Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002669

Physical Location & Seq

Genomic Coordinates Forward (+)

32919055 .. 32920443

Gene Structure 1389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGATTCTATTCTTGCTGCATCATTGTTACCTTTGAAATATGTGGCAGTTTCCCATTGCTTCCGTACTGAGGCAGGCGCTGCAGGTACAGCATCAAGGGGTCTGTATCGAGTCCACCAATTCAGCAAGCTGGAGATGTTTATATTATGCCGACCAGAGGAAAGTGACTTCTACCATGAAGAACTCATAAGAATTGAAGAAGACCTATTCTCATCACTAGGATTACACTACAAAACTTTGGACATGGCATCTGGCGATTTAGGTGCGCCTGCTTATCGTAAATTTGATATTGAGGCATGGATGCCTGGCTTAGCAAGATTTGGGGAGTCTGAAATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

114

Amino Acids

12.72

Weight (kDa)

5.11

Isoelectric Point (pI)

59.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	7 - 109	1.4e-18	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11870 AT1G11870 AT1G11870 AT1G11870 AT1G11870 AT1G11870
fragaria_vesca	FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670 FvH4_5g36670
malus_domestica	MD08G1187900.v1.1 MD15G1373800.v1.1
prunus_persica	Prupe.1G522400_v2.0.a1 Prupe.1G522400_v2.0.a1
pyrus_communis	pycom08g16120 pycom15g33480 pycom15g33490
rosa_chinensis	RchiOBHm_Chr7g0242571
rosa_laevigata	RLG00000000891
rosa_multiflora	Rmu_sc0000429.1_g000097
rosa_roxburghii	Rroxscaffold_3G00222620
rosa_rugosa	Rorug07G0315500 Rorug07G0315600 Rorug07G0315700 Rorug07G0315800
rosa_samantha	Rh7AG470900 Rh7BG441200 Rh7CG487800 Rh7DG456400
rosa_wichuraiana	Rw0G005480 Rw7G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	281
AfaI	GTAC	2 cut(s)	67, 88
AfiI	CCNNNNNNNGG	2 cut(s)	70, 157
AgsI	TTSAA	2 cut(s)	37, 197
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
AlwNI	CAGNNNCTG	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	17, 80
ApoI	RAATTY	1 cut(s)	281
AspLEI	GCGC	2 cut(s)	80, 268
BbsI	GAAGAC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	4, 67
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	1 cut(s)	306
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	74
BisI	GCNGC	2 cut(s)	18, 81
BlpI	GCTNAGC	1 cut(s)	310
BlsI	GCNGC	2 cut(s)	19, 82
Bme1390I	CCNGG	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	4 cut(s)	29, 101, 257, 291
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	152
Bpu1102I	GCTNAGC	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 157
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	2 cut(s)	70, 157
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	4, 67
BslI	CCNNNNNNNGG	2 cut(s)	70, 157
Bsp1720I	GCTNAGC	1 cut(s)	310
BspCNI	CTCAG	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	306
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstC8I	GCNNGC	3 cut(s)	76, 128, 270
BstDEI	CTNAG	2 cut(s)	69, 310
BstF5I	GGATG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	2 cut(s)	80, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 89
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	4, 67
BstV2I	GAAGAC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	306
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	3 cut(s)	76, 128, 270
CaiI	CAGNNNCTG	1 cut(s)	80
CfoI	GCGC	2 cut(s)	80, 268
Csp6I	GTAC	2 cut(s)	66, 87
CviAII	CATG	3 cut(s)	176, 244, 297
CviJI	RGCY	2 cut(s)	130, 309
CviKI_1	RGCY	2 cut(s)	130, 309
CviQI	GTAC	2 cut(s)	66, 87
DdeI	CTNAG	2 cut(s)	69, 310
EcoRII	CCWGG	1 cut(s)	304
FaeI	CATG	3 cut(s)	179, 247, 300
FaiI	YATR	7 cut(s)	42, 143, 148, 177, 188, 245, 298
FatI	CATG	3 cut(s)	175, 243, 296
Fnu4HI	GCNGC	2 cut(s)	18, 81
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	2 cut(s)	18, 81
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	2 cut(s)	79, 267
GluI	GCNGC	2 cut(s)	18, 81
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	81
HhaI	GCGC	2 cut(s)	80, 268
Hin1II	CATG	3 cut(s)	179, 247, 300
Hin6I	GCGC	2 cut(s)	78, 266
HinP1I	GCGC	2 cut(s)	78, 266
HinfI	GANTC	3 cut(s)	5, 111, 326
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	331
Hpy8I	GTNNAC	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	20, 83
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 89
HpyF3I	CTNAG	2 cut(s)	69, 310
Hsp92II	CATG	3 cut(s)	179, 247, 300
HspAI	GCGC	2 cut(s)	78, 266
LpnPI	CCDG	8 cut(s)	60, 69, 116, 168, 237, 282, 291, 318
Lsp1109I	GCAGC	2 cut(s)	4, 67
LweI	GCATC	4 cut(s)	29, 101, 257, 291
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	2 cut(s)	27, 164
MboII	GAAGA	3 cut(s)	191, 209, 212
MluCI	AATT	3 cut(s)	119, 192, 281
MlyI	GAGTC	2 cut(s)	120, 335
MnlI	CCTC	3 cut(s)	64, 151, 286
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	2 cut(s)	80, 89
NlaIII	CATG	3 cut(s)	179, 247, 300
NmuCI	GTSAC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	19, 82
PleI	GAGTC	2 cut(s)	119, 334
PpsI	GAGTC	2 cut(s)	119, 334
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	85
PstNI	CAGNNNCTG	1 cut(s)	80
RsaI	GTAC	2 cut(s)	67, 88
RsaNI	GTAC	2 cut(s)	66, 87
SatI	GCNGC	2 cut(s)	18, 81
SchI	GAGTC	2 cut(s)	120, 335
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	5 cut(s)	34, 88, 132, 207, 265
SfaNI	GCATC	4 cut(s)	29, 101, 257, 291
SfcI	CTRYAG	1 cut(s)	81
Sse9I	AATT	3 cut(s)	119, 192, 281
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	304
TaqI	TCGA	1 cut(s)	109
TasI	AATT	3 cut(s)	119, 192, 281
TfiI	GAWTC	1 cut(s)	5
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	2 cut(s)	17, 80
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	1 cut(s)	192
TspGWI	ACGGA	1 cut(s)	53
XapI	RAATTY	1 cut(s)	281
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.