Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005436

Physical Location & Seq

Genomic Coordinates Forward (+)

1495323 .. 1498358

Gene Structure 3036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGAATCGGCTTTTGCAGGGTGATGTTGGTTGTGGGAAAACCGTGGTAGCTTTTCTAGCATGCATGGAGGTTATTGGCTCTGGATATCAGGCAGCTTTCATGGTTCCAACTGAGTTGCTTGCAGTCCAGCATTATGAGCACTTAAATAATCTGTTTGAAAATATGGAGGATGTTGAACGAAAACCTTCAATTGCTTTACTAACCGGCTCAACCCCATCAAAACAATCACGGATAATTCTTGAGGGTCTCAGGACTGGAGAGATATCGATGGTCATTGGAACCACCAGTTTGATATCTGACAAAATAGAGTTCTCTGCATTACGCATTGCAGTGGTGGATGAACAATATCGTTTTGGTGTGATCCAAAGAGGACGGCTTAACAGTAAGCTATACTATACCTCTGTAAATTCTAGAATGGTAGCCGCCAATTCAGATGTGACCTCCAAAGGCGACAACCATATGGCTCCTCATGTTCTTGCCATGTCAGCTACTCCTATACCGAGGACACTTGCTCTGGCTTTATATGGTGATATGTCATTGACACAGATAACCGACTTACCTCCAGGAAGAATACCAGTTGAGACGTTCATCATTGAAGGAAATGACAATGGATTTGAGGATGTTTATGAGATGATGCTGGATGAGTTAAAAGGAGGAGGGAGAGTCTATCTTGTGTATCCAGTTATTGAACAATCTGAACAGCTGCCGCAACTTCGTGCAGCTGCAGCAGATTTTGAAGCTATATCTGATAGGTTTCAGGGCTACACTTGTGGATTGTTGCATGGAAGGATGAAGAGTGATGAGAAAGATGAAGCATTGAGAAAGTTCAGATCTGGGGAAACAAATATACTGCTTTCCACACAAGTTATTGAGATTGGTGTTGATGTTCCCGATGCATCTATGATGGTTGTTATGAACGCTGAGAGATTTGGGATAGCTCAGTTACACCAACTTAGAGGACGAGTTGGACGAGGAGTGAGAAAGTCTAAATGTATACTGTTAGCATCATCTTCCAGTAGTCTAACTCGGTTGAAGGTCCTGGGGAAATCATCAGATGGTTTTTACTTGGCAAACATGGACCTTCTTCTACGTGGACCTGGTAACTTGCTTGGCAAGAAACAATCAGGACATCTTCCAGAGTTTCCTATTGCAAGATTGGAAGTAGATGGCAATATCTTACAGGAAGCACATCTTGCTGGTCTGAAAGTTTTAGGCGCTTCCCATGATTTGGAGCGATTCCCGATCCTTAAGGCAGAGCTTAGCATGAGAGAGCCGCTCTCTATTCTGGGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

432

Amino Acids

47.25

Weight (kDa)

