Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002669

Physical Location & Seq

Genomic Coordinates Forward (+)

32917199 .. 32919003

Gene Structure 1805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGTTTGGGCGGGACGACCTTGCAAACCCTGAAGCTCGCCCCAATTCCTCCACCTTCCTTTTCTTCTTCTTTCCGCTCCGTTTTCAAACCGTTTTCCCAAACCTTTCTCTGCCGCCATAGCCGCAGACAAAGACTTCCACTTGCTCCGCACTTCTTCGTCAGAGGCCTTTCAGCCCCGGCCGAACAGGCAACTGCCACCGCAGCCCCAAAAGAAACAAGCCCAGATGAAAAGGGTGTGAAGCAGCAATGGAAAGCAGCGATAGACTTCAAGTGGATAAGGGACAACAAGGACGCGGTTGCGGCCAACATAGAGAAGAGGAACTCCAATGCCAATTTGGATCTTGTGCTTGAGCTCTACCACAAAATGCTCAATCTTCAAAAGGAAGTTGAACGGCTTCGCGGGGAAAGGAATGTGGTTGCAAACAAGATGAAAGGAAAGTTGGAGCCATCTGAGCGTCAAAAACTTATAGATGAAGGAAAGAATTTGAAGGAAGGGCTTCTTTCTTTGGAAGAAGACCTGCTTAAACTTATTGATGAGCTTCAGCAGGAAGCACAACGTATACCAAATATGACTCATCCTGATGTCCCGATAGGCGGAGAGGATTTTTCAACCATAAGAAAGATGCTTTCCTGTCAAGGATCATCTCTTCCTCAACTTGGAAAGGAACTAGATCTTTTTGATTTTGACGCTGCTTCAGAGGTCAGTGGCTCAAAGTTTTACTATCTGAAGAATGAAGCAGTACTCCTAGAGATGGCCCTTATTAACTGGACGCTCGTGGAAGTAATGAAAAGTGGCTTCACACCTTTAACAACCCCAGAAATTGTATGTGATAGATCCTCCATTGTTGAAAAATGTGGTTTCCAACCCCGAGGAGCAAATACCCAGGTTTATTCTATTGAGGATAGTGATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

306

Amino Acids

34.22

Weight (kDa)

