pycom15g37090

Tubby-like F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0007029
Physical Location & Seq
Forward (+)
37017324 .. 37017833
510 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 510 bp
ATGCATTGCATCATGCATTCTATCCCGGTCTCATCTCTTGATGCAGGAAGTACTGTCCCTGGCCAACCGGAACTCCTTACCCGCGCCCTGGAAGACTCGTTCCGAAGTATCTCATTCTCAAAGTCTCTTGACCACTCAGTTGAATTCAGCAGTTCACGATTTTCTGAAATCGCTGGACCCCGAGACGATGAGGATAGCAAGACAAGACCCTTGGTTTTGAAAAACAAGCCGCCCCGATGGCATGAACAGTTACAGTGCTGGTGCCTGAACTTCCGAGGCCGGGTAACTGTTGCTTCTGTTAAGAACTTTCAGTTGATTGCTGCTACTCAGCCTGCTGCCGGTGCACCCACTCCATCACAGCCAGCGCCACCAGAGCTCGACAAGATAATCTTGCAGTTTGGCAAGGTTGGTAAAGATATGTTCACGATGGATTATCGTTATCCTTTATCTGCATTTCAGGCTTTTGCCATCTGCTTGAGCAGCTTTGACACTAAATTGGCTTGTGAATAG

Protein Analysis

170

Amino Acids

18.74

Weight (kDa)

6.89

Isoelectric Point (pI)

