Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008678

Physical Location & Seq

Genomic Coordinates Forward (+)

38886977 .. 38888150

Gene Structure 1174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGATCACCCAAAGTAGATTTCTCCATCCAATTCCGTCCAATCCGTATATAAATCGGACAAGAAAGAGAGAGAGAGAGAGGGAGAGGCCAGACACGAAATACGATATTGGAACAAGAAGAAAAAAGAGAGAGACAGAGAGTGGGTGCGCTTTCATGTGCAATCACGGAAAGCGAATGGAGTGGTGGGGTAGTAGTAGCACCAGTAATAGCAGGAAGAAGAAGAAGACGACGACGGAGACGACGACGTTGAGAAAGTTGGAAGAGCTTCCGCCCTACATGAAAGACAACGAGTACATATTGGACTATTACAGATGCGAGTGGCCCTTGAAGGATCTCTTGTTCAGCGTCTTTGCCTTCCACAACGAAACCCTCAACATCTGGACCCACTTGGTGGGGTTCTTCATATTCCTGGGACTGACGCTCATCACCTTGACGGACAACGACTCACTCACTGTTGCTGCTTTCTGTTTGGTGGGTAAATATGGCAGGGCTGTTGCGGTTCCTGGTCCGTTGATCAATGTCTCCTCCTCCTCGCACAATGTAAATGCATTTCTTCCTCGTTCGTGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009755 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016021 GO:0016500 GO:0019221 GO:0019395 GO:0019752 GO:0019827 GO:0023051 GO:0023052 GO:0023056 GO:0030258 GO:0030718 GO:0031224 GO:0032024 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0032879 GO:0032880 GO:0033211 GO:0033500 GO:0034097 GO:0034285 GO:0034440 GO:0036099 GO:0038023 GO:0042221 GO:0042562 GO:0042592 GO:0042593 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044425 GO:0044464 GO:0046883 GO:0046887 GO:0048518 GO:0048522 GO:0048878 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051716 GO:0055088 GO:0055090 GO:0055114 GO:0060089 GO:0065007 GO:0065008 GO:0070201 GO:0070328 GO:0070887 GO:0071310 GO:0071345 GO:0071495 GO:0071704 GO:0071944 GO:0090087 GO:0090276 GO:0090277 GO:0098727 GO:1901700 GO:1903530 GO:1903532 GO:1904951

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

191

Amino Acids

22.18

Weight (kDa)

