Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012625

Physical Location & Seq

Genomic Coordinates Forward (+)

36661955 .. 36662743

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCTATTGGTAGAGCTTATTGTAAGACCGGCATCTTAAACGATAAGCTTTATGTTGTTGGAGGTGTTACAAGGGGTCACGGTGGATTGATCCCTCTTCAATCAGCTGAAGTATTTGATCCAAAGACAGGTGTGTGGTCCCAATTACCAAGCATGCCTTTTACGAAAGCTCAGGCGTTACCAACTGCATTTTTGGCTGATCTGCTGAAGCCTATTGCTACCGGAATGACTTCATACAGGGGAAGGTTGTTTGTTCCACAGAGTTTGTACTGCTGGCCCTTTTTTGTTGACGTTGGAGGAGAGGTTTATGATCCAGAGGCAAATTCATGGGTTGAAATGCCAACTGGCATGGGAGAGGGTTGGCCTGCAAGGCAGGCAGGGACGAAAATGAGTGTCACAGTTGATGGCGAATTGTATGCATTGGATCCTTCTAGTTCTCTTGACAGTGCAAAGATCAAGGTATATGATTACCAAGCTGATGCCTGGAAAGTTGTTGCAGAAGATGTTCCAATTCGTGACTTCACTGAATCAGAGTCTCCCTATTTGCTTGCTGGTTTGCTGGGGAAGCTTCATGTGATCACAAGGGATGCAAATAACAACATTGCTGTTCTGCAGGCTTCTGTGCCGGACCATTTTGCGTCGATCTCAGTAGCTTCATCCTCATCGCTCAATGACCCCCATGAAGATGTTGAACGACCAGCAGAATCAGAACGAGATCTTTGGAAAGTAATTGCCACAAGGAGTGCACGGGCTGCTGAACTGGTTAACTGTCTAGTCCTTGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

263

Amino Acids

28.47

Weight (kDa)