5.92

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	4 - 169	1.6e-16	DEAD/DEAH box helicase
Helicase_C	PF00271	215 - 324	1.1e-19	Helicase conserved C-terminal domain
RecG_dom3_C	PF19833	351 - 406	9.6e-08	ATP-dependent DNA helicase RecG, domain 3, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01440
fragaria_vesca	FvH4_4g32470 FvH4_4g32470
malus_domestica	MD13G1025100.v1.1 MD16G1027600.v1.1 MD16G1027700.v1.1
prunus_persica	Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1 Prupe.1G325100_v2.0.a1
pyrus_communis	pycom13g02340 pycom16g02340
rosa_chinensis	RchiOBHm_Chr4g0441331
rosa_laevigata	RLG00000006101
rosa_multiflora	Rmu_co8457807.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382220
rosa_rugosa	Rorug04G0332400
rosa_samantha	Rh4AG384400 Rh4BG398500 Rh4CG413600 Rh4DG391100
rosa_wichuraiana	Rw4G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1228
AccBSI	CCGCTC	1 cut(s)	1276
AccI	GTMKAC	1 cut(s)	994
AciI	CCGC	3 cut(s)	423, 707, 1274
AclWI	GGATC	2 cut(s)	355, 1237
AcsI	RAATTY	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	1228
AflII	CTTAAG	1 cut(s)	1247
AgsI	TTSAA	7 cut(s)	158, 176, 189, 596, 689, 737, 1033
AjnI	CCWGG	3 cut(s)	562, 1038, 1096
AluBI	AGCT	9 cut(s)	50, 95, 388, 488, 703, 722, 740, 938, 1258
AluI	AGCT	9 cut(s)	50, 95, 388, 488, 703, 722, 740, 938, 1258
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	2 cut(s)	251, 575
AlwI	GGATC	2 cut(s)	355, 1237
ApeKI	GCWGC	5 cut(s)	92, 703, 719, 722, 725
ApoI	RAATTY	1 cut(s)	406
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
Asp700I	GAANNNNTTC	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	1217
AspS9I	GGNCC	3 cut(s)	1036, 1078, 1094
AsuHPI	GGTGA	2 cut(s)	32, 539
AvaII	GGWCC	3 cut(s)	1036, 1078, 1094
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	5 cut(s)	104, 690, 709, 731, 737
BccI	CCATC	5 cut(s)	223, 262, 898, 1049, 1160
BceAI	ACGGC	1 cut(s)	389
BciT130I	CCWGG	3 cut(s)	564, 1040, 1098
BciVI	GTATCC	1 cut(s)	687
BcoDI	GTCTC	2 cut(s)	251, 575
BfaI	CTAG	3 cut(s)	56, 411, 1294
BfmI	CTRYAG	1 cut(s)	723
BfoI	RGCGCY	1 cut(s)	1218
BfrI	CTTAAG	1 cut(s)	1247
BfuI	GTATCC	1 cut(s)	687
BglII	AGATCT	1 cut(s)	830
BisI	GCNGC	8 cut(s)	93, 423, 704, 707, 720, 723, 726, 1274
BlpI	GCTNAGC	1 cut(s)	1259
BlsI	GCNGC	8 cut(s)	94, 424, 705, 708, 721, 724, 727, 1275
Bme1390I	CCNGG	3 cut(s)	564, 1040, 1098
Bme18I	GGWCC	3 cut(s)	1036, 1078, 1094
BmgT120I	GGNCC	3 cut(s)	1036, 1078, 1094
BmiI	GGNNCC	3 cut(s)	105, 280, 465
BmrFI	CCNGG	3 cut(s)	564, 1040, 1098
BmsI	GCATC	4 cut(s)	624, 883, 905, 1013
BplI	GAGNNNNNCTC	4 cut(s)	1260, 1292, 1262, 1294
BpmI	CTGGAG	2 cut(s)	276, 546
Bpu1102I	GCTNAGC	1 cut(s)	1259
BpuEI	CTTGAG	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	266
BsaAI	YACGTR	1 cut(s)	1091