6.92

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Seryl_tRNA_N	PF02403	88 - 191	9.5e-20	Seryl-tRNA synthetase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11870 AT1G11870 AT1G11870 AT1G11870 AT1G11870 AT1G11870
fragaria_vesca	FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670
malus_domestica	MD08G1187900.v1.1 MD15G1373800.v1.1
prunus_persica	Prupe.1G522400_v2.0.a1 Prupe.1G522400_v2.0.a1
pyrus_communis	pycom08g16120 pycom15g33480 pycom15g33490
rosa_chinensis	RchiOBHm_Chr7g0242571
rosa_laevigata	RLG00000000891
rosa_multiflora	Rmu_sc0000429.1_g000097
rosa_roxburghii	Rroxscaffold_3G00222620
rosa_rugosa	Rorug07G0315500 Rorug07G0315600 Rorug07G0315700 Rorug07G0315800
rosa_samantha	Rh7AG470900 Rh7BG441200 Rh7CG487800 Rh7DG456400
rosa_wichuraiana	Rw0G005480 Rw7G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	528
AccBSI	CCGCTC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	562
AccII	CGCG	2 cut(s)	296, 402
AclWI	GGATC	3 cut(s)	348, 649, 831
AcoI	YGGCCR	2 cut(s)	180, 303
AcsI	RAATTY	1 cut(s)	484
AcuI	CTGAAG	4 cut(s)	53, 527, 681, 749
AfaI	GTAC	1 cut(s)	744
AfiI	CCNNNNNNNGG	3 cut(s)	596, 659, 754
AgsI	TTSAA	7 cut(s)	88, 271, 380, 392, 490, 612, 851
AjnI	CCWGG	1 cut(s)	885
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	3 cut(s)	37, 355, 541
AluI	AGCT	3 cut(s)	37, 355, 541
Alw21I	GWGCWC	1 cut(s)	357
AlwI	GGATC	3 cut(s)	348, 649, 831
Ama87I	CYCGRG	1 cut(s)	870
AoxI	GGCC	4 cut(s)	166, 180, 303, 756
ApeKI	GCWGC	4 cut(s)	203, 244, 257, 692
ApoI	RAATTY	1 cut(s)	484
Asp700I	GAANNNNTTC	2 cut(s)	396, 498
AspS9I	GGNCC	1 cut(s)	757
AsuC2I	CCSGG	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	870
BanII	GRGCYC	1 cut(s)	357
BauI	CACGAG	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	4 cut(s)	215, 256, 269, 679
BccI	CCATC	2 cut(s)	457, 748
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	887
BcnI	CCSGG	1 cut(s)	179
BfaI	CTAG	2 cut(s)	671, 749
BfuAI	ACCTGC	1 cut(s)	528
BglI	GCCNNNNNGGC	1 cut(s)	188
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	7 cut(s)	115, 124, 204, 245, 258, 303, 693
BlsI	GCNGC	7 cut(s)	116, 125, 205, 246, 259, 304, 694
BmcAI	AGTACT	1 cut(s)	744
Bme1390I	CCNGG	2 cut(s)	179, 887
BmeT110I	CYCGRG	1 cut(s)	870
BmgT120I	GGNCC	1 cut(s)	757
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	179, 887
BmsI	GCATC	1 cut(s)	615
BpiI	GAAGAC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	909
BsaJI	CCNNGG	3 cut(s)	177, 871, 885
Bsc4I	CCNNNNNNNGG	3 cut(s)	596, 659, 754
Bse1I	ACTGG	1 cut(s)	773
Bse3DI	GCAATG	1 cut(s)	254
Bse8I	GATNNNNATC	1 cut(s)	909
BseBI	CCWGG	1 cut(s)	887
BseDI	CCNNGG	3 cut(s)	177, 871, 885
BseGI	GGATG	1 cut(s)	577
BseJI	GATNNNNATC	1 cut(s)	909
BseLI	CCNNNNNNNGG	3 cut(s)	596, 659, 754
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	773
BseRI	GAGGAG	1 cut(s)	888
BseX3I	CGGCCG	1 cut(s)	180
BseXI	GCAGC	4 cut(s)	215, 256, 269, 679
Bsh1236I	CGCG	2 cut(s)	296, 402
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	4 cut(s)	168, 182, 305, 758
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	870
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	3 cut(s)	28, 296, 572
BslI	CCNNNNNNNGG	3 cut(s)	596, 659, 754
BsmFI	GGGAC	3 cut(s)	28, 296, 572
BsnI	GGCC	4 cut(s)	168, 182, 305, 758
BsoBI	CYCGRG	1 cut(s)	870
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	5 cut(s)	340, 641, 673, 836, 910
BspANI	GGCC	4 cut(s)	168, 182, 305, 758
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	2 cut(s)	296, 402
BspLI	GGNNCC	1 cut(s)	447
BspMI	ACCTGC	1 cut(s)	528
BspPI	GGATC	3 cut(s)	348, 649, 831
BsrBI	CCGCTC	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	773
BssECI	CCNNGG	3 cut(s)	177, 871, 885
BssMI	GATC	5 cut(s)	340, 641, 673, 836, 910
BssNAI	GTATAC	1 cut(s)	563
BssSI	CACGAG	1 cut(s)	776
Bst1107I	GTATAC	1 cut(s)	563
Bst2BI	CACGAG	1 cut(s)	776
Bst2UI	CCWGG	1 cut(s)	887
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	2 cut(s)	311, 654
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	577
BstFNI	CGCG	2 cut(s)	296, 402
BstKTI	GATC	5 cut(s)	343, 644, 676, 839, 913
BstMBI	GATC	5 cut(s)	340, 641, 673, 836, 910
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	6 cut(s)	120, 123, 188, 203, 302, 454
BstNI	CCWGG	1 cut(s)	887
BstSCI	CCNGG	2 cut(s)	177, 885
BstUI	CGCG	2 cut(s)	296, 402
BstV1I	GCAGC	4 cut(s)	215, 256, 269, 679
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	3 cut(s)	340, 673, 836
BstYI	RGATCY	3 cut(s)	340, 673, 836
BstZ17I	GTATAC	1 cut(s)	563
BstZI	CGGCCG	1 cut(s)	180