9.51

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	117 - 150	1.6e-06	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20270
fragaria_vesca	FvH4_1g02500 FvH4_1g02500 FvH4_1g02500
malus_domestica	MD02G1022400.v1.1 MD15G1165000.v1.1
prunus_persica	Prupe.7G249700_v2.0.a1
pyrus_communis	pycom02g01930 pycom15g14790 pycom15g39150
rosa_chinensis	RchiOBHm_Chr2g0087501
rosa_laevigata	RLG00000015874
rosa_multiflora	Rmu_co8128214.1_g000001 Rmu_sc0002299.1_g000010
rosa_roxburghii	Rroxscaffold_2G00153500
rosa_rugosa	Rorug01G0476100 Rorug01G0476200 Rorug01G0476300
rosa_samantha	Rh2AG029500 Rh2BG029600 Rh2CG029600 Rh2DG029500
rosa_wichuraiana	Rw2G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	391
AciI	CCGC	2 cut(s)	269, 497
AclWI	GGATC	1 cut(s)	339
AdeI	CACNNNGTG	1 cut(s)	391
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	1 cut(s)	328
AjnI	CCWGG	2 cut(s)	408, 502
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AloI	GAACNNNNNNTCC	2 cut(s)	323, 355
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
Alw26I	GTCTC	3 cut(s)	125, 230, 526
AlwI	GGATC	1 cut(s)	339
AoxI	GGCC	2 cut(s)	86, 320
ApeKI	GCWGC	1 cut(s)	458
Asp700I	GAANNNNTTC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	3 cut(s)	321, 381, 506
AsuHPI	GGTGA	1 cut(s)	418
AvaII	GGWCC	2 cut(s)	381, 506
BbsI	GAAGAC	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	410, 504
BclI	TGATCA	2 cut(s)	3, 513
BcoDI	GTCTC	3 cut(s)	125, 230, 526
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
Bme1390I	CCNGG	2 cut(s)	410, 504
Bme18I	GGWCC	2 cut(s)	381, 506
BmgT120I	GGNCC	3 cut(s)	321, 381, 506
BmiI	GGNNCC	2 cut(s)	383, 501
BmrFI	CCNGG	2 cut(s)	410, 504
BmsI	GCATC	1 cut(s)	302
BpiI	GAAGAC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	410, 504
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	3 cut(s)	514, 517, 520
BseXI	GCAGC	1 cut(s)	445
BshFI	GGCC	2 cut(s)	88, 322
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	3 cut(s)	125, 230, 526
BsmBI	CGTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	2 cut(s)	88, 322
Bsp143I	GATC	3 cut(s)	3, 331, 513
BspACI	CCGC	2 cut(s)	269, 497
BspANI	GGCC	2 cut(s)	88, 322
BspLI	GGNNCC	2 cut(s)	383, 501
BspPI	GGATC	1 cut(s)	339
BspQI	GCTCTTC	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	3 cut(s)	3, 331, 513
Bst2UI	CCWGG	2 cut(s)	410, 504
Bst4CI	ACNGT	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	3 cut(s)	6, 334, 516
BstMAI	GTCTC	3 cut(s)	125, 230, 526
BstMBI	GATC	3 cut(s)	3, 331, 513
BstNI	CCWGG	2 cut(s)	410, 504
BstSCI	CCNGG	2 cut(s)	408, 502
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	88, 322
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	450
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	3 cut(s)	321, 381, 506
CseI	GACGC	2 cut(s)	334, 427
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	2 cut(s)	154, 277
CviJI	RGCY	4 cut(s)	88, 265, 322, 491
CviKI_1	RGCY	4 cut(s)	88, 265, 322, 491
CviQI	GTAC	1 cut(s)	292
DpnI	GATC	3 cut(s)	5, 333, 515
DpnII	GATC	3 cut(s)	3, 331, 513
DraIII	CACNNNGTG	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	381, 506
EcoRII	CCWGG	2 cut(s)	408, 502
EcoT22I	ATGCAT	1 cut(s)	550
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	2 cut(s)	157, 280
FaiI	YATR	7 cut(s)	48, 50, 155, 278, 296, 404, 483
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	2 cut(s)	153, 276
FbaI	TGATCA	2 cut(s)	3, 513
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	459
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	88, 322
HgaI	GACGC	2 cut(s)	334, 427
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	157, 280
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	1 cut(s)	443
HphI	GGTGA	1 cut(s)	418
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	1 cut(s)	379
Hpy99I	CGWCG	4 cut(s)	232, 235, 244, 247
HpyAV	CCTTC	2 cut(s)	322, 364
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	2 cut(s)	159, 548
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	157, 280
HspAI	GCGC	1 cut(s)	147
Ksp22I	TGATCA	2 cut(s)	3, 513
Kzo9I	GATC	3 cut(s)	3, 331, 513
LguI	GCTCTTC	1 cut(s)	255
LpnPI	CCDG	9 cut(s)	102, 196, 214, 364, 395, 422, 472, 489, 516
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	1 cut(s)	302
MaeII	ACGT	1 cut(s)	245
MalI	GATC	3 cut(s)	5, 333, 515
MboI	GATC	3 cut(s)	3, 331, 513
MboII	GAAGA	8 cut(s)	129, 226, 229, 232, 235, 272, 391, 545
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	7 cut(s)	72, 78, 380, 535, 538, 541, 567
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	264
MspR9I	CCNGG	2 cut(s)	410, 504
MvaI	CCWGG	2 cut(s)	410, 504
NdeII	GATC	3 cut(s)	3, 331, 513
NlaIII	CATG	2 cut(s)	157, 280
NlaIV	GGNNCC	2 cut(s)	383, 501
NsiI	ATGCAT	1 cut(s)	550
PciSI	GCTCTTC	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	2 cut(s)	236, 239
PdmI	GAANNNNTTC	1 cut(s)	264
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	408, 502
PspGI	CCWGG	2 cut(s)	408, 502
PspN4I	GGNNCC	2 cut(s)	383, 501
PspPI	GGNCC	3 cut(s)	321, 381, 506
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	255
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	3 cut(s)	3, 331, 513
Sau96I	GGNCC	3 cut(s)	321, 381, 506
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	2 cut(s)	410, 504
SetI	ASST	3 cut(s)	248, 267, 431
SfaNI	GCATC	1 cut(s)	302
SinI	GGWCC	2 cut(s)	381, 506
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	2 cut(s)	269, 497
StyD4I	CCNGG	2 cut(s)	408, 502
TaaI	ACNGT	1 cut(s)	454
TaiI	ACGT	1 cut(s)	248
TasI	AATT	1 cut(s)	30
TatI	WGTACW	1 cut(s)	291
TscAI	CASTG	1 cut(s)	457
TseI	GCWGC	1 cut(s)	458
TspDTI	ATGAA	3 cut(s)	142, 293, 391
TspGWI	ACGGA	6 cut(s)	24, 33, 180, 248, 449, 498
TspRI	CASTG	1 cut(s)	457
Van91I	CCANNNNNTGG	1 cut(s)	391
VpaK11BI	GGWCC	2 cut(s)	381, 506
XmnI	GAANNNNTTC	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.