Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009078

Physical Location & Seq

Genomic Coordinates Forward (+)

33267071 .. 33270958

Gene Structure 3888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCCCAATTTACCTTACCAGCCTAATGGGTTTTCGGACATGGATAAGTCCCTCATGACTGACATTGCTGCAAATGCCATGGAAGAGTTGCTTAGGCTTTTGCAGACCAATGAACCCTTGTGGATGAAGTCTTCTACTGATGGAAGGGATGTTCTTAATCTCGAAACCTACAAGAGGATTTTTTCGAGGGCTAATAGTCATTTGATTATTTTGGTTGCCTATCTTACTGCTGCTGCTGCTTCTCCAAACCTTGGTCCTAGAGATGTTGATGATTGGCGAAACAGTTCTCTGCCTGAAAACGCCAACCCCTCAGATTATGAACACAATATGAAGCTATCAATGGACTATATGAGTTATCAAAATATCGGGGGGTCTCGATCGAAACGAACGATCGGTGGTAGCGGAAGCTTTGGGAGGTGGAGCTCCGGATCTGCTACATACCCGTTTCCCTCTGCTGCCGCTATTTCCATCCGATCTCTCAGATTTTGCGGCCCTGGGTTGCAGGTTTTGAGTTGTGATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

175

Amino Acids

19.18

Weight (kDa)

6.09

Isoelectric Point (pI)

