Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011996

Physical Location & Seq

Genomic Coordinates Reverse (-)

1561091 .. 1584201

Gene Structure 23111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTTATCTTTGCACTTGAGAAGTGAGGGAAAAGAAAAAGTAGAGGCTCTGAAAGCCTTCGGAGTTTCACAAAGAGATGTGATGTTGTCTGTGCCTGTTGGGACACTGGCAGCACTCACCCTTCTTCCAGTAGAACCTGCGGACGAACGCGTTGTCAATCCCGAGATCAGGAAGAAGATTTTTGAAAAGGCATTCCCTAGTTGCAGCAATGTGGTGGGCGGTTCGCGTCTTCTGGCGGCGGTCGGAGAAACCCAGTTGCCCACGAAGCGCTCGATGTCGGTGTCAACCACCACCACCACCACCACAAAGAAGAGAGCTTTTCCTCTTCAGTTGAGAAGTGAGGGAAAAGAAAAAGTGGAGGCTCCGAAAGCCTTCGGACTTTCACGAAGAGATGTGATGTTATCTGTGCCTGTTGGGACACTGGCAGCAGTCATCCTTCTTCCAGTAGAACCTGCGGAAGCACGTGTTGTCAATCCCGAGATCAGGAAGAAGATTTTTGAAAAGTTAGCGAAGATAAGGGAGCAGTTTGGTTTGTCAAAGCCAAAAACCAATGACGGGAAGGAGGCGTACCCATCACCGCCATCGCCGAAGGAGAAAAGGCCTCAGACATTGCTACCACCTGTTGAAGTAATTCTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.24

Weight (kDa)

