Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0012227

Physical Location & Seq

Genomic Coordinates Reverse (-)

1634785 .. 1636097

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g02520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGACATCCATGTCGACGATCGATGACAACATCAAGAAGCCCGATGCCAATTCATCTGCAATTCCTGACGATTTTATTTGCCCAATATCTTTGGAACTCATGAGGGATCCTGTTATTGTGGCCACAGGTCAGACGTATGAGAGATCTTACATACAGAGATGGGTGGATTGTGGGAACACAACATGTCCGAAAACTCAGCAAAAGCTGCTGAATTTGACACTAACTCCGAACTATGTTTTGAGAAGTTTGATTGCTCAGTGGTGTATTAACAACAATATAGAGCAGCCTGCCGGGAAGATTAAGAAGAGTGATGGATCATTCCGTGACATTACTGGGGACATAGCGACGTTCCAAGCCTTGGTTCGCAAGCTCTCCAGTCGATCAATTGAGGAGCGCAGAGCTGCTGTAGCTGAGATTCGATCGCTGTCCAAAAGAAACACTGATAACAGAATACTAATTGCGGAAGCAGGTGCCATACCAGTTCTGGTCAACCTATTAACATCAGAAGATGGACTAACACAAGAGAATGCAGTAACTTCCGTTCTCAACCTCTCAATATATGACAATAACAAGGGGCTTATAATGCTTGCCGGTGCTGTTCCTTCCATTGTCCAAGTCCTCAGAGCCGGAAGCATGGAAACAAAAGAGAATGCAGCAGCAACCCTTTTTAGTTTGTCACTTGTTGATGAGAACAAGATAATAATCGGAGCATCCGGGGCAATTCCTGCATTGGTAGAGTTGCTTCAAAATGGGAGCACCAGAGGGAAGAAGGATGCTTCAACGGCATTGTTCAATTTGTGCATTTATCAGGGCAACAAAGGCAGGGCTATCCGTGCGGGGATAGTCACAGCCTTACTCAAGATGCTAACTGATTCGAGCATGGTCGATGAAGCACTGACTATCATGTCAGTTCTTGCTAACCACCAAGAGGCAAAAGTCGCCATTGTAAAGGCAGGCACCATACCTGTTTTGATAGACCTTTTGCGAAGAGGTCTGCCTCGTAACAAAGAGAACGCAGCTGCCATTTTACTTGCCTTGTGCAAGAGAGACAAGGAGAGCCTCGCCTGCATAAGTAGGCTTGGTGCGGTGATACCCTTGACAGAGCTCGTTAGGAGCGGCACGGTGAGGGCCAAACGGAAGGCAACTTCGTTGTTGGAGCATCTTCAAAAAGTACAGCAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0031647 GO:0031648 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051865 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:2000022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

395

Amino Acids

42.69

Weight (kDa)

