pycom15g35810

Methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013179
Physical Location & Seq
Reverse (-)
35900003 .. 35905530
5528 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1035 bp
ATGAGAGGCTTGTACCGGAGGTGCTCGCTATGGAGGACAGGAAGAGAAGCTCCGCACTCACTCTTCTTCTTCTCAAATGCTCTCTGTACCGACACCAACAACATTGATGGGGTTCAAGGCTCCAGGATCAAGGTCTTTGATCGCCACTTCAGACGCAAACAGCTTGATCGAGCTGCTTGGTTGATGCGTTCCAAGGATTCTTTTGTTGATGCTGTTGCTGAGAATCTATTAGATCGCTTGGAGGACTGCAAGAAAACATTTCCAACAGCATTATGTTTGGGAGGCCAATTGGAAGCTGTCAGGCGTTTGTTACATGGTCGCGGTGCCATTGAAAAGCTCATTATGATGTCTGCATCATATGACATGGTAAAACTGTGTAGAAATGCTGAGCGTGAGTTACAAACTGAAAACATTGAAACATCCTTTATGGTTGGTGACGAAGAGTTTTTGCCAGTCAAGGAAAGTTCTGTGGATCTGGTATTAAGCTGCTTGGGCCTTCACTGGACAAATGATCTTCCAGGAGCAATGATACAGTGCAGATTGGCATTGAAGCCAGATGGCCTATTTTTAGCGGCAATTCTTGGTGGAGAAACCTTAAAAGAACTGAGGATAGCATGCACTGTGGCACAAATGGAGCGTGAAGGAGGCATCAGTCCACGAGTATCACCTTTGGCGCAAGTGCGGGATGCAGGCAATCTGTTGACCAGGGCAGGCTTTACCCTTCCAGGTGTTGATGTGGACGAGTTTGTAGTCAGATATCCAAGTGCTCTGGATCTCATAGAACATCTGCGGGCAATGGGTGAAACGAATGCTCTTCTACAAAGGAACACTATTTTAAAGAGAGACACGGCCCTGGCCACTGCAGCAATTTATGATTCAATGTTTGCAACAGAAGATGGCACCATCCCAGCAACCTTCCAGGTGATTTATATGACAGGGTGGAGGGACCATCCATCTCAGCAGAGGGCAAAACGGAGGGGGTCTGCAACTGTATCTTTTCAGGACATCCAGAAGCAATTTGGAAGTGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

345

Amino Acids

38.54

Weight (kDa)

