pycom15g34210

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012874
Physical Location & Seq
Reverse (-)
33867030 .. 33869245
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 423 bp
ATGATGTGGGACGAGTGGGACGACACCATTTTCTCCGACGCCGACCAACAACAACAACAACAACAATCCGACCAGGATTCCCACCTCAATTTCGATTTCTTCTCCGACCTCTCCAAACCCAAGGATTACTACAAGATATTGGAAGTGGATTATGATGCCAATGACGACGCCATTCGCTCCAACTACATCCGCCTCGCCTTGAAATGGCATCCGGATAAGCACAAGGACCAGGACAGTGCCACCTCCAGGTTCCAAGAGATAAACGAAGCTTACCAAGTTTTGAGTGATCCAGCGAAGAGAATAGAATATGACAAAAAAGGGATGCTTTACGTCTACGATTATAATATAACAGAGTATCTAAACCGCTACAAAGGTCTTATATTGACGTGCAATGGCCTCGGGATAAGGACTTCAATTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

141

Amino Acids

16.77

Weight (kDa)

4.59

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 42 - 104 1.9e-24 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33735 AT2G33735
fragaria_vesca FvH4_5g35690
malus_domestica MD08G1194000.v1.1 MD15G1382100.v1.1
prunus_persica Prupe.1G528300_v2.0.a1
pyrus_communis pycom08g16690 pycom15g34210
rosa_chinensis RchiOBHm_Chr7g0237331
rosa_laevigata RLG00000001011
rosa_multiflora Rmu_sc0002923.1_g000039
rosa_roxburghii Rroxscaffold_3G00224310
rosa_rugosa Rorug07G0302800
rosa_samantha Rh7AG459900 Rh7BG429800 Rh7CG477200 Rh7DG446500
rosa_wichuraiana Rw7G038090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AccI GTMKAC 1 cut(s) 333
AccIII TCCGGA 1 cut(s) 211
AciI CCGC 2 cut(s) 190, 364
AclWI GGATC 1 cut(s) 281
AcyI GRCGYC 2 cut(s) 39, 168
AfiI CCNNNNNNNGG 2 cut(s) 204, 246
AgsI TTSAA 2 cut(s) 202, 414
AjiI CACGTC 1 cut(s) 387
AjnI CCWGG 3 cut(s) 72, 228, 245
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
AlwI GGATC 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 398
Aor13HI TCCGGA 1 cut(s) 211
AoxI GGCC 1 cut(s) 394
AspS9I GGNCC 1 cut(s) 226
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 226
BcgI CGANNNNNNTGC 2 cut(s) 379, 413
BciT130I CCWGG 3 cut(s) 74, 230, 247
Bme1390I CCNGG 3 cut(s) 74, 230, 247
Bme18I GGWCC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 398
BmgBI CACGTC 1 cut(s) 387
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 3 cut(s) 74, 230, 247
BmsI GCATC 3 cut(s) 145, 217, 312
BpmI CTGGAG 1 cut(s) 229
BsaHI GRCGYC 2 cut(s) 39, 168
BsaJI CCNNGG 2 cut(s) 120, 397
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 246
Bse3DI GCAATG 1 cut(s) 397
BseAI TCCGGA 1 cut(s) 211
BseBI CCWGG 3 cut(s) 74, 230, 247
BseDI CCNNGG 2 cut(s) 120, 397
BseGI GGATG 3 cut(s) 186, 208, 327
BseLI CCNNNNNNNGG 2 cut(s) 204, 246
BseMI GCAATG 1 cut(s) 397
BshFI GGCC 1 cut(s) 396
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 2 cut(s) 23, 32
BslI CCNNNNNNNGG 2 cut(s) 204, 246
BsmFI GGGAC 2 cut(s) 23, 32
BsnI GGCC 1 cut(s) 396
BsoBI CYCGRG 1 cut(s) 398
Bsp13I TCCGGA 1 cut(s) 211
Bsp143I GATC 1 cut(s) 286
BspACI CCGC 2 cut(s) 190, 364
BspANI GGCC 1 cut(s) 396
BspEI TCCGGA 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 251
BspPI GGATC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 397
BssECI CCNNGG 2 cut(s) 120, 397
BssMI GATC 1 cut(s) 286
BssNI GRCGYC 2 cut(s) 39, 168
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 3 cut(s) 74, 230, 247
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 290
BstACI GRCGYC 2 cut(s) 39, 168
BstF5I GGATG 3 cut(s) 186, 208, 327
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstNI CCWGG 3 cut(s) 74, 230, 247
BstSCI CCNGG 3 cut(s) 72, 228, 245
BsuRI GGCC 1 cut(s) 396
BtrI CACGTC 1 cut(s) 387
BtsCI GGATG 3 cut(s) 186, 208, 327
BtsIMutI CAGTG 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 226
CseI GACGC 2 cut(s) 47, 176
CviJI RGCY 2 cut(s) 269, 396
CviKI_1 RGCY 2 cut(s) 269, 396
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
EciI GGCGGA 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 398
EcoRII CCWGG 3 cut(s) 72, 228, 245
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaiI YATR 5 cut(s) 153, 309, 342, 347, 380
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FaqI GGGAC 2 cut(s) 23, 32
FblI GTMKAC 1 cut(s) 333
FokI GGATG 3 cut(s) 173, 195, 334
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 1 cut(s) 396
HapII CCGG 1 cut(s) 212
HgaI GACGC 2 cut(s) 47, 176
Hin1I GRCGYC 2 cut(s) 39, 168
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 3 cut(s) 37, 70, 106
Hpy188III TCNNGA 2 cut(s) 212, 400
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 2 cut(s) 41, 170
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 2 cut(s) 330, 386
HpyCH4V TGCA 1 cut(s) 390
HpySE526I ACGT 2 cut(s) 330, 386
Hsp92I GRCGYC 2 cut(s) 39, 168
Kpn2I TCCGGA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 8 cut(s) 59, 86, 215, 225, 232, 242, 259, 303
LweI GCATC 3 cut(s) 145, 217, 312
MaeII ACGT 2 cut(s) 330, 386
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 2 cut(s) 91, 307
MluCI AATT 2 cut(s) 88, 414
MmeI TCCRAC 4 cut(s) 60, 93, 129, 204
MnlI CCTC 5 cut(s) 95, 119, 203, 253, 407
MroI TCCGGA 1 cut(s) 211
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 3 cut(s) 74, 230, 247
MvaI CCWGG 3 cut(s) 74, 230, 247
NdeII GATC 1 cut(s) 286
NlaIV GGNNCC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PfeI GAWTC 1 cut(s) 77
PsiI TTATAA 1 cut(s) 342
Psp6I CCWGG 3 cut(s) 72, 228, 245
PspGI CCWGG 3 cut(s) 72, 228, 245
PspN4I GGNNCC 1 cut(s) 251
PspPI GGNCC 1 cut(s) 226
Sau3AI GATC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 226
ScrFI CCNGG 3 cut(s) 74, 230, 247
SetI ASST 8 cut(s) 87, 111, 245, 251, 271, 333, 376, 389
SfaNI GCATC 3 cut(s) 145, 217, 312
SinI GGWCC 1 cut(s) 226
Sse9I AATT 2 cut(s) 88, 414
SsiI CCGC 2 cut(s) 190, 364
StyD4I CCNGG 3 cut(s) 72, 228, 245
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 2 cut(s) 333, 389
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 88, 414
TfiI GAWTC 1 cut(s) 77
TscAI CASTG 1 cut(s) 241
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.