Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003823

Physical Location & Seq

Genomic Coordinates Reverse (-)

37992253 .. 37993658

Gene Structure 1406 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAGGGTATCGCACGTTTTGCAACTTCTGCAACTCTCTGCGTGCTTCTTCCTTCAGTTCAGCCGAACAGAGCTTTACAGGATCACAGCAATGAGCAAACGGAAACAGCCAGACTCTAGTTCCCCGGCGGACTCTTTGAGCCAGAACGAGCGAATTCTATACAATGTGATCCATAGCAAGCAAGATATGGGGATTTGGACACGAGACATGAAGAAAGAGACAAACCTCCCTGACAAGGTGTTTAACGCAGCCTTAAAAACACTTCAAGCAAAGAAACTGATACAAGAGGTTGTAAATGTCCAAAGCAAGGGGAGAAAGCATTACATTGCTACAGAATTTGAGCCCTCCAAGGAGTTAACCGGTGGGGCTTGGTACTCGGAGGGGAAACTCGACAAAGATTATATAAACCTTGTAAAAGATCAGTTTGCGAAGATGATATATCAGCAGAAGGTTGCTACGTTGGAGGGAATTGCGGATGCAATCAGAAAAACTAAAATATTCAAGACCGAGTTTACAAAACAGCAAACGGAGGAGATTGTGAGGGATTTGGTTTTGGACAATCGAGTCATGGAGGTGAAGAGCACCGGGATGGGGGAGTTTGCTTCTATTCAAATTGGAAAAGTTTGCTATAAATGCAAAGGCAAGGGAGGTACTAGAGGAGAAACCAAAGTTGGCGCAATGGCTTCTATTCCATGTGGAGTTTGTCCGCGGATAAGTCAATGTACACCGGATGGGATTATTTCCCCATCAACCTGTGTCTACTTCGCAAAATGGTTGGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0008150 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc34

Protein Analysis

262

Amino Acids

29.5

Weight (kDa)