7.59

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_11 PF08241 102 - 190 5.9e-10 Methyltransferase domain
Methyltransf_25 PF13649 110 - 187 1.9e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22800
fragaria_vesca FvH4_5g33060
malus_domestica MD04G1240000.v1.1 MD08G1215200.v1.1 MD15G1399100.v1.1
prunus_persica Prupe.1G530500_v2.0.a1 Prupe.1G530500_v2.0.a1 Prupe.1G530500_v2.0.a1
pyrus_communis pycom08g18630 pycom15g35810
rosa_chinensis RchiOBHm_Chr7g0231231
rosa_laevigata RLG00000001427
rosa_multiflora Rmu_sc0004571.1_g000020
rosa_roxburghii Rroxscaffold_3G00229420
rosa_rugosa Rorug07G0265200
rosa_samantha Rh7BG394200 Rh7CG438300
rosa_wichuraiana Rw7G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 323, 899
AccII CGCG 1 cut(s) 321
AciI CCGC 5 cut(s) 53, 321, 572, 682, 790
AclWI GGATC 3 cut(s) 134, 480, 780
AcoI YGGCCR 1 cut(s) 855
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 2 cut(s) 14, 88
AgsI TTSAA 5 cut(s) 116, 332, 416, 550, 879
AjnI CCWGG 6 cut(s) 122, 517, 704, 724, 852, 918
AluBI AGCT 6 cut(s) 50, 163, 173, 296, 337, 486
AluI AGCT 6 cut(s) 50, 163, 173, 296, 337, 486
Alw21I GWGCWC 2 cut(s) 26, 769
Alw26I GTCTC 2 cut(s) 837, 1022
AlwI GGATC 3 cut(s) 134, 480, 780
AoxI GGCC 5 cut(s) 283, 493, 559, 849, 855
ApeKI GCWGC 3 cut(s) 173, 486, 863
AspLEI GCGC 1 cut(s) 676
AspS9I GGNCC 3 cut(s) 493, 850, 946
AsuHPI GGTGA 4 cut(s) 446, 657, 812, 934
AvaII GGWCC 1 cut(s) 946
BalI TGGCCA 1 cut(s) 857
BanI GGYRCC 2 cut(s) 323, 899
BauI CACGAG 1 cut(s) 657
Bbv12I GWGCWC 2 cut(s) 26, 769
BbvI GCAGC 3 cut(s) 160, 473, 875
BccI CCATC 6 cut(s) 101, 551, 890, 911, 957, 961
BceAI ACGGC 1 cut(s) 864
BciT130I CCWGG 6 cut(s) 124, 519, 706, 726, 854, 920
BcoDI GTCTC 2 cut(s) 837, 1022
BfmI CTRYAG 1 cut(s) 861
BisI GCNGC 4 cut(s) 174, 487, 573, 864
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 4 cut(s) 175, 488, 574, 865
Bme1390I CCNGG 6 cut(s) 124, 519, 706, 726, 854, 920
Bme18I GGWCC 1 cut(s) 946
BmgT120I GGNCC 3 cut(s) 493, 850, 946
BmiI GGNNCC 4 cut(s) 121, 325, 901, 947
BmrFI CCNGG 6 cut(s) 124, 519, 706, 726, 854, 920
BmsI GCATC 5 cut(s) 174, 199, 362, 657, 676
BpmI CTGGAG 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 387
BsaJI CCNNGG 3 cut(s) 192, 705, 852
BsaWI WCCGGW 1 cut(s) 15
Bse1I ACTGG 2 cut(s) 452, 506
Bse3DI GCAATG 2 cut(s) 531, 801
BseBI CCWGG 6 cut(s) 124, 519, 706, 726, 854, 920
BseDI CCNNGG 3 cut(s) 192, 705, 852
BseGI GGATG 5 cut(s) 419, 691, 903, 949, 1005
BseMI GCAATG 2 cut(s) 531, 801
BseMII CTCAG 4 cut(s) 210, 378, 596, 971
BseNI ACTGG 2 cut(s) 452, 506
BseXI GCAGC 3 cut(s) 160, 473, 875
BseYI CCCAGC 1 cut(s) 907
BsgI GTGCAG 1 cut(s) 556
Bsh1236I CGCG 1 cut(s) 321
BshFI GGCC 5 cut(s) 285, 495, 561, 851, 857
BshNI GGYRCC 2 cut(s) 323, 899
BsiHKAI GWGCWC 2 cut(s) 26, 769
BsiSI CCGG 1 cut(s) 16
BslFI GGGAC 1 cut(s) 959
BsmAI GTCTC 2 cut(s) 837, 1022
BsmFI GGGAC 1 cut(s) 959
BsmI GAATGC 1 cut(s) 814
BsnI GGCC 5 cut(s) 285, 495, 561, 851, 857
Bsp1286I GDGCHC 2 cut(s) 26, 769
Bsp143I GATC 7 cut(s) 126, 139, 166, 232, 472, 511, 772
Bsp1720I GCTNAGC 1 cut(s) 387
BspACI CCGC 5 cut(s) 53, 321, 572, 682, 790
BspANI GGCC 5 cut(s) 285, 495, 561, 851, 857
