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.