pycom15g36460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0009408
Physical Location & Seq
Forward (+)
36457229 .. 36458859
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGATGACCAAACTCTCCATGTCTTGCTCTTGCAACACTAGTACTACTCTCAGTCTGATTCCCAACATTCCTCCACCTGCACTTCCACCAATTAGTCCTCACCAGCTTGCTCCAATCCTACTGAAAACAAGCATACAGCACAGGCCTAGGGCAGTTGCAGTTTTCGCTGCAAAATCTGGAGGATTTCCACTCAACTCGTTCTTGAAAAAGTGTGAAAGCTGTGGAGGTAAAGGTGCAATTGAATGCCAGGGATGCAAGGGGACGGGAAGGAATAAGAAGAATGGAAATATTTTTGAGCGATGGAAGTGTTTTGATTGCCAAGGATTCGGAATGAAGGGTTGCCCCAGCTGTGGACAAGGAGGACTAACCCCAGAACAAAGAGGAGAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

13.84

Weight (kDa)

9.47

Isoelectric Point (pI)

58.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 85
Acc36I ACCTGC 1 cut(s) 85
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 2 cut(s) 205, 242
AhlI ACTAGT 1 cut(s) 38
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 3 cut(s) 106, 219, 348
AluI AGCT 3 cut(s) 106, 219, 348
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 167
AspA2I CCTAGG 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 92
AvrII CCTAGG 1 cut(s) 146
BbvI GCAGC 1 cut(s) 154
BccI CCATC 1 cut(s) 294
BciT130I CCWGG 1 cut(s) 248
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 2 cut(s) 39, 147
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 1 cut(s) 168
BlnI CCTAGG 1 cut(s) 146
BlsI GCNGC 1 cut(s) 169
BmcAI AGTACT 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 198
BsaJI CCNNGG 3 cut(s) 146, 247, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 350
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 3 cut(s) 146, 247, 319
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMII CTCAG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 154
BseYI CCCAGC 1 cut(s) 344
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 1 cut(s) 145
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 274
BsmI GAATGC 1 cut(s) 248
BsnI GGCC 1 cut(s) 145
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 85
BssECI CCNNGG 3 cut(s) 146, 247, 319
BssT1I CCWWGG 2 cut(s) 146, 319
Bst2UI CCWGG 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 257
BstMWI GCNNNNNNNGC 2 cut(s) 164, 252
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 145
BtgZI GCGATG 1 cut(s) 313
BtsCI GGATG 1 cut(s) 257
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 108
Csp6I GTAC 1 cut(s) 42
CviAII CATG 1 cut(s) 19
CviJI RGCY 4 cut(s) 106, 145, 219, 348
CviKI_1 RGCY 4 cut(s) 106, 145, 219, 348
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 1 cut(s) 50
Eco130I CCWWGG 2 cut(s) 146, 319
Eco147I AGGCCT 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 2 cut(s) 146, 319
ErhI CCWWGG 2 cut(s) 146, 319
FaeI CATG 1 cut(s) 22
FaiI YATR 2 cut(s) 20, 134
FaqI GGGAC 1 cut(s) 274
FatI CATG 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 2 cut(s) 39, 147
GluI GCNGC 1 cut(s) 168
GsaI CCCAGC 1 cut(s) 348
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 145
Hin1II CATG 1 cut(s) 22
HinfI GANTC 2 cut(s) 58, 324
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 353
Hpy188I TCNGA 2 cut(s) 57, 329
Hpy188III TCNNGA 2 cut(s) 177, 202
Hpy8I GTNNAC 1 cut(s) 353
HpyAV CCTTC 2 cut(s) 261, 328
HpyCH4V TGCA 6 cut(s) 33, 80, 158, 170, 236, 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 252
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 1 cut(s) 22
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 8 cut(s) 90, 116, 127, 162, 233, 260, 358, 384
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 242
MaeI CTAG 2 cut(s) 39, 147
MboII GAAGA 1 cut(s) 289
MfeI CAATTG 1 cut(s) 237
MluCI AATT 2 cut(s) 90, 237
MnlI CCTC 6 cut(s) 81, 108, 173, 218, 353, 374
MspA1I CMGCKG 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 248
MunI CAATTG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 164, 252
NlaIII CATG 1 cut(s) 22
PaqCI CACCTGC 1 cut(s) 85
PceI AGGCCT 1 cut(s) 145
PctI GAATGC 1 cut(s) 248
PfeI GAWTC 2 cut(s) 58, 324
PkrI GCNGC 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 344
PspGI CCWGG 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 348
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SatI GCNGC 1 cut(s) 168
ScaI AGTACT 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 248
SetI ASST 6 cut(s) 79, 108, 221, 229, 235, 350
SfaNI GCATC 1 cut(s) 242
SpeI ACTAGT 1 cut(s) 38
Sse9I AATT 2 cut(s) 90, 237
SseBI AGGCCT 1 cut(s) 145
SspI AATATT 1 cut(s) 289
SspMI CTAG 2 cut(s) 39, 147
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 2 cut(s) 146, 319
TasI AATT 2 cut(s) 90, 237
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 2 cut(s) 58, 324
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 347
XmaJI CCTAGG 1 cut(s) 146
XspI CTAG 2 cut(s) 39, 147
ZrmI AGTACT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.