pycom15g38350

Divergent CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0016844
Physical Location & Seq
Forward (+)
38151030 .. 38153497
2468 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 669 bp
ATGATAACAAGGGACTACTTCATGAAGACAGAAAACAATAACTCATCAGATGTCCAAGAATTCTTCAAAGATCAGAAGAAGAAAAATCGTGCAATAATTTCCAATGCTGCCGGTTTTGATGGTGAAAAAGGTGCAAGTACCCCAAATGACGGCCAGCAAGAAAACAGCAGCTTAAAGCCATCGAATGATATGTCTTGGTTGTTCAGAAAATATCTTTTTACAAGAAGTAATAGCACTGGTAAATCCAGCACGGAAGCTGAATCTGAATCAGAAATTGTCAAAAGGCATTCATCACCCCGCCCTTCAGTACCACCTATGCTTCTTGGTAGTAATGATTTTCGAGGAGACCGGCTGTCTTTGCTAGAGCGAAAGCTTCTTCCGGGGTTGCGATGTGGTGATCAATCCAACAAGACTTCTACAACAGAACAACTTACAATATTTTACAATGGGATTGTCCATGTCTATGATAATATTCCTGCTGAGAAGGCAAAAGAGATTCTGTGTCGTGCTAGTGAAAACTCATCGTCCAAACCTTTTGTTAGAGAAAGGCTAAAAAAGGCACCACCACCTCTTAGACCGCAATTATCAGTTTCTAAACTAAGAGCAGGGGTTCCAATGGCAAGGAGACATTCCCTGCAATGTTTTCTCGAAAAGCGTCGTGGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
CCT_2 tify

Protein Analysis

223

Amino Acids

25.1

Weight (kDa)

9.9

Isoelectric Point (pI)

