Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004311

Physical Location & Seq

Genomic Coordinates Forward (+)

36102429 .. 36103438

Gene Structure 1010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGCTCACAAAAAGAATAACCACTCTCAACGAACCATACAAATTGGAAATTTTGGATAGTATTAAAGAAGATCCCATTACCATATATCATATTGGTGATGAATGGTGGGACGTAAGTGCGGGGCCCCATGTTGAAAAAACTGGAAATATTAACAGAAAAGCTGTCGAACTTGAGTCTATTGCTGGTGCCTGCTGGAGAGGAGATGAAAAGAAACCGATGCTGCACAGGATCTATGGCACTGCATGGGAGAGTGAAGATCAATTGAAGGCATATCTTCATTTCAAAGAGGAAGCTAAACGTCGAGATCACAGGCGCCTTGGTCAAGTTCTTGACCTGTTTTCTATACAGGTGCTTTCAAGTGACAACCCCAACTATGGATGCATGCTGCCACTGGCAACTAAAAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon tRNA-synt_2b tRNA_SAD

Protein Analysis

138

Amino Acids

15.86

Weight (kDa)

6.97

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_SAD	PF07973	27 - 79	2e-09	Threonyl and Alanyl tRNA synthetase second additional domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04842 AT2G04842
fragaria_vesca	FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340
malus_domestica	MD05G1333800.v1.1 MD09G1120400.v1.1 MD17G1111100.v1.1
prunus_persica	Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1
pyrus_communis	pycom05g23910 pycom05g24220 pycom05g30420 pycom09g04510 pycom15g36000 pycom17g10340
rosa_chinensis	RchiOBHm_Chr2g0156891
rosa_laevigata	RLG00000020950
rosa_multiflora	Rmu_ssc0000408.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092610
rosa_rugosa	Rorug02G0456900
rosa_samantha	Rh2AG522600 Rh2BG535900 Rh2CG507500 Rh2DG544900
rosa_wichuraiana	Rw2G043160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	188, 315
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	2 cut(s)	68, 239
AcsI	RAATTY	2 cut(s)	51, 408
AcyI	GRCGYC	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	4 cut(s)	137, 268, 286, 360
AluBI	AGCT	3 cut(s)	7, 164, 296
AluI	AGCT	3 cut(s)	7, 164, 296
AlwI	GGATC	2 cut(s)	68, 239
AoxI	GGCC	1 cut(s)	125
ApaI	GGGCCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	223, 388
ApoI	RAATTY	2 cut(s)	51, 408
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	2 cut(s)	125, 126
AsuHPI	GGTGA	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	129
BanI	GGYRCC	2 cut(s)	188, 315
BanII	GRGCYC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	210, 375
BfoI	RGCGCY	1 cut(s)	319
BisI	GCNGC	2 cut(s)	224, 389
BlsI	GCNGC	2 cut(s)	225, 390
BmgT120I	GGNCC	2 cut(s)	125, 126
BmiI	GGNNCC	5 cut(s)	126, 127, 128, 190, 317
BmsI	GCATC	2 cut(s)	210, 371
BpmI	CTGGAG	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse1I	ACTGG	2 cut(s)	148, 399
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	386
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseNI	ACTGG	2 cut(s)	148, 399
BseRI	GAGGAG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	210, 375
BsgI	GTGCAG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	127
BshNI	GGYRCC	2 cut(s)	188, 315
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	127
Bsp120I	GGGCCC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	73, 231, 259, 307
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	127
BspLI	GGNNCC	5 cut(s)	126, 127, 128, 190, 317
BspPI	GGATC	2 cut(s)	68, 239
BspT107I	GGYRCC	2 cut(s)	188, 315
BsrI	ACTGG	2 cut(s)	148, 399
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	4 cut(s)	73, 231, 259, 307
BssNI	GRCGYC	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	319
BstACI	GRCGYC	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	193, 386
BstF5I	GGATG	1 cut(s)	386
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	4 cut(s)	76, 234, 262, 310
BstMBI	GATC	4 cut(s)	73, 231, 259, 307
BstNSI	RCATGY	1 cut(s)	388
BstSLI	GKGCMC	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	210, 375
BstX2I	RGATCY	2 cut(s)	73, 231
BstYI	RGATCY	2 cut(s)	73, 231
