Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002669

Physical Location & Seq

Genomic Coordinates Reverse (-)

31960586 .. 31963040

Gene Structure 2455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0315600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCTGTGTTTGTGAAATATCATGTCTGCAGAATTTGGAGTGGGGTTATGATTATTTTGATCGGAGCAGCTGGGAGGTTTCTAGATCAGCATACTGAAGGAAACAAGTTTTGTCTCACTATCTGTAATAGTGATGCAAAGAAATCCAAGTTCCCCATGCTCTTTCAATTACAGGCTCTTTTGGTTGGATTATCATCTGTGACGGTGTCAATATCAACATCTCATAGAACAGAGAACCAAGAATTGCATGTCTGGCACCAGATTATAAATTGGTCCATTGCTGGTCCCTCGATGGTACTTCCATTATTTTCAGCAAATGGTCTCTTGTCCAGGCTTACGTCCATATTTCTTGGCTTTGCGCCCACATTTCTTCTATTATCTATCGGATATGAAGCTGTCTTCTATGGTGCTTTTGCTCTTGTACTCATGGCTTGGATACTATTTGAAAATACTCTTATTTACTCAAGTAAGGTGAAAATGTTGTCAAGTTCCTTTAACAATATGGAGGATAATGCCATAGTTGATGGTCGATACTTGCAGCTGTCTGACATCAGAATTCCTTTAATATTTGTAAGTGCTTTGTATGTTGCTAATGGAGGAACGGGAAATTTTGCAAGTATCGCAAGTTTCAAAATCTCATCAGTCTATCGGTTCATTACTGTCGTCAGCCCTTTTCTTATGGCAGCGTTACTCATCTTCAAGCTATTCATTCCATTTCTGCTTGTCATATGCGTATTCAGTGCAATAACAAAGCTGAACCGACTTCCACGATTGGGATGCTATTTTCTCGTTATATTGTTTTCAGACGTTATGACTATGCATTTCTTCTTCCTGGTCCAGAATACAGGAAGTTGGATGGAAATTGGTAACAGCATCAGCCATTTTGGAATCATGACTGCTCAAGTTGTCTTTGTTCTGTTGCTTTTCGCACTCACAAACGTATACACGAAGGATATCTGTATTGGTTCTGTGGAGCGGTCTTCTCGGAAAGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

332

Amino Acids

37.06

Weight (kDa)

9.25

Isoelectric Point (pI)