9.92

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01400 AT2G01400
fragaria_vesca	FvH4_4g32380
malus_domestica	MD13G1025800.v1.1 MD16G1028600.v1.1
prunus_persica	Prupe.1G324100_v2.0.a1
pyrus_communis	pycom13g02440 pycom16g02450
rosa_chinensis	RchiOBHm_Chr4g0441211
rosa_laevigata	RLG00000006111
rosa_multiflora	Rmu_co7962724.1_g000001 Rmu_sc0006317.1_g000028
rosa_roxburghii	Rroxscaffold_5G00382120
rosa_rugosa	Rorug04G0331500
rosa_samantha	Rh4AG383300 Rh4BG397400 Rh4CG412600 Rh4DG390100
rosa_wichuraiana	Rw4G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	145, 460
AccII	CGCG	2 cut(s)	150, 226
AciI	CCGC	6 cut(s)	140, 219, 236, 239, 455, 578
AcuI	CTGAAG	1 cut(s)	311
AcvI	CACGTG	1 cut(s)	464
AfaI	GTAC	1 cut(s)	569
AfeI	AGCGCT	1 cut(s)	269
AfiI	CCNNNNNNNGG	3 cut(s)	168, 483, 555
AflIII	ACRYGT	2 cut(s)	148, 463
AgsI	TTSAA	3 cut(s)	185, 500, 626
AluBI	AGCT	1 cut(s)	317
AluI	AGCT	1 cut(s)	317
Ama87I	CYCGRG	2 cut(s)	161, 476
Aor51HI	AGCGCT	1 cut(s)	269
AoxI	GGCC	1 cut(s)	599
ApeKI	GCWGC	3 cut(s)	110, 204, 425
ArsI	GACNNNNNNTTYG	2 cut(s)	138, 170
Asp700I	GAANNNNTTC	3 cut(s)	56, 371, 630
AspLEI	GCGC	1 cut(s)	270
AsuHPI	GGTGA	2 cut(s)	109, 567
AvaI	CYCGRG	2 cut(s)	161, 476
BarI	GAAGNNNNNNTAC	2 cut(s)	551, 583
BbrPI	CACGTG	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	3 cut(s)	122, 216, 437
BccI	CCATC	2 cut(s)	580, 589
BfaI	CTAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	271
BfuAI	ACCTGC	2 cut(s)	145, 460
BisI	GCNGC	4 cut(s)	111, 205, 237, 426
BlsI	GCNGC	4 cut(s)	112, 206, 238, 427
BmeT110I	CYCGRG	2 cut(s)	161, 476
BmiI	GGNNCC	1 cut(s)	363
BmrI	ACTGGG	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	37
BsaAI	YACGTR	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 483, 555
Bse1I	ACTGG	5 cut(s)	111, 128, 253, 426, 443
Bse3DI	GCAATG	2 cut(s)	214, 608
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	3 cut(s)	168, 483, 555
BseMI	GCAATG	2 cut(s)	214, 608
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	5 cut(s)	111, 128, 253, 426, 443
BseXI	GCAGC	3 cut(s)	122, 216, 437
Bsh1236I	CGCG	2 cut(s)	150, 226
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	601
BsiEI	CGRYCG	1 cut(s)	243
BsiHKCI	CYCGRG	2 cut(s)	161, 476
BslFI	GGGAC	2 cut(s)	115, 430
BslI	CCNNNNNNNGG	3 cut(s)	168, 483, 555
BsmFI	GGGAC	2 cut(s)	115, 430
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	601
BsoBI	CYCGRG	2 cut(s)	161, 476
Bsp143I	GATC	2 cut(s)	165, 480
BspACI	CCGC	6 cut(s)	140, 219, 236, 239, 455, 578
BspANI	GGCC	1 cut(s)	601
BspCNI	CTCAG	1 cut(s)	616
BspFNI	CGCG	2 cut(s)	150, 226
BspLI	GGNNCC	1 cut(s)	363
BspMI	ACCTGC	2 cut(s)	145, 460
BsrDI	GCAATG	2 cut(s)	214, 608
BsrI	ACTGG	5 cut(s)	111, 128, 253, 426, 443
BssMI	GATC	2 cut(s)	165, 480
Bst6I	CTCTTC	3 cut(s)	305, 330, 382
BstBAI	YACGTR	1 cut(s)	464
BstDEI	CTNAG	1 cut(s)	603
BstF5I	GGATG	1 cut(s)	432
BstFNI	CGCG	2 cut(s)	150, 226
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	2 cut(s)	168, 483
BstMBI	GATC	2 cut(s)	165, 480
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 265, 368
BstUI	CGCG	2 cut(s)	150, 226
BstV1I	GCAGC	3 cut(s)	122, 216, 437
BstV2I	GAAGAC	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	601
BtgZI	GCGATG	1 cut(s)	567
BtsCI	GGATG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	104, 419
BveI	ACCTGC	2 cut(s)	145, 460
CfoI	GCGC	1 cut(s)	270
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	568
CviJI	RGCY	7 cut(s)	47, 56, 317, 362, 371, 541, 601
CviKI_1	RGCY	7 cut(s)	47, 56, 317, 362, 371, 541, 601
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	1 cut(s)	603
DpnI	GATC	2 cut(s)	167, 482
DpnII	GATC	2 cut(s)	165, 480
Eam1104I	CTCTTC	3 cut(s)	305, 330, 382
EarI	CTCTTC	3 cut(s)	305, 330, 382
Eco147I	AGGCCT	1 cut(s)	601
Eco47III	AGCGCT	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	311
Eco72I	CACGTG	1 cut(s)	464
Eco88I	CYCGRG	2 cut(s)	161, 476
FaqI	GGGAC	2 cut(s)	115, 430
Fnu4HI	GCNGC	4 cut(s)	111, 205, 237, 426
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	4 cut(s)	111, 205, 237, 426
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	4 cut(s)	111, 205, 237, 426
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	1 cut(s)	601
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	270
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HphI	GGTGA	2 cut(s)	109, 567
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	6 cut(s)	51, 62, 245, 366, 377, 606
Hpy188III	TCNNGA	5 cut(s)	161, 169, 384, 476, 484
Hpy8I	GTNNAC	1 cut(s)	285
HpyAV	CCTTC	6 cut(s)	67, 131, 382, 446, 553, 583
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	2 cut(s)	13, 204
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 265, 368
HpyF3I	CTNAG	1 cut(s)	603
HpySE526I	ACGT	1 cut(s)	463
HspAI	GCGC	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	165, 480
LmnI	GCTCC	2 cut(s)	367, 520
Lsp1109I	GCAGC	3 cut(s)	122, 216, 437
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	1 cut(s)	463
MalI	GATC	2 cut(s)	167, 482
MboI	GATC	2 cut(s)	165, 480
MluCI	AATT	1 cut(s)	630
MluI	ACGCGT	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	7 cut(s)	19, 37, 333, 334, 352, 556, 612
MroXI	GAANNNNTTC	3 cut(s)	56, 371, 630
Mva1269I	GAATGC	1 cut(s)	191
MvnI	CGCG	2 cut(s)	150, 226
MwoI	GCNNNNNNNGC	3 cut(s)	53, 265, 368
NdeII	GATC	2 cut(s)	165, 480
NlaIV	GGNNCC	1 cut(s)	363
PceI	AGGCCT	1 cut(s)	601
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PctI	GAATGC	1 cut(s)	191
PdmI	GAANNNNTTC	3 cut(s)	56, 371, 630
PkrI	GCNGC	4 cut(s)	112, 206, 238, 427
PmaCI	CACGTG	1 cut(s)	464
PmlI	CACGTG	1 cut(s)	464
Ppu21I	YACGTR	1 cut(s)	464
PspCI	CACGTG	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	363
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SatI	GCNGC	4 cut(s)	111, 205, 237, 426
Sau3AI	GATC	2 cut(s)	165, 480
SetI	ASST	5 cut(s)	139, 319, 454, 466, 622
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	1 cut(s)	630
SseBI	AGGCCT	1 cut(s)	601
SsiI	CCGC	6 cut(s)	140, 219, 236, 239, 455, 578
SspMI	CTAG	1 cut(s)	198
StuI	AGGCCT	1 cut(s)	601
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	1 cut(s)	272
TasI	AATT	1 cut(s)	630
TauI	GCSGC	1 cut(s)	239
TscAI	CASTG	2 cut(s)	111, 426
TseI	GCWGC	3 cut(s)	110, 204, 425
TspRI	CASTG	2 cut(s)	111, 426
XmnI	GAANNNNTTC	3 cut(s)	56, 371, 630
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.