BspCNI CTCAG 4 cut(s) 211, 379, 597, 970
BspFNI CGCG 1 cut(s) 321
BspLI GGNNCC 4 cut(s) 121, 325, 901, 947
BspMAI CTGCAG 1 cut(s) 865
BspPI GGATC 3 cut(s) 134, 480, 780
BspQI GCTCTTC 1 cut(s) 819
BspT107I GGYRCC 2 cut(s) 323, 899
BsrDI GCAATG 2 cut(s) 531, 801
BsrI ACTGG 2 cut(s) 452, 506
BssECI CCNNGG 3 cut(s) 192, 705, 852
BssMI GATC 7 cut(s) 126, 139, 166, 232, 472, 511, 772
BssSI CACGAG 1 cut(s) 657
BssT1I CCWWGG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 657
Bst2UI CCWGG 6 cut(s) 124, 519, 706, 726, 854, 920
Bst4CI ACNGT 4 cut(s) 375, 534, 622, 991
Bst6I CTCTTC 4 cut(s) 37, 68, 435, 819
BstC8I GCNNGC 5 cut(s) 26, 616, 691, 712, 792
BstDEI CTNAG 4 cut(s) 219, 387, 605, 957
BstF5I GGATG 5 cut(s) 419, 691, 903, 949, 1005
BstFNI CGCG 1 cut(s) 321
BstHHI GCGC 1 cut(s) 676
BstKTI GATC 7 cut(s) 129, 142, 169, 235, 475, 514, 775
BstMAI GTCTC 2 cut(s) 837, 1022
BstMBI GATC 7 cut(s) 126, 139, 166, 232, 472, 511, 772
BstMWI GCNNNNNNNGC 2 cut(s) 492, 863
BstNI CCWGG 6 cut(s) 124, 519, 706, 726, 854, 920
BstNSI RCATGY 1 cut(s) 618
BstSCI CCNGG 6 cut(s) 122, 517, 704, 724, 852, 918
BstSFI CTRYAG 1 cut(s) 861
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 3 cut(s) 160, 473, 875
BstX2I RGATCY 2 cut(s) 472, 772
BstYI RGATCY 2 cut(s) 472, 772
BsuRI GGCC 5 cut(s) 285, 495, 561, 851, 857
BtsCI GGATG 5 cut(s) 419, 691, 903, 949, 1005
BtsI GCAGTG 1 cut(s) 858
BtsIMutI CAGTG 4 cut(s) 499, 539, 618, 858
Cac8I GCNNGC 5 cut(s) 26, 616, 691, 712, 792
CfoI GCGC 1 cut(s) 676
Cfr13I GGNCC 3 cut(s) 493, 850, 946
CseI GACGC 1 cut(s) 162
Csp6I GTAC 2 cut(s) 13, 87
CviAII CATG 3 cut(s) 314, 364, 615
CviQI GTAC 2 cut(s) 13, 87
DdeI CTNAG 4 cut(s) 219, 387, 605, 957
DpnI GATC 7 cut(s) 128, 141, 168, 234, 474, 513, 774
DpnII GATC 7 cut(s) 126, 139, 166, 232, 472, 511, 772
DraI TTTAAA 1 cut(s) 837
EaeI YGGCCR 1 cut(s) 855
Eam1104I CTCTTC 4 cut(s) 37, 68, 435, 819
EarI CTCTTC 4 cut(s) 37, 68, 435, 819
Eco130I CCWWGG 1 cut(s) 192
Eco32I GATATC 1 cut(s) 758
Eco47I GGWCC 1 cut(s) 946
Eco57I CTGAAG 1 cut(s) 133
EcoRII CCWGG 6 cut(s) 122, 517, 704, 724, 852, 918
EcoRV GATATC 1 cut(s) 758
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 3 cut(s) 317, 367, 618
FalI AAGNNNNNCTT 1 cut(s) 1015
FaqI GGGAC 1 cut(s) 959
FatI CATG 3 cut(s) 313, 363, 614
FauI CCCGC 2 cut(s) 675, 783
FauNDI CATATG 1 cut(s) 358
Fnu4HI GCNGC 4 cut(s) 174, 487, 573, 864
FokI GGATG 5 cut(s) 406, 698, 890, 936, 992
Fsp4HI GCNGC 4 cut(s) 174, 487, 573, 864
GlaI GCGC 1 cut(s) 675
GluI GCNGC 4 cut(s) 174, 487, 573, 864
GsaI CCCAGC 1 cut(s) 911
GsuI CTGGAG 1 cut(s) 106
HaeIII GGCC 5 cut(s) 285, 495, 561, 851, 857
HapII CCGG 1 cut(s) 16
HgaI GACGC 1 cut(s) 162
HhaI GCGC 1 cut(s) 676
Hin1II CATG 3 cut(s) 317, 367, 618
Hin6I GCGC 1 cut(s) 674
HinP1I GCGC 1 cut(s) 674
HincII GTYRAC 1 cut(s) 702
HindII GTYRAC 1 cut(s) 702
HinfI GANTC 3 cut(s) 197, 223, 875
HpaII CCGG 1 cut(s) 16
HphI GGTGA 4 cut(s) 446, 657, 812, 934
Hpy166II GTNNAC 3 cut(s) 656, 702, 739
Hpy188I TCNGA 2 cut(s) 152, 755
Hpy188III TCNNGA 3 cut(s) 770, 1001, 1009
Hpy8I GTNNAC 3 cut(s) 656, 702, 739
HpyAV CCTTC 4 cut(s) 506, 635, 731, 925
HpyCH4III ACNGT 4 cut(s) 375, 534, 622, 991