57.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tub PF01167 1 - 164 1.6e-53 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 261
AccII CGCG 1 cut(s) 84
AciI CCGC 2 cut(s) 82, 230
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 1 cut(s) 143
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 3 cut(s) 88, 280, 338
AgsI TTSAA 2 cut(s) 143, 220
AjnI CCWGG 2 cut(s) 58, 87
AloI GAACNNNNNNTCC 2 cut(s) 83, 115
AluBI AGCT 2 cut(s) 376, 483
AluI AGCT 2 cut(s) 376, 483
Alw21I GWGCWC 2 cut(s) 346, 378
Alw26I GTCTC 3 cut(s) 34, 129, 177
Alw44I GTGCAC 1 cut(s) 342
Ama87I CYCGRG 1 cut(s) 180
AoxI GGCC 2 cut(s) 61, 277
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 3 cut(s) 320, 335, 480
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 2 cut(s) 86, 367
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 2 cut(s) 26, 281
AvaI CYCGRG 1 cut(s) 180
AvaII GGWCC 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 346
BalI TGGCCA 1 cut(s) 63
BanI GGYRCC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 2 cut(s) 346, 378
BbvI GCAGC 3 cut(s) 307, 322, 492
BccI CCATC 4 cut(s) 231, 361, 421, 476
BciT130I CCWGG 2 cut(s) 60, 89
BcnI CCSGG 2 cut(s) 26, 281
BcoDI GTCTC 3 cut(s) 34, 129, 177
BfoI RGCGCY 1 cut(s) 368
BglI GCCNNNNNGGC 1 cut(s) 238
BisI GCNGC 4 cut(s) 230, 321, 336, 481
BlsI GCNGC 4 cut(s) 231, 322, 337, 482
BmcAI AGTACT 1 cut(s) 52
Bme1390I CCNGG 4 cut(s) 26, 60, 89, 281
Bme18I GGWCC 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 178, 263
BmrFI CCNGG 4 cut(s) 26, 60, 89, 281
BmsI GCATC 2 cut(s) 18, 31
BpiI GAAGAC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 496
BpuMI CCSGG 2 cut(s) 26, 281
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 4 cut(s) 58, 87, 210, 274
BsaWI WCCGGW 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 280, 338
Bse118I RCCGGY 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 4
BseBI CCWGG 2 cut(s) 60, 89
BseDI CCNNGG 4 cut(s) 58, 87, 210, 274
BseLI CCNNNNNNNGG 3 cut(s) 88, 280, 338
BseMI GCAATG 1 cut(s) 4
BseMII CTCAG 2 cut(s) 150, 341
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 3 cut(s) 307, 322, 492
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 2 cut(s) 63, 279
BshNI GGYRCC 1 cut(s) 261
BsiHKAI GWGCWC 2 cut(s) 346, 378
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 4 cut(s) 26, 68, 280, 339
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 3 cut(s) 88, 280, 338
BsmAI GTCTC 3 cut(s) 34, 129, 177
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 2 cut(s) 63, 279
Bso31I GGTCTC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 180
Bsp1286I GDGCHC 2 cut(s) 346, 378
BspACI CCGC 2 cut(s) 82, 230
BspANI GGCC 2 cut(s) 63, 279
BspCNI CTCAG 2 cut(s) 149, 340
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 178, 263
BspT107I GGYRCC 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 338
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 4 cut(s) 58, 87, 210, 274
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 60, 89
Bst4CI ACNGT 4 cut(s) 55, 249, 255, 289
BstC8I GCNNGC 2 cut(s) 333, 363
BstDEI CTNAG 2 cut(s) 136, 327
BstFNI CGCG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 368
BstHHI GCGC 2 cut(s) 86, 367
BstMAI GTCTC 3 cut(s) 34, 129, 177
BstMWI GCNNNNNNNGC 5 cut(s) 238, 341, 373, 458, 480
BstNI CCWGG 2 cut(s) 60, 89
BstSCI CCNGG 4 cut(s) 24, 58, 87, 279
BstSLI GKGCMC 1 cut(s) 346
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 3 cut(s) 307, 322, 492
BstV2I GAAGAC 1 cut(s) 99
BsuRI GGCC 2 cut(s) 63, 279
BtsIMutI CAGTG 1 cut(s) 260
Cac8I GCNNGC 2 cut(s) 333, 363
CfoI GCGC 2 cut(s) 86, 367
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 51
CviAII CATG 2 cut(s) 13, 242
CviJI RGCY 9 cut(s) 63, 229, 279, 331, 361, 376, 461, 483, 500
CviKI_1 RGCY 9 cut(s) 63, 229, 279, 331, 361, 376, 461, 483, 500
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 2 cut(s) 136, 327
EaeI YGGCCR 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 378
Eco31I GGTCTC 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 376
Eco88I CYCGRG 1 cut(s) 180
EcoICRI GAGCTC 1 cut(s) 376
EcoRI GAATTC 1 cut(s) 143
EcoRII CCWGG 2 cut(s) 58, 87
EcoT14I CCWWGG 1 cut(s) 210
EcoT22I ATGCAT 2 cut(s) 6, 18
EcoT38I GRGCYC 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 2 cut(s) 16, 245
FaiI YATR 3 cut(s) 14, 243, 419
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 1 cut(s) 41
FatI CATG 2 cut(s) 12, 241
FauI CCCGC 1 cut(s) 89
Fnu4HI GCNGC 4 cut(s) 230, 321, 336, 481
FriOI GRGCYC 1 cut(s) 378
Fsp4HI GCNGC 4 cut(s) 230, 321, 336, 481
GlaI GCGC 2 cut(s) 85, 366
GluI GCNGC 4 cut(s) 230, 321, 336, 481
HaeII RGCGCY 1 cut(s) 368
HaeIII GGCC 2 cut(s) 63, 279
HapII CCGG 4 cut(s) 26, 68, 280, 339
HhaI GCGC 2 cut(s) 86, 367
Hin1II CATG 2 cut(s) 16, 245
Hin6I GCGC 2 cut(s) 84, 365
HinP1I GCGC 2 cut(s) 84, 365
HinfI GANTC 1 cut(s) 95
HpaII CCGG 4 cut(s) 26, 68, 280, 339
Hpy166II GTNNAC 3 cut(s) 155, 344, 423
Hpy188I TCNGA 3 cut(s) 104, 166, 275
Hpy188III TCNNGA 4 cut(s) 38, 128, 156, 424
Hpy8I GTNNAC 3 cut(s) 155, 344, 423
HpyCH4III ACNGT 4 cut(s) 55, 249, 255, 289
HpyCH4V TGCA 7 cut(s) 4, 9, 16, 44, 344, 394, 452
HpyF10VI GCNNNNNNNGC 5 cut(s) 238, 341, 373, 458, 480
HpyF3I CTNAG 2 cut(s) 136, 327
Hsp92II CATG 2 cut(s) 16, 245
HspAI GCGC 2 cut(s) 84, 365
Lsp1109I GCAGC 3 cut(s) 307, 322, 492
LweI GCATC 2 cut(s) 18, 31
MaeIII GTNAC 2 cut(s) 249, 283
MboII GAAGA 1 cut(s) 104
MhlI GDGCHC 2 cut(s) 346, 378
MlsI TGGCCA 1 cut(s) 63
MluCI AATT 2 cut(s) 143, 494
MluNI TGGCCA 1 cut(s) 63
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 2 cut(s) 184, 269
Mox20I TGGCCA 1 cut(s) 63
Mph1103I ATGCAT 2 cut(s) 6, 18
MscI TGGCCA 1 cut(s) 63
MseI TTAA 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 63
MspI CCGG 4 cut(s) 26, 68, 280, 339
MspR9I CCNGG 4 cut(s) 26, 60, 89, 281
Mva1269I GAATGC 1 cut(s) 16
MvaI CCWGG 2 cut(s) 60, 89
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 5 cut(s) 238, 341, 373, 458, 480
NciI CCSGG 2 cut(s) 26, 281
NlaIII CATG 2 cut(s) 16, 245
NlaIV GGNNCC 2 cut(s) 178, 263
NsiI ATGCAT 2 cut(s) 6, 18
PctI GAATGC 1 cut(s) 16
PkrI GCNGC 4 cut(s) 231, 322, 337, 482
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 378
Psp6I CCWGG 2 cut(s) 58, 87
PspGI CCWGG 2 cut(s) 58, 87
PspN4I GGNNCC 2 cut(s) 178, 263
PspPI GGNCC 1 cut(s) 176
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SacI GAGCTC 1 cut(s) 378
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 4 cut(s) 230, 321, 336, 481
Sau96I GGNCC 1 cut(s) 176
ScaI AGTACT 1 cut(s) 52
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 4 cut(s) 26, 60, 89, 281
SduI GDGCHC 2 cut(s) 346, 378
SetI ASST 3 cut(s) 378, 408, 485
SfaNI GCATC 2 cut(s) 18, 31
SinI GGWCC 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 2 cut(s) 143, 494
SsiI CCGC 2 cut(s) 82, 230
SstI GAGCTC 1 cut(s) 378
StyD4I CCNGG 4 cut(s) 24, 58, 87, 279
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 4 cut(s) 55, 249, 255, 289
TaqI TCGA 1 cut(s) 378
TasI AATT 2 cut(s) 143, 494
TatI WGTACW 1 cut(s) 50
TauI GCSGC 1 cut(s) 232
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 260
TseI GCWGC 3 cut(s) 320, 335, 480
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 1 cut(s) 260
VneI GTGCAC 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 1 cut(s) 143
ZrmI AGTACT 1 cut(s) 52
Zsp2I ATGCAT 2 cut(s) 6, 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.