BsuRI	GGCC	4 cut(s)	168, 182, 305, 758
BtsCI	GGATG	1 cut(s)	577
BtsIMutI	CAGTG	1 cut(s)	712
BveI	ACCTGC	1 cut(s)	528
Cac8I	GCNNGC	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	757
CseI	GACGC	4 cut(s)	302, 446, 698, 781
Csp6I	GTAC	1 cut(s)	743
CviQI	GTAC	1 cut(s)	743
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	5 cut(s)	342, 643, 675, 838, 912
DpnII	GATC	5 cut(s)	340, 641, 673, 836, 910
EaeI	YGGCCR	2 cut(s)	180, 303
EagI	CGGCCG	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	311, 654
EarI	CTCTTC	2 cut(s)	311, 654
EciI	GGCGGA	1 cut(s)	612
Ecl136II	GAGCTC	1 cut(s)	355
EclXI	CGGCCG	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	357
Eco52I	CGGCCG	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	4 cut(s)	53, 527, 681, 749
Eco88I	CYCGRG	1 cut(s)	870
EcoICRI	GAGCTC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	885
EcoT38I	GRGCYC	1 cut(s)	357
FaiI	YATR	7 cut(s)	120, 311, 470, 563, 572, 617, 829
FalI	AAGNNNNNCTT	4 cut(s)	486, 518, 507, 539
FaqI	GGGAC	3 cut(s)	28, 296, 572
FauI	CCCGC	2 cut(s)	5, 395
FblI	GTMKAC	1 cut(s)	562
Fnu4HI	GCNGC	7 cut(s)	115, 124, 204, 245, 258, 303, 693
FokI	GGATG	1 cut(s)	564
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	7 cut(s)	115, 124, 204, 245, 258, 303, 693
FspBI	CTAG	2 cut(s)	671, 749
GluI	GCNGC	7 cut(s)	115, 124, 204, 245, 258, 303, 693
HaeIII	GGCC	4 cut(s)	168, 182, 305, 758
HapII	CCGG	1 cut(s)	179
HgaI	GACGC	4 cut(s)	302, 446, 698, 781
HinfI	GANTC	1 cut(s)	574
HpaII	CCGG	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188I	TCNGA	4 cut(s)	164, 454, 700, 729
Hpy188III	TCNNGA	2 cut(s)	581, 589
Hpy8I	GTNNAC	1 cut(s)	563
HpyAV	CCTTC	4 cut(s)	66, 470, 484, 488
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	2 cut(s)	25, 422
HpyF10VI	GCNNNNNNNGC	6 cut(s)	120, 123, 188, 203, 302, 454
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	1 cut(s)	559
Kzo9I	GATC	5 cut(s)	340, 641, 673, 836, 910
LmnI	GCTCC	4 cut(s)	83, 151, 445, 875
Lsp1109I	GCAGC	4 cut(s)	215, 256, 269, 679
LweI	GCATC	1 cut(s)	615
MaeI	CTAG	2 cut(s)	671, 749
MaeII	ACGT	1 cut(s)	559
MalI	GATC	5 cut(s)	342, 643, 675, 838, 912
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	5 cut(s)	340, 641, 673, 836, 910
MboII	GAAGA	9 cut(s)	57, 60, 148, 328, 368, 524, 527, 641, 742
MflI	RGATCY	3 cut(s)	340, 673, 836
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	4 cut(s)	45, 334, 484, 822
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	2 cut(s)	423, 889
MnlI	CCTC	9 cut(s)	60, 158, 312, 595, 663, 694, 850, 866, 895
MroXI	GAANNNNTTC	2 cut(s)	396, 498
MseI	TTAA	3 cut(s)	525, 765, 809
MslI	CAYNNNNRTG	1 cut(s)	582
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	179, 887
MvaI	CCWGG	1 cut(s)	887
MvnI	CGCG	2 cut(s)	296, 402
MwoI	GCNNNNNNNGC	6 cut(s)	120, 123, 188, 203, 302, 454
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	5 cut(s)	340, 641, 673, 836, 910
NlaIV	GGNNCC	1 cut(s)	447
PceI	AGGCCT	1 cut(s)	168
PdmI	GAANNNNTTC	2 cut(s)	396, 498
PkrI	GCNGC	7 cut(s)	116, 125, 205, 246, 259, 304, 694
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Psp124BI	GAGCTC	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	885
PspGI	CCWGG	1 cut(s)	885
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	757
PsuI	RGATCY	3 cut(s)	340, 673, 836
RsaI	GTAC	1 cut(s)	744
RsaNI	GTAC	1 cut(s)	743
RseI	CAYNNNNRTG	1 cut(s)	582
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	525, 765, 809
SatI	GCNGC	7 cut(s)	115, 124, 204, 245, 258, 303, 693
Sau3AI	GATC	5 cut(s)	340, 641, 673, 836, 910
Sau96I	GGNCC	1 cut(s)	757
ScaI	AGTACT	1 cut(s)	744
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	2 cut(s)	179, 887
SduI	GDGCHC	1 cut(s)	357
SfaNI	GCATC	1 cut(s)	615
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	4 cut(s)	45, 334, 484, 822
SseBI	AGGCCT	1 cut(s)	168
SspMI	CTAG	2 cut(s)	671, 749
SstI	GAGCTC	1 cut(s)	357
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	177, 885
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	1 cut(s)	562
TasI	AATT	4 cut(s)	45, 334, 484, 822
TatI	WGTACW	1 cut(s)	742
TauI	GCSGC	3 cut(s)	117, 126, 305
Tru1I	TTAA	3 cut(s)	525, 765, 809
Tru9I	TTAA	3 cut(s)	525, 765, 809
TscAI	CASTG	1 cut(s)	712
TseI	GCWGC	4 cut(s)	203, 244, 257, 692
TspDTI	ATGAA	5 cut(s)	243, 446, 489, 750, 803
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	712
XapI	RAATTY	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	562
XmnI	GAANNNNTTC	2 cut(s)	396, 498
XspI	CTAG	2 cut(s)	671, 749
ZrmI	AGTACT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.