4.87

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_1	PF01344	5 - 53	3.2e-12	Kelch motif
Kelch_2	PF07646	5 - 53	8.2e-06	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012625)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30861 FvH4_5g30861
malus_domestica	MD08G1221400.v1.1 MD15G1412100.v1.1
prunus_persica	Prupe.1G558500_v2.0.a1 Prupe.1G558500_v2.0.a1
pyrus_communis	pycom08g19200 pycom15g36690 pycom15g36700
rosa_chinensis	RchiOBHm_Chr7g0226051
rosa_laevigata	RLG00000001769
rosa_multiflora	Rmu_sc0004200.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233290
rosa_rugosa	Rorug07G0234400
rosa_samantha	Rh7AG368600 Rh7BG368700 Rh7CG387200 Rh7DG379800
rosa_wichuraiana	Rw0G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	85, 113, 305, 419, 432
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	2 cut(s)	129, 227
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	101, 335, 692
AjnI	CCWGG	1 cut(s)	482
AluBI	AGCT	7 cut(s)	17, 49, 107, 170, 476, 568, 653
AluI	AGCT	7 cut(s)	17, 49, 107, 170, 476, 568, 653
Alw21I	GWGCWC	1 cut(s)	748
Alw26I	GTCTC	1 cut(s)	540
Alw44I	GTGCAC	1 cut(s)	744
AlwI	GGATC	5 cut(s)	85, 113, 305, 419, 432
AoxI	GGCC	2 cut(s)	275, 362
ApaLI	GTGCAC	1 cut(s)	744
ApeKI	GCWGC	1 cut(s)	752
ApoI	RAATTY	1 cut(s)	322
Asp700I	GAANNNNTTC	2 cut(s)	229, 504
AspS9I	GGNCC	3 cut(s)	138, 276, 628
AvaII	GGWCC	2 cut(s)	138, 628
BaeGI	GKGCMC	1 cut(s)	748
BamHI	GGATCC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	748
BbvI	GCAGC	1 cut(s)	739
BccI	CCATC	1 cut(s)	398
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	1 cut(s)	484
BclI	TGATCA	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	2 cut(s)	432, 773
BfmI	CTRYAG	1 cut(s)	611
BglI	GCCNNNNNGGC	1 cut(s)	370
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	1 cut(s)	753
BlsI	GCNGC	1 cut(s)	754
Bme1390I	CCNGG	1 cut(s)	484
Bme18I	GGWCC	2 cut(s)	138, 628
BmgT120I	GGNCC	3 cut(s)	138, 276, 628
BmiI	GGNNCC	2 cut(s)	140, 426
BmrFI	CCNGG	1 cut(s)	484
BmsI	GCATC	3 cut(s)	42, 469, 577
Bpu10I	CCTNAGC	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	349, 765
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	484
BseGI	GGATG	2 cut(s)	592, 656
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	2 cut(s)	185, 660
BseNI	ACTGG	2 cut(s)	349, 765
BseRI	GAGGAG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	748
BseXI	GCAGC	1 cut(s)	739
BseYI	CCCAGC	1 cut(s)	559
BshFI	GGCC	2 cut(s)	277, 364
BsiHKAI	GWGCWC	1 cut(s)	748
BsiSI	CCGG	3 cut(s)	30, 222, 626
BslFI	GGGAC	2 cut(s)	124, 394
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	540
BsmFI	GGGAC	2 cut(s)	124, 394
BsnI	GGCC	2 cut(s)	277, 364
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp143I	GATC	9 cut(s)	90, 118, 199, 310, 424, 453, 576, 642, 715
BspANI	GGCC	2 cut(s)	277, 364
BspCNI	CTCAG	2 cut(s)	184, 659
BspLI	GGNNCC	2 cut(s)	140, 426
BspMAI	CTGCAG	1 cut(s)	615
BspPI	GGATC	5 cut(s)	85, 113, 305, 419, 432
BsrDI	GCAATG	1 cut(s)	600
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	349, 765
BssAI	RCCGGY	1 cut(s)	29
BssMI	GATC	9 cut(s)	90, 118, 199, 310, 424, 453, 576, 642, 715
Bst2UI	CCWGG	1 cut(s)	484
Bst4CI	ACNGT	4 cut(s)	83, 400, 446, 770
Bst6I	CTCTTC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstC8I	GCNNGC	6 cut(s)	155, 275, 366, 375, 549, 615
BstDEI	CTNAG	2 cut(s)	171, 646
BstF5I	GGATG	2 cut(s)	592, 656
BstKTI	GATC	9 cut(s)	93, 121, 202, 313, 427, 456, 579, 645, 718
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	9 cut(s)	90, 118, 199, 310, 424, 453, 576, 642, 715
BstMWI	GCNNNNNNNGC	5 cut(s)	194, 370, 374, 565, 752
BstNI	CCWGG	1 cut(s)	484
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	482
BstSFI	CTRYAG	1 cut(s)	611
BstSLI	GKGCMC	1 cut(s)	748
BstV1I	GCAGC	1 cut(s)	739
BstX2I	RGATCY	2 cut(s)	424, 715
BstYI	RGATCY	2 cut(s)	424, 715
BsuRI	GGCC	2 cut(s)	277, 364
BtgZI	GCGATG	1 cut(s)	648
BtsCI	GGATG	2 cut(s)	592, 656
BtsIMutI	CAGTG	2 cut(s)	451, 522
Cac8I	GCNNGC	6 cut(s)	155, 275, 366, 375, 549, 615
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	3 cut(s)	138, 276, 628
CseI	GACGC	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	268
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviAII	CATG	5 cut(s)	154, 327, 349, 572, 680
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	2 cut(s)	171, 646