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	386
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	240, 392
Cac8I	GCNNGC	2 cut(s)	193, 386
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	2 cut(s)	125, 126
CviAII	CATG	3 cut(s)	131, 246, 385
CviJI	RGCY	4 cut(s)	7, 127, 164, 296
CviKI_1	RGCY	4 cut(s)	7, 127, 164, 296
DinI	GGCGCC	1 cut(s)	317
DpnI	GATC	4 cut(s)	75, 233, 261, 309
DpnII	GATC	4 cut(s)	73, 231, 259, 307
Eco130I	CCWWGG	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	129
EcoO109I	RGGNCCY	2 cut(s)	125, 126
EcoT14I	CCWWGG	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	129
EgeI	GGCGCC	1 cut(s)	317
EheI	GGCGCC	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	3 cut(s)	134, 249, 388
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	3 cut(s)	130, 245, 384
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	224, 389
FokI	GGATG	1 cut(s)	393
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	2 cut(s)	224, 389
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	2 cut(s)	224, 389
GsuI	CTGGAG	1 cut(s)	217
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	3 cut(s)	134, 249, 388
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	1 cut(s)	176
HphI	GGTGA	1 cut(s)	110
Hpy188III	TCNNGA	2 cut(s)	305, 332
Hpy99I	CGWCG	1 cut(s)	306
HpyAV	CCTTC	1 cut(s)	262
HpyCH4IV	ACGT	2 cut(s)	114, 301
HpyCH4V	TGCA	3 cut(s)	226, 245, 384
HpySE526I	ACGT	2 cut(s)	114, 301
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	3 cut(s)	134, 249, 388
HspAI	GCGC	1 cut(s)	316
KasI	GGCGCC	1 cut(s)	315
Kzo9I	GATC	4 cut(s)	73, 231, 259, 307
LpnPI	CCDG	9 cut(s)	129, 171, 181, 205, 214, 298, 335, 350, 380
Lsp1109I	GCAGC	2 cut(s)	210, 375
LweI	GCATC	2 cut(s)	210, 371
MaeII	ACGT	2 cut(s)	114, 301
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	4 cut(s)	75, 233, 261, 309
MboI	GATC	4 cut(s)	73, 231, 259, 307
MboII	GAAGA	3 cut(s)	83, 269, 269
MfeI	CAATTG	1 cut(s)	263
MflI	RGATCY	2 cut(s)	73, 231
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	4 cut(s)	44, 51, 263, 408
Mly113I	GGCGCC	1 cut(s)	316
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	2 cut(s)	194, 283
Mph1103I	ATGCAT	1 cut(s)	386
MseI	TTAA	3 cut(s)	66, 153, 412
MslI	CAYNNNNRTG	1 cut(s)	96
MunI	CAATTG	1 cut(s)	263
NarI	GGCGCC	1 cut(s)	316
NdeII	GATC	4 cut(s)	73, 231, 259, 307
NlaIII	CATG	3 cut(s)	134, 249, 388
NlaIV	GGNNCC	5 cut(s)	126, 127, 128, 190, 317
NmuCI	GTSAC	1 cut(s)	362
NsiI	ATGCAT	1 cut(s)	386
NspI	RCATGY	1 cut(s)	388
PaeI	GCATGC	1 cut(s)	388
PkrI	GCNGC	2 cut(s)	225, 390
PleI	GAGTC	1 cut(s)	184
PluTI	GGCGCC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	184
PspN4I	GGNNCC	5 cut(s)	126, 127, 128, 190, 317
PspOMI	GGGCCC	1 cut(s)	125
PspPI	GGNCC	2 cut(s)	125, 126
PsuI	RGATCY	2 cut(s)	73, 231
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	66, 153, 412
SatI	GCNGC	2 cut(s)	224, 389
Sau3AI	GATC	4 cut(s)	73, 231, 259, 307
Sau96I	GGNCC	2 cut(s)	125, 126
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	7 cut(s)	9, 117, 166, 298, 304, 339, 354
SfaNI	GCATC	2 cut(s)	210, 371
SfoI	GGCGCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SphI	GCATGC	1 cut(s)	388
Sse9I	AATT	4 cut(s)	44, 51, 263, 408
SsiI	CCGC	1 cut(s)	122
SspDI	GGCGCC	1 cut(s)	315
SspI	AATATT	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	319
TaiI	ACGT	2 cut(s)	117, 304
TaqI	TCGA	2 cut(s)	168, 304
TasI	AATT	4 cut(s)	44, 51, 263, 408
Tru1I	TTAA	3 cut(s)	66, 153, 412
Tru9I	TTAA	3 cut(s)	66, 153, 412
TscAI	CASTG	2 cut(s)	247, 399
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	2 cut(s)	223, 388
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	4 cut(s)	17, 117, 222, 269
TspRI	CASTG	2 cut(s)	247, 399
XapI	RAATTY	2 cut(s)	51, 408
XceI	RCATGY	1 cut(s)	388
Zsp2I	ATGCAT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.