24.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PigN	PF04987	12 - 284	1.6e-72	Phosphatidylinositolglycan class N (PIG-N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11870 AT1G11870 AT1G11870 AT1G11870 AT1G11870 AT1G11870
fragaria_vesca	FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670
malus_domestica	MD08G1187900.v1.1 MD15G1373800.v1.1
prunus_persica	Prupe.1G522400_v2.0.a1 Prupe.1G522400_v2.0.a1
pyrus_communis	pycom08g16120 pycom15g33480 pycom15g33490
rosa_chinensis	RchiOBHm_Chr7g0242571
rosa_laevigata	RLG00000000891
rosa_multiflora	Rmu_sc0000429.1_g000097
rosa_roxburghii	Rroxscaffold_3G00222620
rosa_rugosa	Rorug07G0315500 Rorug07G0315600 Rorug07G0315700 Rorug07G0315800
rosa_samantha	Rh7AG470900 Rh7BG441200 Rh7CG487800 Rh7DG456400
rosa_wichuraiana	Rw0G005480 Rw7G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	255
AccBSI	CCGCTC	1 cut(s)	976
AccI	GTMKAC	1 cut(s)	942
AciI	CCGC	1 cut(s)	976
AcsI	RAATTY	3 cut(s)	33, 555, 607
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	2 cut(s)	297, 423
AfiI	CCNNNNNNNGG	1 cut(s)	773
AgsI	TTSAA	4 cut(s)	167, 446, 631, 700
AjnI	CCWGG	2 cut(s)	329, 831
AluBI	AGCT	5 cut(s)	71, 395, 541, 703, 754
AluI	AGCT	5 cut(s)	71, 395, 541, 703, 754
Alw26I	GTCTC	2 cut(s)	119, 326
ApeKI	GCWGC	3 cut(s)	68, 538, 683
ApoI	RAATTY	3 cut(s)	33, 555, 607
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	3 cut(s)	273, 284, 835
AsuHPI	GGTGA	1 cut(s)	484
AvaII	GGWCC	3 cut(s)	273, 284, 835
BanI	GGYRCC	1 cut(s)	255
BbsI	GAAGAC	2 cut(s)	391, 972
BbvI	GCAGC	3 cut(s)	80, 550, 695
BccI	CCATC	3 cut(s)	286, 518, 850
BcgI	CGANNNNNNTGC	2 cut(s)	759, 793
BciT130I	CCWGG	2 cut(s)	331, 833
BciVI	GTATCC	1 cut(s)	429
BcoDI	GTCTC	2 cut(s)	119, 326
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	28
BfuI	GTATCC	1 cut(s)	429
BisI	GCNGC	3 cut(s)	69, 539, 684
BlsI	GCNGC	3 cut(s)	70, 540, 685
Bme1390I	CCNGG	2 cut(s)	331, 833
Bme18I	GGWCC	3 cut(s)	273, 284, 835
BmgT120I	GGNCC	3 cut(s)	273, 284, 835
BmiI	GGNNCC	2 cut(s)	257, 286
BmrFI	CCNGG	2 cut(s)	331, 833
BmsI	GCATC	3 cut(s)	124, 767, 882
BpiI	GAAGAC	2 cut(s)	391, 972
BpuEI	CTTGAG	2 cut(s)	448, 885
BsaBI	GATNNNNATC	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	1 cut(s)	773
Bse3DI	GCAATG	1 cut(s)	276
Bse8I	GATNNNNATC	1 cut(s)	193
BseBI	CCWGG	2 cut(s)	331, 833
BseGI	GGATG	2 cut(s)	782, 861
BseJI	GATNNNNATC	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	773
BseMI	GCAATG	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	80, 550, 695
BseYI	CCCAGC	1 cut(s)	71
BshNI	GGYRCC	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	773
BsmAI	GTCTC	2 cut(s)	119, 326
BsmFI	GGGAC	1 cut(s)	270
Bso31I	GGTCTC	1 cut(s)	326
Bsp143I	GATC	2 cut(s)	60, 85
BspACI	CCGC	1 cut(s)	976
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	2 cut(s)	257, 286
BspMAI	CTGCAG	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	976
BsrDI	GCAATG	1 cut(s)	276
BssMI	GATC	2 cut(s)	60, 85
BssNAI	GTATAC	1 cut(s)	943
Bst1107I	GTATAC	1 cut(s)	943
Bst2UI	CCWGG	2 cut(s)	331, 833
Bst4CI	ACNGT	2 cut(s)	205, 661
BstF5I	GGATG	2 cut(s)	782, 861
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	2 cut(s)	63, 88
BstMAI	GTCTC	2 cut(s)	119, 326
BstMBI	GATC	2 cut(s)	60, 85
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 620
BstNI	CCWGG	2 cut(s)	331, 833
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	329, 831
BstSFI	CTRYAG	1 cut(s)	28
BstV1I	GCAGC	3 cut(s)	80, 550, 695
BstV2I	GAAGAC	2 cut(s)	391, 972
BstZ17I	GTATAC	1 cut(s)	943
BsuI	GTATCC	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	782, 861
BtsIMutI	CAGTG	1 cut(s)	745
CciI	TCATGA	1 cut(s)	891
CfoI	GCGC	1 cut(s)	361
Cfr13I	GGNCC	3 cut(s)	273, 284, 835
Csp6I	GTAC	2 cut(s)	296, 422
CviAII	CATG	5 cut(s)	23, 157, 248, 427, 892
CviQI	GTAC	2 cut(s)	296, 422
DpnI	GATC	2 cut(s)	62, 87
DpnII	GATC	2 cut(s)	60, 85
Eco31I	GGTCTC	1 cut(s)	326
Eco32I	GATATC	1 cut(s)	955