DpnI	GATC	9 cut(s)	92, 120, 201, 312, 426, 455, 578, 644, 717
DpnII	GATC	9 cut(s)	90, 118, 199, 310, 424, 453, 576, 642, 715
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco47I	GGWCC	2 cut(s)	138, 628
Eco57I	CTGAAG	2 cut(s)	129, 227
EcoRII	CCWGG	1 cut(s)	482
EcoT22I	ATGCAT	1 cut(s)	421
FaeI	CATG	5 cut(s)	157, 330, 352, 575, 683
FalI	AAGNNNNNCTT	2 cut(s)	142, 174
FaqI	GGGAC	2 cut(s)	124, 394
FatI	CATG	5 cut(s)	153, 326, 348, 571, 679
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	1 cut(s)	753
FokI	GGATG	2 cut(s)	599, 643
Fsp4HI	GCNGC	1 cut(s)	753
FspBI	CTAG	2 cut(s)	432, 773
GluI	GCNGC	1 cut(s)	753
GsaI	CCCAGC	1 cut(s)	563
HaeIII	GGCC	2 cut(s)	277, 364
HapII	CCGG	3 cut(s)	30, 222, 626
HgaI	GACGC	1 cut(s)	627
Hin1II	CATG	5 cut(s)	157, 330, 352, 575, 683
HincII	GTYRAC	2 cut(s)	289, 766
HindII	GTYRAC	2 cut(s)	289, 766
HindIII	AAGCTT	2 cut(s)	47, 566
HinfI	GANTC	3 cut(s)	527, 533, 704
HpaI	GTTAAC	1 cut(s)	766
HpaII	CCGG	3 cut(s)	30, 222, 626
Hpy166II	GTNNAC	3 cut(s)	289, 746, 766
Hpy188I	TCNGA	2 cut(s)	532, 709
Hpy188III	TCNNGA	3 cut(s)	314, 440, 515
Hpy8I	GTNNAC	3 cut(s)	289, 746, 766
Hpy99I	CGWCG	1 cut(s)	643
HpyAV	CCTTC	2 cut(s)	237, 438
HpyCH4III	ACNGT	4 cut(s)	83, 400, 446, 770
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	8 cut(s)	188, 368, 419, 449, 497, 590, 613, 746
HpyF10VI	GCNNNNNNNGC	5 cut(s)	194, 370, 374, 565, 752
HpyF3I	CTNAG	2 cut(s)	171, 646
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	5 cut(s)	157, 330, 352, 575, 683
Ksp22I	TGATCA	1 cut(s)	576
KspAI	GTTAAC	1 cut(s)	766
Kzo9I	GATC	9 cut(s)	90, 118, 199, 310, 424, 453, 576, 642, 715
Lsp1109I	GCAGC	1 cut(s)	739
LweI	GCATC	3 cut(s)	42, 469, 577
MaeI	CTAG	2 cut(s)	432, 773
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	5 cut(s)	67, 77, 177, 394, 515
MalI	GATC	9 cut(s)	92, 120, 201, 312, 426, 455, 578, 644, 717
MboI	GATC	9 cut(s)	90, 118, 199, 310, 424, 453, 576, 642, 715
MboII	GAAGA	3 cut(s)	89, 512, 695
MflI	RGATCY	2 cut(s)	424, 715
MhlI	GDGCHC	1 cut(s)	748
MluCI	AATT	5 cut(s)	143, 322, 410, 510, 729
MlyI	GAGTC	1 cut(s)	542
MmeI	TCCRAC	2 cut(s)	40, 274
MnlI	CCTC	7 cut(s)	56, 105, 290, 295, 310, 349, 670
Mph1103I	ATGCAT	1 cut(s)	421
MroXI	GAANNNNTTC	2 cut(s)	229, 504
MseI	TTAA	2 cut(s)	38, 765
MslI	CAYNNNNRTG	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	3 cut(s)	30, 222, 626
MspR9I	CCNGG	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	484
MwoI	GCNNNNNNNGC	5 cut(s)	194, 370, 374, 565, 752
NdeII	GATC	9 cut(s)	90, 118, 199, 310, 424, 453, 576, 642, 715
NlaIII	CATG	5 cut(s)	157, 330, 352, 575, 683
NlaIV	GGNNCC	2 cut(s)	140, 426
NmuCI	GTSAC	3 cut(s)	77, 394, 515
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	1 cut(s)	157
PaeI	GCATGC	1 cut(s)	157
PdmI	GAANNNNTTC	2 cut(s)	229, 504
PfeI	GAWTC	2 cut(s)	527, 704
PkrI	GCNGC	1 cut(s)	754
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	482
PspN4I	GGNNCC	2 cut(s)	140, 426
PspPI	GGNCC	3 cut(s)	138, 276, 628
PstI	CTGCAG	1 cut(s)	615
PsuI	RGATCY	2 cut(s)	424, 715
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	684
SaqAI	TTAA	2 cut(s)	38, 765
SatI	GCNGC	1 cut(s)	753
Sau3AI	GATC	9 cut(s)	90, 118, 199, 310, 424, 453, 576, 642, 715
Sau96I	GGNCC	3 cut(s)	138, 276, 628
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	1 cut(s)	484
SduI	GDGCHC	1 cut(s)	748
SfaNI	GCATC	3 cut(s)	42, 469, 577
SfcI	CTRYAG	1 cut(s)	611
SinI	GGWCC	2 cut(s)	138, 628
SmiMI	CAYNNNNRTG	1 cut(s)	684
SphI	GCATGC	1 cut(s)	157
Sse9I	AATT	5 cut(s)	143, 322, 410, 510, 729
SspMI	CTAG	2 cut(s)	432, 773
StyD4I	CCNGG	1 cut(s)	482
TaaI	ACNGT	4 cut(s)	83, 400, 446, 770
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	1 cut(s)	641
TasI	AATT	5 cut(s)	143, 322, 410, 510, 729
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	527, 704
Tru1I	TTAA	2 cut(s)	38, 765
Tru9I	TTAA	2 cut(s)	38, 765
TscAI	CASTG	2 cut(s)	451, 529
TseFI	GTSAC	3 cut(s)	77, 394, 515
TseI	GCWGC	1 cut(s)	752
Tsp45I	GTSAC	3 cut(s)	77, 394, 515
TspDTI	ATGAA	5 cut(s)	222, 315, 560, 645, 696
TspRI	CASTG	2 cut(s)	451, 529
VneI	GTGCAC	1 cut(s)	744
VpaK11BI	GGWCC	2 cut(s)	138, 628
XapI	RAATTY	1 cut(s)	322
XceI	RCATGY	1 cut(s)	157
XmnI	GAANNNNTTC	2 cut(s)	229, 504
XspI	CTAG	2 cut(s)	432, 773
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.