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	42, 500, 1039
BsaXI	ACNNNNNCTCC	2 cut(s)	648, 678
Bsc4I	CCNNNNNNNGG	1 cut(s)	1228
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	5 cut(s)	259, 285, 575, 680, 1014
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	3 cut(s)	564, 1040, 1098
BseCI	ATCGAT	1 cut(s)	266
BseDI	CCNNGG	3 cut(s)	42, 500, 1039
BseGI	GGATG	5 cut(s)	175, 343, 625, 646, 795
BseLI	CCNNNNNNNGG	1 cut(s)	1228
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	4 cut(s)	102, 262, 912, 953
BseNI	ACTGG	5 cut(s)	259, 285, 575, 680, 1014
BseRI	GAGGAG	3 cut(s)	456, 669, 987
BseXI	GCAGC	5 cut(s)	104, 690, 709, 731, 737
BsgI	GTGCAG	1 cut(s)	738
BshVI	ATCGAT	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	1228
BsmAI	GTCTC	2 cut(s)	251, 575
BsmBI	CGTCTC	1 cut(s)	575
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	360, 830, 1242
Bsp1720I	GCTNAGC	1 cut(s)	1259
BspACI	CCGC	3 cut(s)	423, 707, 1274
BspCNI	CTCAG	4 cut(s)	103, 261, 913, 952
BspDI	ATCGAT	1 cut(s)	266
BspLI	GGNNCC	3 cut(s)	105, 280, 465
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	2 cut(s)	355, 1237
BspTI	CTTAAG	1 cut(s)	1247
BspTNI	GGTCTC	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	1276
BsrDI	GCAATG	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	5 cut(s)	259, 285, 575, 680, 1014
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	42, 500, 1039
BssMI	GATC	3 cut(s)	360, 830, 1242
BssNAI	GTATAC	1 cut(s)	995
Bst1107I	GTATAC	1 cut(s)	995
Bst2UI	CCWGG	3 cut(s)	564, 1040, 1098
Bst4CI	ACNGT	3 cut(s)	43, 383, 999
Bst6I	CTCTTC	1 cut(s)	788
BstAFI	CTTAAG	1 cut(s)	1247
BstAPI	GCANNNNNTGC	1 cut(s)	1193
BstBAI	YACGTR	1 cut(s)	1091
BstC8I	GCNNGC	2 cut(s)	61, 120
BstDEI	CTNAG	6 cut(s)	111, 248, 921, 939, 953, 1259
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	5 cut(s)	175, 343, 625, 646, 795
BstH2I	RGCGCY	1 cut(s)	1218
BstHHI	GCGC	1 cut(s)	1217
BstKTI	GATC	3 cut(s)	363, 833, 1245
BstMAI	GTCTC	2 cut(s)	251, 575
BstMBI	GATC	3 cut(s)	360, 830, 1242
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 136, 485, 725, 1193
BstNI	CCWGG	3 cut(s)	564, 1040, 1098
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	3 cut(s)	562, 1038, 1096
BstSFI	CTRYAG	1 cut(s)	723
BstV1I	GCAGC	5 cut(s)	104, 690, 709, 731, 737
BstX2I	RGATCY	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	830
BstZ17I	GTATAC	1 cut(s)	995
Bsu15I	ATCGAT	1 cut(s)	266
BsuI	GTATCC	1 cut(s)	687
BsuTUI	ATCGAT	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	5 cut(s)	175, 343, 625, 646, 795
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	2 cut(s)	61, 120
CfoI	GCGC	1 cut(s)	1217
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	3 cut(s)	1036, 1078, 1094
ClaI	ATCGAT	1 cut(s)	266
CsiI	ACCWGGT	1 cut(s)	1096