HpyCH4V TGCA 8 cut(s) 249, 353, 537, 618, 689, 863, 887, 986
HpyF10VI GCNNNNNNNGC 2 cut(s) 492, 863
HpyF3I CTNAG 4 cut(s) 219, 387, 605, 957
Hsp92II CATG 3 cut(s) 317, 367, 618
HspAI GCGC 1 cut(s) 674
Kzo9I GATC 7 cut(s) 126, 139, 166, 232, 472, 511, 772
LguI GCTCTTC 1 cut(s) 819
LmnI GCTCC 4 cut(s) 55, 125, 521, 634
Lsp1109I GCAGC 3 cut(s) 160, 473, 875
LweI GCATC 5 cut(s) 174, 199, 362, 657, 676
MaeIII GTNAC 3 cut(s) 309, 396, 434
MalI GATC 7 cut(s) 128, 141, 168, 234, 474, 513, 774
MboI GATC 7 cut(s) 126, 139, 166, 232, 472, 511, 772
MboII GAAGA 8 cut(s) 54, 55, 58, 61, 452, 506, 806, 905
MfeI CAATTG 1 cut(s) 287
MflI RGATCY 2 cut(s) 472, 772
MhlI GDGCHC 2 cut(s) 26, 769
MlsI TGGCCA 1 cut(s) 857
MluCI AATT 4 cut(s) 287, 576, 867, 1016
MluNI TGGCCA 1 cut(s) 857
MmeI TCCRAC 1 cut(s) 287
MnlI CCTC 9 cut(s) 12, 27, 235, 275, 600, 638, 936, 957, 969
Mox20I TGGCCA 1 cut(s) 857
MscI TGGCCA 1 cut(s) 857
MseI TTAA 3 cut(s) 482, 596, 836
MslI CAYNNNNRTG 1 cut(s) 344
Msp20I TGGCCA 1 cut(s) 857
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 6 cut(s) 124, 519, 706, 726, 854, 920
MunI CAATTG 1 cut(s) 287
Mva1269I GAATGC 1 cut(s) 814
MvaI CCWGG 6 cut(s) 124, 519, 706, 726, 854, 920
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 492, 863
NdeI CATATG 1 cut(s) 358
NdeII GATC 7 cut(s) 126, 139, 166, 232, 472, 511, 772
NlaIII CATG 3 cut(s) 317, 367, 618
NlaIV GGNNCC 4 cut(s) 121, 325, 901, 947
NmuCI GTSAC 1 cut(s) 434
NspI RCATGY 1 cut(s) 618
PaeI GCATGC 1 cut(s) 618
PciSI GCTCTTC 1 cut(s) 819
PctI GAATGC 1 cut(s) 814
PfeI GAWTC 3 cut(s) 197, 223, 875
PfoI TCCNGGA 2 cut(s) 122, 517
PkrI GCNGC 4 cut(s) 175, 488, 574, 865
Psp6I CCWGG 6 cut(s) 122, 517, 704, 724, 852, 918
PspFI CCCAGC 1 cut(s) 907
PspGI CCWGG 6 cut(s) 122, 517, 704, 724, 852, 918
PspN4I GGNNCC 4 cut(s) 121, 325, 901, 947
PspPI GGNCC 3 cut(s) 493, 850, 946
PstI CTGCAG 1 cut(s) 865
PsuI RGATCY 2 cut(s) 472, 772
RsaI GTAC 2 cut(s) 14, 88
RsaNI GTAC 2 cut(s) 13, 87
RseI CAYNNNNRTG 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 819
SaqAI TTAA 3 cut(s) 482, 596, 836
SatI GCNGC 4 cut(s) 174, 487, 573, 864
Sau3AI GATC 7 cut(s) 126, 139, 166, 232, 472, 511, 772
Sau96I GGNCC 3 cut(s) 493, 850, 946
ScrFI CCNGG 6 cut(s) 124, 519, 706, 726, 854, 920
SduI GDGCHC 2 cut(s) 26, 769
SfaNI GCATC 5 cut(s) 174, 199, 362, 657, 676
SfcI CTRYAG 1 cut(s) 861
SinI GGWCC 1 cut(s) 946
SmiMI CAYNNNNRTG 1 cut(s) 344
SphI GCATGC 1 cut(s) 618
Sse9I AATT 4 cut(s) 287, 576, 867, 1016
SsiI CCGC 5 cut(s) 53, 321, 572, 682, 790
StyD4I CCNGG 6 cut(s) 122, 517, 704, 724, 852, 918
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 4 cut(s) 375, 534, 622, 991
TaqI TCGA 1 cut(s) 169
TasI AATT 4 cut(s) 287, 576, 867, 1016
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 3 cut(s) 197, 223, 875
Tru1I TTAA 3 cut(s) 482, 596, 836
Tru9I TTAA 3 cut(s) 482, 596, 836
TscAI CASTG 4 cut(s) 506, 539, 625, 865
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 3 cut(s) 173, 486, 863
Tsp45I GTSAC 1 cut(s) 434
TspGWI ACGGA 1 cut(s) 988
TspRI CASTG 4 cut(s) 506, 539, 625, 865
VpaK11BI GGWCC 1 cut(s) 946
XceI RCATGY 1 cut(s) 618
XcmI CCANNNNNNNNNTGG 1 cut(s) 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.