Eco47I	GGWCC	3 cut(s)	273, 284, 835
Eco57I	CTGAAG	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	555
EcoRII	CCWGG	2 cut(s)	329, 831
EcoRV	GATATC	1 cut(s)	955
EcoT22I	ATGCAT	1 cut(s)	822
FaeI	CATG	5 cut(s)	26, 160, 251, 430, 895
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	5 cut(s)	22, 156, 247, 426, 891
FauNDI	CATATG	1 cut(s)	728
FblI	GTMKAC	1 cut(s)	942
Fnu4HI	GCNGC	3 cut(s)	69, 539, 684
FokI	GGATG	2 cut(s)	789, 868
Fsp4HI	GCNGC	3 cut(s)	69, 539, 684
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	3 cut(s)	69, 539, 684
GsaI	CCCAGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	5 cut(s)	26, 160, 251, 430, 895
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HinfI	GANTC	1 cut(s)	888
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	1 cut(s)	943
Hpy188I	TCNGA	6 cut(s)	65, 386, 547, 554, 805, 987
Hpy188III	TCNNGA	3 cut(s)	83, 838, 892
Hpy8I	GTNNAC	1 cut(s)	943
HpyAV	CCTTC	2 cut(s)	92, 943
HpyCH4III	ACNGT	2 cut(s)	205, 661
HpyCH4IV	ACGT	3 cut(s)	338, 807, 939
HpyCH4V	TGCA	7 cut(s)	30, 137, 247, 538, 614, 743, 820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 620
HpySE526I	ACGT	3 cut(s)	338, 807, 939
Hsp92II	CATG	5 cut(s)	26, 160, 251, 430, 895
HspAI	GCGC	1 cut(s)	359
Kzo9I	GATC	2 cut(s)	60, 85
LmnI	GCTCC	2 cut(s)	65, 973
Lsp1109I	GCAGC	3 cut(s)	80, 550, 695
LweI	GCATC	3 cut(s)	124, 767, 882
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	3 cut(s)	338, 807, 939
MaeIII	GTNAC	3 cut(s)	199, 687, 866
MalI	GATC	2 cut(s)	62, 87
MbiI	CCGCTC	1 cut(s)	976
MboI	GATC	2 cut(s)	60, 85
MboII	GAAGA	6 cut(s)	362, 391, 688, 817, 820, 972
MluCI	AATT	8 cut(s)	33, 167, 242, 268, 555, 607, 861, 993
MmeI	TCCRAC	2 cut(s)	166, 833
MnlI	CCTC	4 cut(s)	69, 298, 499, 590
Mph1103I	ATGCAT	1 cut(s)	822
MseI	TTAA	3 cut(s)	495, 563, 997
MspA1I	CMGCKG	2 cut(s)	71, 541
MspR9I	CCNGG	2 cut(s)	331, 833
MvaI	CCWGG	2 cut(s)	331, 833
MwoI	GCNNNNNNNGC	2 cut(s)	253, 620
NdeI	CATATG	1 cut(s)	728
NdeII	GATC	2 cut(s)	60, 85
NlaIII	CATG	5 cut(s)	26, 160, 251, 430, 895
NlaIV	GGNNCC	2 cut(s)	257, 286
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	822
NspI	RCATGY	1 cut(s)	251
PagI	TCATGA	1 cut(s)	891
PfeI	GAWTC	1 cut(s)	888
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	70, 540, 685
PsiI	TTATAA	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	329, 831
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	2 cut(s)	329, 831
PspN4I	GGNNCC	2 cut(s)	257, 286
PspPI	GGNCC	3 cut(s)	273, 284, 835
PstI	CTGCAG	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	205
PvuII	CAGCTG	2 cut(s)	71, 541
RsaI	GTAC	2 cut(s)	297, 423
RsaNI	GTAC	2 cut(s)	296, 422
SaqAI	TTAA	3 cut(s)	495, 563, 997
SatI	GCNGC	3 cut(s)	69, 539, 684
Sau3AI	GATC	2 cut(s)	60, 85
Sau96I	GGNCC	3 cut(s)	273, 284, 835
ScrFI	CCNGG	2 cut(s)	331, 833
SfaNI	GCATC	3 cut(s)	124, 767, 882
SfcI	CTRYAG	1 cut(s)	28
SinI	GGWCC	3 cut(s)	273, 284, 835
SmlI	CTYRAG	2 cut(s)	463, 900
SmoI	CTYRAG	2 cut(s)	463, 900
Sse9I	AATT	8 cut(s)	33, 167, 242, 268, 555, 607, 861, 993
SsiI	CCGC	1 cut(s)	976
SspI	AATATT	1 cut(s)	567
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	2 cut(s)	329, 831
TaaI	ACNGT	2 cut(s)	205, 661
TaiI	ACGT	3 cut(s)	341, 810, 942
TaqI	TCGA	2 cut(s)	290, 529
TasI	AATT	8 cut(s)	33, 167, 242, 268, 555, 607, 861, 993
TatI	WGTACW	1 cut(s)	421
TfiI	GAWTC	1 cut(s)	888
Tru1I	TTAA	3 cut(s)	495, 563, 997
Tru9I	TTAA	3 cut(s)	495, 563, 997
TscAI	CASTG	1 cut(s)	745
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	3 cut(s)	68, 538, 683
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	3 cut(s)	405, 643, 697
TspRI	CASTG	1 cut(s)	745
Tth111I	GACNNNGTC	1 cut(s)	205
VpaK11BI	GGWCC	3 cut(s)	273, 284, 835
XapI	RAATTY	3 cut(s)	33, 555, 607
XbaI	TCTAGA	1 cut(s)	82
XceI	RCATGY	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	942
XspI	CTAG	1 cut(s)	83
Zsp2I	ATGCAT	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.