9.32

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpc34	PF05158	42 - 150	5.9e-29	RNA polymerase Rpc34 subunit
RNA_pol_Rpc34	PF05158	149 - 260	4.7e-13	RNA polymerase Rpc34 subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23710
fragaria_vesca	FvH4_6g29950 FvH4_6g29950 FvH4_6g41460
malus_domestica	MD08G1239800.v1.1 MD15G1431400.v1.1
prunus_persica	Prupe.1G576300_v2.0.a1 Prupe.5G067300_v2.0.a1
pyrus_communis	pycom08g20810 pycom15g38120
rosa_chinensis	RchiOBHm_Chr2g0135951 RchiOBHm_Chr6g0271261 RchiOBHm_Chr6g0271271
rosa_laevigata	RLG00000019491 RLG00000020962
rosa_multiflora	Rmu_sc0004866.1_g000010 Rmu_ssc0000343.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108750 Rroxscaffold_7G00200610
rosa_rugosa	Rorug02G0327000 Rorug02G0457600 Rorug06G0035800 Rorug06G0036000
rosa_samantha	Rh2BG385300 Rh2CG364400 Rh2DG401600 Rh6AG179300 Rh6BG182300 Rh6CG179200 Rh6DG170900
rosa_wichuraiana	Rw2G030860 Rw2G031070 Rw2G043270 Rw6G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	563
AccI	GTMKAC	1 cut(s)	759
AccII	CGCG	1 cut(s)	709
AciI	CCGC	4 cut(s)	128, 473, 707, 709
AclWI	GGATC	2 cut(s)	89, 163
AcsI	RAATTY	2 cut(s)	153, 335
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	3 cut(s)	374, 652, 724
AfiI	CCNNNNNNNGG	3 cut(s)	235, 307, 591
AgeI	ACCGGT	1 cut(s)	359
AgsI	TTSAA	3 cut(s)	266, 502, 611
AjuI	GAANNNNNNNTTGG	2 cut(s)	654, 686
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw21I	GWGCWC	1 cut(s)	584
Alw26I	GTCTC	2 cut(s)	198, 212
AlwI	GGATC	2 cut(s)	89, 163
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	153, 335
AsiGI	ACCGGT	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	677
AsuC2I	CCSGG	2 cut(s)	125, 586
AsuHPI	GGTGA	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	345
BauI	CACGAG	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	584
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	3 cut(s)	583, 725, 754
BcnI	CCSGG	2 cut(s)	125, 586
BcoDI	GTCTC	2 cut(s)	198, 212
BfaI	CTAG	2 cut(s)	117, 654
BfmI	CTRYAG	1 cut(s)	330
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	2 cut(s)	125, 586
BmrFI	CCNGG	2 cut(s)	125, 586
BmsI	GCATC	1 cut(s)	466
BpuMI	CCSGG	2 cut(s)	125, 586
BsaJI	CCNNGG	3 cut(s)	123, 348, 707
BsaWI	WCCGGW	2 cut(s)	359, 727
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 307, 591
Bse118I	RCCGGY	1 cut(s)	359
Bse3DI	GCAATG	3 cut(s)	96, 324, 684
BseDI	CCNNGG	3 cut(s)	123, 348, 707
BseGI	GGATG	3 cut(s)	481, 594, 736
BseLI	CCNNNNNNNGG	3 cut(s)	235, 307, 591
BseMI	GCAATG	3 cut(s)	96, 324, 684
BseRI	GAGGAG	2 cut(s)	545, 672
BseXI	GCAGC	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	709
BshTI	ACCGGT	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	584
BsiSI	CCGG	4 cut(s)	125, 360, 585, 728
BslI	CCNNNNNNNGG	3 cut(s)	235, 307, 591
BsmAI	GTCTC	2 cut(s)	198, 212
Bsp1286I	GDGCHC	2 cut(s)	345, 584
Bsp1407I	TGTACA	1 cut(s)	722
Bsp143I	GATC	3 cut(s)	81, 168, 418
BspACI	CCGC	4 cut(s)	128, 473, 707, 709
BspFNI	CGCG	1 cut(s)	709
BspPI	GGATC	2 cut(s)	89, 163
BspQI	GCTCTTC	1 cut(s)	572
BsrDI	GCAATG	3 cut(s)	96, 324, 684
BsrFI	RCCGGY	1 cut(s)	359
BsrGI	TGTACA	1 cut(s)	722
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	3 cut(s)	123, 348, 707
BssMI	GATC	3 cut(s)	81, 168, 418
BssSI	CACGAG	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	572
BstAPI	GCANNNNNTGC	2 cut(s)	19, 28
BstAUI	TGTACA	1 cut(s)	722
BstC8I	GCNNGC	2 cut(s)	43, 179
BstDSI	CCRYGG	1 cut(s)	707
BstF5I	GGATG	3 cut(s)	481, 594, 736
BstFNI	CGCG	1 cut(s)	709
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	3 cut(s)	84, 171, 421
BstMAI	GTCTC	2 cut(s)	198, 212
BstMBI	GATC	3 cut(s)	81, 168, 418
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 28, 633
BstSCI	CCNGG	2 cut(s)	123, 584
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	709