59.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 140 - 170 2.3e-14 tify domain
Jas_motif PF09425 205 - 222 3e-08 Jas motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016844)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11290
malus_domestica MD15G1434400.v1.1
prunus_persica Prupe.1G578500_v2.0.a1 Prupe.1G578500_v2.0.a1
pyrus_communis pycom15g38350
rosa_laevigata RLG00000004834
rosa_roxburghii Rroxscaffold_3G00268040
rosa_rugosa Rorug06G0475200
rosa_samantha Rh7AG065900 Rh7BG081800 Rh7CG081900 Rh7DG082900
rosa_wichuraiana Rw7G006890 Rw7G007110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 654
AccB1I GGYRCC 1 cut(s) 559
AciI CCGC 2 cut(s) 298, 578
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 2 cut(s) 139, 309
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 67
AhdI GACNNNNNGTC 1 cut(s) 352
AluBI AGCT 3 cut(s) 171, 257, 373
AluI AGCT 3 cut(s) 171, 257, 373
Alw26I GTCTC 2 cut(s) 339, 619
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 2 cut(s) 107, 168
ApoI RAATTY 1 cut(s) 59
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 3 cut(s) 134, 285, 407
BanI GGYRCC 1 cut(s) 559
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 94, 180
BccI CCATC 2 cut(s) 113, 187
BceAI ACGGC 1 cut(s) 166
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 381
BcoDI GTCTC 2 cut(s) 339, 619
BfaI CTAG 2 cut(s) 362, 510
BfuAI ACCTGC 1 cut(s) 654
BisI GCNGC 2 cut(s) 108, 169
BlsI GCNGC 2 cut(s) 109, 170
Bme1390I CCNGG 1 cut(s) 381
BmeRI GACNNNNNGTC 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 561, 612
BmrFI CCNGG 1 cut(s) 381
BpiI GAAGAC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 380
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse118I RCCGGY 2 cut(s) 110, 348
Bse1I ACTGG 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 644
BseDI CCNNGG 1 cut(s) 380
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 644
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 357
BseXI GCAGC 2 cut(s) 94, 180
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 559
BsiSI CCGG 3 cut(s) 111, 349, 380
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 2 cut(s) 339, 619
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 339
Bsp143I GATC 2 cut(s) 70, 397
BspACI CCGC 2 cut(s) 298, 578
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 472
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 561, 612
BspMI ACCTGC 1 cut(s) 654
BspT107I GGYRCC 1 cut(s) 559
BspTNI GGTCTC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 644
BsrFI RCCGGY 2 cut(s) 110, 348
BsrI ACTGG 1 cut(s) 241
BssAI RCCGGY 2 cut(s) 110, 348
BssECI CCNNGG 1 cut(s) 380
BssMI GATC 2 cut(s) 70, 397
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 3 cut(s) 480, 572, 599
BstKTI GATC 2 cut(s) 73, 400
BstMAI GTCTC 2 cut(s) 339, 619
BstMBI GATC 2 cut(s) 70, 397
BstMWI GCNNNNNNNGC 2 cut(s) 358, 485
BstSCI CCNGG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 94, 180
BstV2I GAAGAC 1 cut(s) 32
BsuRI GGCC 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 654
Cac8I GCNNGC 1 cut(s) 155
CciI TCATGA 1 cut(s) 21
Cfr10I RCCGGY 2 cut(s) 110, 348
CseI GACGC 1 cut(s) 644
Csp6I GTAC 2 cut(s) 138, 308
CviAII CATG 2 cut(s) 22, 458
CviJI RGCY 7 cut(s) 153, 171, 178, 257, 352, 373, 550
CviKI_1 RGCY 7 cut(s) 153, 171, 178, 257, 352, 373, 550
CviQI GTAC 2 cut(s) 138, 308
DdeI CTNAG 3 cut(s) 480, 572, 599
DpnI GATC 2 cut(s) 72, 399
DpnII GATC 2 cut(s) 70, 397
DriI GACNNNNNGTC 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 151
Eam1105I GACNNNNNGTC 1 cut(s) 352
Eco31I GGTCTC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 59
FaeI CATG 2 cut(s) 25, 461
FaiI YATR 5 cut(s) 23, 191, 317, 459, 465
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 21, 457
FauI CCCGC 1 cut(s) 305
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 2 cut(s) 108, 169
Fsp4HI GCNGC 2 cut(s) 108, 169
FspBI CTAG 2 cut(s) 362, 510
GluI GCNGC 2 cut(s) 108, 169
HaeIII GGCC 1 cut(s) 153
HapII CCGG 3 cut(s) 111, 349, 380
HgaI GACGC 1 cut(s) 644
Hin1II CATG 2 cut(s) 25, 461
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 3 cut(s) 260, 266, 496
HpaII CCGG 3 cut(s) 111, 349, 380
HphI GGTGA 3 cut(s) 134, 285, 407
Hpy188I TCNGA 5 cut(s) 49, 75, 206, 265, 271
Hpy188III TCNNGA 2 cut(s) 22, 647
Hpy99I CGWCG 1 cut(s) 660
HpyAV CCTTC 2 cut(s) 312, 478
HpyCH4V TGCA 3 cut(s) 92, 134, 637
HpyF10VI GCNNNNNNNGC 2 cut(s) 358, 485
HpyF3I CTNAG 3 cut(s) 480, 572, 599
Hsp92II CATG 2 cut(s) 25, 461
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 2 cut(s) 70, 397
Lsp1109I GCAGC 2 cut(s) 94, 180
MaeI CTAG 2 cut(s) 362, 510
MalI GATC 2 cut(s) 72, 399
MboI GATC 2 cut(s) 70, 397
MboII GAAGA 5 cut(s) 37, 55, 88, 91, 368
MluCI AATT 4 cut(s) 59, 96, 273, 581
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 2 cut(s) 335, 579
MseI TTAA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 462
MspI CCGG 3 cut(s) 111, 349, 380
MspR9I CCNGG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 286
MwoI GCNNNNNNNGC 2 cut(s) 358, 485
NciI CCSGG 1 cut(s) 381
NdeII GATC 2 cut(s) 70, 397
NlaIII CATG 2 cut(s) 25, 461
NlaIV GGNNCC 2 cut(s) 561, 612
PagI TCATGA 1 cut(s) 21
PctI GAATGC 1 cut(s) 286
PfeI GAWTC 3 cut(s) 260, 266, 496
PkrI GCNGC 2 cut(s) 109, 170
PspN4I GGNNCC 2 cut(s) 561, 612
RsaI GTAC 2 cut(s) 139, 309
RsaNI GTAC 2 cut(s) 138, 308
RseI CAYNNNNRTG 1 cut(s) 462
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 2 cut(s) 108, 169
Sau3AI GATC 2 cut(s) 70, 397
ScrFI CCNGG 1 cut(s) 381
SetI ASST 8 cut(s) 133, 173, 259, 316, 375, 535, 571, 668
SmiMI CAYNNNNRTG 1 cut(s) 462
Sse9I AATT 4 cut(s) 59, 96, 273, 581
SsiI CCGC 2 cut(s) 298, 578
SspI AATATT 2 cut(s) 438, 472
SspMI CTAG 2 cut(s) 362, 510
StyD4I CCNGG 1 cut(s) 379
TaqI TCGA 3 cut(s) 182, 340, 648
TasI AATT 4 cut(s) 59, 96, 273, 581
TfiI GAWTC 3 cut(s) 260, 266, 496
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 241
TseI GCWGC 2 cut(s) 107, 168
TspDTI ATGAA 3 cut(s) 10, 38, 279
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 1 cut(s) 241
XapI RAATTY 1 cut(s) 59
XspI CTAG 2 cut(s) 362, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.