CviAII	CATG	9 cut(s)	60, 64, 100, 470, 481, 782, 1075, 1223, 1264
DdeI	CTNAG	6 cut(s)	111, 248, 921, 939, 953, 1259
DpnI	GATC	3 cut(s)	362, 832, 1244
DpnII	GATC	3 cut(s)	360, 830, 1242
Eam1104I	CTCTTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	788
Eco31I	GGTCTC	1 cut(s)	251
Eco32I	GATATC	3 cut(s)	86, 264, 294
Eco47I	GGWCC	3 cut(s)	1036, 1078, 1094
EcoO109I	RGGNCCY	1 cut(s)	1036
EcoRII	CCWGG	3 cut(s)	562, 1038, 1096
EcoRV	GATATC	3 cut(s)	86, 264, 294
EcoT22I	ATGCAT	2 cut(s)	65, 898
Esp3I	CGTCTC	1 cut(s)	575
FaeI	CATG	9 cut(s)	63, 67, 103, 473, 484, 785, 1078, 1226, 1267
FalI	AAGNNNNNCTT	2 cut(s)	1176, 1208
FatI	CATG	9 cut(s)	59, 63, 99, 469, 480, 781, 1074, 1222, 1263
FauNDI	CATATG	1 cut(s)	459
FblI	GTMKAC	1 cut(s)	994
Fnu4HI	GCNGC	8 cut(s)	93, 423, 704, 707, 720, 723, 726, 1274
FokI	GGATG	5 cut(s)	182, 350, 632, 653, 802
Fsp4HI	GCNGC	8 cut(s)	93, 423, 704, 707, 720, 723, 726, 1274
FspBI	CTAG	3 cut(s)	56, 411, 1294
GlaI	GCGC	1 cut(s)	1216
GluI	GCNGC	8 cut(s)	93, 423, 704, 707, 720, 723, 726, 1274
GsuI	CTGGAG	2 cut(s)	276, 546
HaeII	RGCGCY	1 cut(s)	1218
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	1 cut(s)	1217
Hin1II	CATG	9 cut(s)	63, 67, 103, 473, 484, 785, 1078, 1226, 1267
Hin6I	GCGC	1 cut(s)	1215
HinP1I	GCGC	1 cut(s)	1215
HinfI	GANTC	3 cut(s)	4, 663, 1236
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	2 cut(s)	32, 539
Hpy166II	GTNNAC	2 cut(s)	995, 1094
Hpy188I	TCNGA	7 cut(s)	298, 433, 697, 748, 830, 1054, 1203
Hpy188III	TCNNGA	8 cut(s)	81, 239, 250, 411, 890, 1125, 1136, 1240
Hpy8I	GTNNAC	2 cut(s)	995, 1094
HpyAV	CCTTC	5 cut(s)	195, 590, 780, 1027, 1091
HpyCH4III	ACNGT	3 cut(s)	43, 383, 999
HpyCH4IV	ACGT	2 cut(s)	584, 1090
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 136, 485, 725, 1193
HpyF3I	CTNAG	6 cut(s)	111, 248, 921, 939, 953, 1259
HpySE526I	ACGT	2 cut(s)	584, 1090
Hsp92II	CATG	9 cut(s)	63, 67, 103, 473, 484, 785, 1078, 1226, 1267
HspAI	GCGC	1 cut(s)	1215
Kzo9I	GATC	3 cut(s)	360, 830, 1242
LmnI	GCTCC	2 cut(s)	469, 1231
Lsp1109I	GCAGC	5 cut(s)	104, 690, 709, 731, 737
LweI	GCATC	4 cut(s)	624, 883, 905, 1013
MabI	ACCWGGT	1 cut(s)	1096
MaeI	CTAG	3 cut(s)	56, 411, 1294
MaeII	ACGT	2 cut(s)	584, 1090
MaeIII	GTNAC	4 cut(s)	436, 942, 1100, 1289
MalI	GATC	3 cut(s)	362, 832, 1244
MbiI	CCGCTC	1 cut(s)	1276
MboI	GATC	3 cut(s)	360, 830, 1242
MboII	GAAGA	5 cut(s)	579, 805, 1002, 1076, 1124
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	1 cut(s)	830
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	4 cut(s)	189, 234, 406, 427
MlyI	GAGTC	1 cut(s)	672
MmeI	TCCRAC	2 cut(s)	131, 946
Mph1103I	ATGCAT	2 cut(s)	65, 898
MroXI	GAANNNNTTC	1 cut(s)	184
MseI	TTAA	4 cut(s)	143, 378, 647, 1248
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	2 cut(s)	703, 722