BstV1I	GCAGC	1 cut(s)	260
BtgI	CCRYGG	1 cut(s)	707
BtsCI	GGATG	3 cut(s)	481, 594, 736
Cac8I	GCNNGC	2 cut(s)	43, 179
CfoI	GCGC	1 cut(s)	677
Cfr10I	RCCGGY	1 cut(s)	359
Cfr42I	CCGCGG	1 cut(s)	710
Csp6I	GTAC	3 cut(s)	373, 651, 723
CspAI	ACCGGT	1 cut(s)	359
CviAII	CATG	3 cut(s)	208, 568, 693
CviJI	RGCY	8 cut(s)	63, 73, 109, 141, 251, 343, 368, 683
CviKI_1	RGCY	8 cut(s)	63, 73, 109, 141, 251, 343, 368, 683
CviQI	GTAC	3 cut(s)	373, 651, 723
DpnI	GATC	3 cut(s)	83, 170, 420
DpnII	GATC	3 cut(s)	81, 168, 418
DrdI	GACNNNNNNGTC	1 cut(s)	563
DseDI	GACNNNNNNGTC	1 cut(s)	563
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
EciI	GGCGGA	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	3 cut(s)	211, 571, 696
FatI	CATG	3 cut(s)	207, 567, 692
FblI	GTMKAC	1 cut(s)	759
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	3 cut(s)	488, 601, 743
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	117, 654
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	1 cut(s)	249
HapII	CCGG	4 cut(s)	125, 360, 585, 728
HhaI	GCGC	1 cut(s)	677
Hin1II	CATG	3 cut(s)	211, 571, 696
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HinfI	GANTC	3 cut(s)	113, 131, 564
HpaI	GTTAAC	1 cut(s)	357
HpaII	CCGG	4 cut(s)	125, 360, 585, 728
HphI	GGTGA	1 cut(s)	586
Hpy166II	GTNNAC	4 cut(s)	357, 513, 725, 760
Hpy188I	TCNGA	3 cut(s)	379, 485, 785
Hpy188III	TCNNGA	1 cut(s)	502
Hpy8I	GTNNAC	4 cut(s)	357, 513, 725, 760
HpyAV	CCTTC	2 cut(s)	62, 442
HpyCH4IV	ACGT	2 cut(s)	15, 458
HpyCH4V	TGCA	4 cut(s)	22, 31, 479, 636
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 28, 633
HpySE526I	ACGT	2 cut(s)	15, 458
Hsp92II	CATG	3 cut(s)	211, 571, 696
HspAI	GCGC	1 cut(s)	675
KspAI	GTTAAC	1 cut(s)	357
KspI	CCGCGG	1 cut(s)	710
Kzo9I	GATC	3 cut(s)	81, 168, 418
LguI	GCTCTTC	1 cut(s)	572
LpnPI	CCDG	9 cut(s)	64, 123, 138, 155, 243, 373, 598, 741, 766
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	2 cut(s)	117, 654
MaeII	ACGT	2 cut(s)	15, 458
MalI	GATC	3 cut(s)	83, 170, 420
MboI	GATC	3 cut(s)	81, 168, 418
MboII	GAAGA	4 cut(s)	40, 223, 442, 589
MhlI	GDGCHC	2 cut(s)	345, 584
MluCI	AATT	4 cut(s)	153, 335, 468, 612
MlyI	GAGTC	3 cut(s)	107, 125, 573
MmeI	TCCRAC	2 cut(s)	441, 756
MseI	TTAA	3 cut(s)	243, 254, 356
MslI	CAYNNNNRTG	3 cut(s)	89, 572, 587
MspA1I	CMGCKG	1 cut(s)	709
MspI	CCGG	4 cut(s)	125, 360, 585, 728
MspR9I	CCNGG	2 cut(s)	125, 586
MvnI	CGCG	1 cut(s)	709
MwoI	GCNNNNNNNGC	3 cut(s)	19, 28, 633
NciI	CCSGG	2 cut(s)	125, 586
NdeII	GATC	3 cut(s)	81, 168, 418
NlaIII	CATG	3 cut(s)	211, 571, 696
PciSI	GCTCTTC	1 cut(s)	572
PinAI	ACCGGT	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	3 cut(s)	107, 125, 572
PpsI	GAGTC	3 cut(s)	107, 125, 572
RsaI	GTAC	3 cut(s)	374, 652, 724
RsaNI	GTAC	3 cut(s)	373, 651, 723
RseI	CAYNNNNRTG	3 cut(s)	89, 572, 587
SacII	CCGCGG	1 cut(s)	710
SapI	GCTCTTC	1 cut(s)	572
SaqAI	TTAA	3 cut(s)	243, 254, 356
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	3 cut(s)	81, 168, 418
SchI	GAGTC	3 cut(s)	107, 125, 573
ScrFI	CCNGG	2 cut(s)	125, 586
SduI	GDGCHC	2 cut(s)	345, 584
SfaNI	GCATC	1 cut(s)	466
SfcI	CTRYAG	1 cut(s)	330
Sfr303I	CCGCGG	1 cut(s)	710
SgrBI	CCGCGG	1 cut(s)	710
SmiMI	CAYNNNNRTG	3 cut(s)	89, 572, 587
Sse9I	AATT	4 cut(s)	153, 335, 468, 612
SsiI	CCGC	4 cut(s)	128, 473, 707, 709
SspI	AATATT	1 cut(s)	498
SspMI	CTAG	2 cut(s)	117, 654
StyD4I	CCNGG	2 cut(s)	123, 584
StyI	CCWWGG	1 cut(s)	348
TaiI	ACGT	2 cut(s)	18, 461
TaqI	TCGA	2 cut(s)	390, 562
TaqII	GACCGA	1 cut(s)	521
TasI	AATT	4 cut(s)	153, 335, 468, 612
TatI	WGTACW	1 cut(s)	722
Tru1I	TTAA	3 cut(s)	243, 254, 356
Tru9I	TTAA	3 cut(s)	243, 254, 356
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	2 cut(s)	115, 542
XapI	RAATTY	2 cut(s)	153, 335
XmiI	GTMKAC	1 cut(s)	759
XspI	CTAG	2 cut(s)	117, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.