63.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17920 AT1G17920 AT1G73360
fragaria_vesca	FvH4_5g18090 FvH4_5g18090
malus_domestica	MD06G1236400.v1.1 MD14G1243300.v1.1
prunus_persica	Prupe.5G240900_v2.0.a1
pyrus_communis	pycom06g21200 pycom06g21210 pycom14g20460 pycom15g33770
rosa_chinensis	RchiOBHm_Chr7g0177521
rosa_laevigata	RLG00000005530
rosa_multiflora	Rmu_ssc0000330.1_g000002
rosa_roxburghii	Rroxscaffold_3G00275800
rosa_rugosa	Rorug06G0407000
rosa_samantha	Rh7AG006300 Rh7BG006200 Rh7CG006700 Rh7DG006300
rosa_wichuraiana	Rw7G000520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	493
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccIII	TCCGGA	1 cut(s)	425
AciI	CCGC	3 cut(s)	402, 459, 489
AclWI	GGATC	1 cut(s)	436
AfiI	CCNNNNNNNGG	2 cut(s)	174, 251
AjnI	CCWGG	1 cut(s)	493
AloI	GAACNNNNNNTCC	2 cut(s)	135, 167
AluBI	AGCT	3 cut(s)	334, 408, 423
AluI	AGCT	3 cut(s)	334, 408, 423
Alw21I	GWGCWC	1 cut(s)	425
Alw26I	GTCTC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	436
Aor13HI	TCCGGA	1 cut(s)	425
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	5 cut(s)	68, 230, 233, 236, 455
Asp700I	GAANNNNTTC	1 cut(s)	283
AspS9I	GGNCC	2 cut(s)	254, 491
AvaII	GGWCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	425
BbvI	GCAGC	5 cut(s)	55, 217, 220, 223, 442
BccI	CCATC	2 cut(s)	134, 476
BciT130I	CCWGG	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	493
BisI	GCNGC	7 cut(s)	69, 231, 234, 237, 456, 459, 490
BlsI	GCNGC	7 cut(s)	70, 232, 235, 238, 457, 460, 491
Bme1390I	CCNGG	1 cut(s)	495
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	2 cut(s)	254, 491
BmrFI	CCNGG	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	378
BsaJI	CCNNGG	4 cut(s)	78, 250, 493, 494
BsaWI	WCCGGW	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 251
Bse3DI	GCAATG	1 cut(s)	63
BseAI	TCCGGA	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	4 cut(s)	78, 250, 493, 494
BseGI	GGATG	3 cut(s)	129, 154, 468
BseLI	CCNNNNNNNGG	2 cut(s)	174, 251
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	324, 493
BseXI	GCAGC	5 cut(s)	55, 217, 220, 223, 442
Bsh1285I	CGRYCG	2 cut(s)	380, 393
BshFI	GGCC	1 cut(s)	492
BsiEI	CGRYCG	2 cut(s)	380, 393
BsiHKAI	GWGCWC	1 cut(s)	425
BsiSI	CCGG	1 cut(s)	426
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	174, 251
BsmAI	GTCTC	1 cut(s)	378
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	492
Bso31I	GGTCTC	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp13I	TCCGGA	1 cut(s)	425
Bsp143I	GATC	4 cut(s)	377, 390, 428, 473
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	3 cut(s)	402, 459, 489
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	2 cut(s)	323, 492
BspEI	TCCGGA	1 cut(s)	425
BspHI	TCATGA	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	1 cut(s)	436
BspTNI	GGTCTC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	63
BssECI	CCNNGG	4 cut(s)	78, 250, 493, 494
BssMI	GATC	4 cut(s)	377, 390, 428, 473
BssT1I	CCWWGG	2 cut(s)	78, 250
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	92, 310, 479
BstDSI	CCRYGG	1 cut(s)	78
BstENI	CCTNNNNNAGG	1 cut(s)	172
BstF5I	GGATG	3 cut(s)	129, 154, 468
BstKTI	GATC	4 cut(s)	380, 393, 431, 476
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	4 cut(s)	377, 390, 428, 473
BstMCI	CGRYCG	2 cut(s)	380, 393
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 236
BstNI	CCWGG	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	493
BstV1I	GCAGC	5 cut(s)	55, 217, 220, 223, 442
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	428
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	492
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	3 cut(s)	129, 154, 468
BveI	ACCTGC	1 cut(s)	493
CciI	TCATGA	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	254, 491
CviAII	CATG	3 cut(s)	40, 55, 79
CviJI	RGCY	7 cut(s)	22, 97, 191, 334, 408, 423, 492
CviKI_1	RGCY	7 cut(s)	22, 97, 191, 334, 408, 423, 492
DdeI	CTNAG	3 cut(s)	92, 310, 479
DpnI	GATC	4 cut(s)	379, 392, 430, 475
DpnII	GATC	4 cut(s)	377, 390, 428, 473
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	423
Eco130I	CCWWGG	2 cut(s)	78, 250
Eco24I	GRGCYC	1 cut(s)	425
Eco31I	GGTCTC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	423
EcoICRI	GAGCTC	1 cut(s)	423
EcoNI	CCTNNNNNAGG	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	78, 250
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	2 cut(s)	78, 250
FaeI	CATG	3 cut(s)	43, 58, 82
FaiI	YATR	8 cut(s)	41, 56, 80, 318, 329, 348, 350, 439
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	3 cut(s)	39, 54, 78
Fnu4HI	GCNGC	7 cut(s)	69, 231, 234, 237, 456, 459, 490
FokI	GGATG	3 cut(s)	136, 161, 455
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	7 cut(s)	69, 231, 234, 237, 456, 459, 490
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	7 cut(s)	69, 231, 234, 237, 456, 459, 490
HaeIII	GGCC	1 cut(s)	492
HapII	CCGG	1 cut(s)	426
Hin1II	CATG	3 cut(s)	43, 58, 82
HindIII	AAGCTT	1 cut(s)	406
HpaII	CCGG	1 cut(s)	426
Hpy188I	TCNGA	4 cut(s)	37, 313, 473, 482
Hpy188III	TCNNGA	4 cut(s)	55, 161, 375, 426
HpyAV	CCTTC	1 cut(s)	138
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	71, 103, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 236
HpyF3I	CTNAG	3 cut(s)	92, 310, 479
Hsp92II	CATG	3 cut(s)	43, 58, 82
Kpn2I	TCCGGA	1 cut(s)	425
Kzo9I	GATC	4 cut(s)	377, 390, 428, 473
LmnI	GCTCC	2 cut(s)	420, 428
LpnPI	CCDG	6 cut(s)	32, 306, 439, 480, 488, 507
Lsp1109I	GCAGC	5 cut(s)	55, 217, 220, 223, 442
MaeI	CTAG	1 cut(s)	258
MalI	GATC	4 cut(s)	379, 392, 430, 475
MboI	GATC	4 cut(s)	377, 390, 428, 473
MboII	GAAGA	2 cut(s)	95, 123
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	1 cut(s)	7
MnlI	CCTC	6 cut(s)	62, 168, 180, 319, 408, 460
MroI	TCCGGA	1 cut(s)	425
MroXI	GAANNNNTTC	1 cut(s)	283
MseI	TTAA	1 cut(s)	156
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	495
MwoI	GCNNNNNNNGC	2 cut(s)	74, 236
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	4 cut(s)	377, 390, 428, 473
NlaIII	CATG	3 cut(s)	43, 58, 82
PagI	TCATGA	1 cut(s)	54
PasI	CCCWGGG	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	2 cut(s)	382, 386
PdmI	GAANNNNTTC	1 cut(s)	283
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	7 cut(s)	70, 232, 235, 238, 457, 460, 491
Ple19I	CGATCG	2 cut(s)	380, 393
Psp124BI	GAGCTC	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	493
PspPI	GGNCC	2 cut(s)	254, 491
PsuI	RGATCY	1 cut(s)	428
PvuI	CGATCG	2 cut(s)	380, 393
SacI	GAGCTC	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	7 cut(s)	69, 231, 234, 237, 456, 459, 490
Sau3AI	GATC	4 cut(s)	377, 390, 428, 473
Sau96I	GGNCC	2 cut(s)	254, 491
ScrFI	CCNGG	1 cut(s)	495
SduI	GDGCHC	1 cut(s)	425
SetI	ASST	8 cut(s)	16, 170, 252, 336, 410, 419, 425, 507
SinI	GGWCC	1 cut(s)	254
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	3 cut(s)	402, 459, 489
SspMI	CTAG	1 cut(s)	258
SstI	GAGCTC	1 cut(s)	425
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	2 cut(s)	78, 250
TaaI	ACNGT	1 cut(s)	284
TaqI	TCGA	4 cut(s)	162, 185, 376, 380
TasI	AATT	1 cut(s)	7
TauI	GCSGC	2 cut(s)	461, 492
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	5 cut(s)	68, 230, 233, 236, 455
TspDTI	ATGAA	4 cut(s)	126, 140, 333, 344
Van91I	CCANNNNNTGG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	254
XagI	CCTNNNNNAGG	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	283
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.