MspCI	CTTAAG	1 cut(s)	1247
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	3 cut(s)	564, 1040, 1098
MunI	CAATTG	1 cut(s)	189
MvaI	CCWGG	3 cut(s)	564, 1040, 1098
MwoI	GCNNNNNNNGC	5 cut(s)	56, 136, 485, 725, 1193
NdeI	CATATG	1 cut(s)	459
NdeII	GATC	3 cut(s)	360, 830, 1242
NlaIII	CATG	9 cut(s)	63, 67, 103, 473, 484, 785, 1078, 1226, 1267
NlaIV	GGNNCC	3 cut(s)	105, 280, 465
NmuCI	GTSAC	2 cut(s)	436, 1289
NsiI	ATGCAT	2 cut(s)	65, 898
NspI	RCATGY	1 cut(s)	63
PaeI	GCATGC	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	967
PdmI	GAANNNNTTC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	4, 1236
PflMI	CCANNNNNTGG	1 cut(s)	1228
PfoI	TCCNGGA	1 cut(s)	562
PkrI	GCNGC	8 cut(s)	94, 424, 705, 708, 721, 724, 727, 1275
PleI	GAGTC	1 cut(s)	671
PpsI	GAGTC	1 cut(s)	671
Ppu21I	YACGTR	1 cut(s)	1091
PpuMI	RGGWCCY	1 cut(s)	1036
Psp5II	RGGWCCY	1 cut(s)	1036
Psp6I	CCWGG	3 cut(s)	562, 1038, 1096
PspGI	CCWGG	3 cut(s)	562, 1038, 1096
PspN4I	GGNNCC	3 cut(s)	105, 280, 465
PspPI	GGNCC	3 cut(s)	1036, 1078, 1094
PspPPI	RGGWCCY	1 cut(s)	1036
PstI	CTGCAG	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	830
PvuII	CAGCTG	2 cut(s)	703, 722
RseI	CAYNNNNRTG	1 cut(s)	329
SaqAI	TTAA	4 cut(s)	143, 378, 647, 1248
SatI	GCNGC	8 cut(s)	93, 423, 704, 707, 720, 723, 726, 1274
Sau3AI	GATC	3 cut(s)	360, 830, 1242
Sau96I	GGNCC	3 cut(s)	1036, 1078, 1094
SchI	GAGTC	1 cut(s)	672
ScrFI	CCNGG	3 cut(s)	564, 1040, 1098
SduI	GDGCHC	1 cut(s)	141
SexAI	ACCWGGT	1 cut(s)	1096
SfaNI	GCATC	4 cut(s)	624, 883, 905, 1013
SfcI	CTRYAG	1 cut(s)	723
SinI	GGWCC	3 cut(s)	1036, 1078, 1094
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	2 cut(s)	239, 1247
SmoI	CTYRAG	2 cut(s)	239, 1247
SphI	GCATGC	1 cut(s)	63
Sse9I	AATT	4 cut(s)	189, 234, 406, 427
SsiI	CCGC	3 cut(s)	423, 707, 1274
SspMI	CTAG	3 cut(s)	56, 411, 1294
StyD4I	CCNGG	3 cut(s)	562, 1038, 1096
TaaI	ACNGT	3 cut(s)	43, 383, 999
TaiI	ACGT	2 cut(s)	587, 1093
TaqI	TCGA	1 cut(s)	266
TasI	AATT	4 cut(s)	189, 234, 406, 427
TauI	GCSGC	3 cut(s)	425, 709, 1276
TfiI	GAWTC	2 cut(s)	4, 1236
Tru1I	TTAA	4 cut(s)	143, 378, 647, 1248
Tru9I	TTAA	4 cut(s)	143, 378, 647, 1248
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	2 cut(s)	436, 1289
TseI	GCWGC	5 cut(s)	92, 703, 719, 722, 725
Tsp45I	GTSAC	2 cut(s)	436, 1289
TspDTI	ATGAA	7 cut(s)	17, 88, 354, 577, 806, 825, 929
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	1 cut(s)	336
Van91I	CCANNNNNTGG	1 cut(s)	1228
Vha464I	CTTAAG	1 cut(s)	1247
VpaK11BI	GGWCC	3 cut(s)	1036, 1078, 1094
XapI	RAATTY	1 cut(s)	406
XbaI	TCTAGA	1 cut(s)	410
XceI	RCATGY	1 cut(s)	63
XmiI	GTMKAC	1 cut(s)	994
XmnI	GAANNNNTTC	1 cut(s)	184
XspI	CTAG	3 cut(s)	56, 411, 1294
Zsp2I	ATGCAT	2 cut(s)	65, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.