9.26

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	21 - 91	5.4e-20	U-box domain
ARM_ARMC5	PF24768	118 - 303	2.8e-11	ARMC5
ARM_PUB	PF25598	120 - 390	6.4e-25	Plant U-box protein ARM repeat region
Arm	PF00514	146 - 185	8.6e-09	Armadillo/beta-catenin-like repeat
Arm	PF00514	229 - 267	3.1e-08	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23030 AT1G71020 AT1G71020
fragaria_vesca	FvH4_4g32300
malus_domestica	MD13G1026300.v1.1 MD16G1029300.v1.1
prunus_persica	Prupe.1G323500_v2.0.a1
pyrus_communis	pycom16g02520
rosa_chinensis	RchiOBHm_Chr4g0441091
rosa_laevigata	RLG00000006115
rosa_multiflora	Rmu_co8350821.1_g000001 Rmu_sc0006317.1_g000015
rosa_roxburghii	Rroxscaffold_5G00382050
rosa_rugosa	Rorug04G0331000
rosa_samantha	Rh4AG382600 Rh4BG396400 Rh4CG411500 Rh4DG389200
rosa_wichuraiana	Rw4G033020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	581
AarI	CACCTGC	1 cut(s)	458
AasI	GACNNNNNNGTC	2 cut(s)	10, 904
Acc36I	ACCTGC	1 cut(s)	458
AccB1I	GGYRCC	2 cut(s)	470, 956
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccBSI	CCGCTC	1 cut(s)	1116
AccI	GTMKAC	1 cut(s)	14
AciI	CCGC	4 cut(s)	461, 836, 1085, 1116
AclWI	GGATC	3 cut(s)	101, 114, 322
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	1 cut(s)	1173
AfiI	CCNNNNNNNGG	2 cut(s)	358, 928
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	4 cut(s)	746, 780, 793, 1166
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AluBI	AGCT	7 cut(s)	205, 370, 401, 410, 1019, 1105, 1180
AluI	AGCT	7 cut(s)	205, 370, 401, 410, 1019, 1105, 1180
Alw21I	GWGCWC	2 cut(s)	758, 1107
Alw26I	GTCTC	1 cut(s)	1041
AlwI	GGATC	3 cut(s)	101, 114, 322
AoxI	GGCC	2 cut(s)	120, 1128
ApeKI	GCWGC	8 cut(s)	205, 283, 401, 653, 656, 1016, 1019, 1177
ApoI	RAATTY	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	1128
AsuC2I	CCSGG	2 cut(s)	292, 715
AsuHPI	GGTGA	2 cut(s)	1099, 1135
BalI	TGGCCA	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	106
BanI	GGYRCC	2 cut(s)	470, 956
BanII	GRGCYC	1 cut(s)	1107
BarI	GAAGNNNNNNTAC	2 cut(s)	726, 758
Bbv12I	GWGCWC	2 cut(s)	758, 1107
BbvI	GCAGC	7 cut(s)	192, 295, 388, 665, 668, 1006, 1028
BccI	CCATC	3 cut(s)	153, 305, 503
BceAI	ACGGC	1 cut(s)	798
BcnI	CCSGG	2 cut(s)	292, 715
BcoDI	GTCTC	1 cut(s)	1041
BfmI	CTRYAG	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	458
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	9 cut(s)	206, 284, 402, 654, 657, 1017, 1020, 1117, 1178
BlsI	GCNGC	9 cut(s)	207, 285, 403, 655, 658, 1018, 1021, 1118, 1179
Bme1390I	CCNGG	2 cut(s)	292, 715
BmgT120I	GGNCC	1 cut(s)	1128
BmiI	GGNNCC	3 cut(s)	108, 472, 958
BmrFI	CCNGG	2 cut(s)	292, 715
BmrI	ACTGGG	1 cut(s)	342
BmsI	GCATC	5 cut(s)	34, 719, 763, 852, 1168
BmuI	ACTGGG	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	842
BpuMI	CCSGG	2 cut(s)	292, 715
Bsa29I	ATCGAT	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	701
BsaJI	CCNNGG	2 cut(s)	357, 714
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 928
Bse118I	RCCGGY	1 cut(s)	590
Bse1I	ACTGG	3 cut(s)	337, 375, 479
Bse8I	GATNNNNATC	1 cut(s)	701
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	357, 714
BseGI	GGATG	3 cut(s)	5, 710, 778
BseJI	GATNNNNATC	1 cut(s)	701
BseLI	CCNNNNNNNGG	2 cut(s)	358, 928
BseMII	CTCAG	4 cut(s)	209, 269, 402, 634
BseNI	ACTGG	3 cut(s)	337, 375, 479
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	7 cut(s)	192, 295, 388, 665, 668, 1006, 1028
Bsh1285I	CGRYCG	2 cut(s)	21, 422
BshFI	GGCC	2 cut(s)	122, 1130
BshNI	GGYRCC	2 cut(s)	470, 956
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	2 cut(s)	21, 422
BsiHKAI	GWGCWC	2 cut(s)	758, 1107
BsiSI	CCGG	4 cut(s)	291, 591, 627, 714
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	358, 928
BsmAI	GTCTC	1 cut(s)	1041
BsmFI	GGGAC	1 cut(s)	350
BsmI	GAATGC	2 cut(s)	532, 655
BsnI	GGCC	2 cut(s)	122, 1130
Bsp1286I	GDGCHC	2 cut(s)	758, 1107
Bsp143I	GATC	6 cut(s)	18, 106, 143, 314, 380, 419
BspACI	CCGC	4 cut(s)	461, 836, 1085, 1116
BspANI	GGCC	2 cut(s)	122, 1130
BspCNI	CTCAG	4 cut(s)	208, 268, 403, 633
BspDI	ATCGAT	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	108, 472, 958
BspMI	ACCTGC	1 cut(s)	458
BspPI	GGATC	3 cut(s)	101, 114, 322
BspT107I	GGYRCC	2 cut(s)	470, 956
BsrBI	CCGCTC	1 cut(s)	1116
BsrFI	RCCGGY	1 cut(s)	590
BsrI	ACTGG	3 cut(s)	337, 375, 479
BssAI	RCCGGY	1 cut(s)	590
BssECI	CCNNGG	2 cut(s)	357, 714
BssMI	GATC	6 cut(s)	18, 106, 143, 314, 380, 419
BssT1I	CCWWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	1123
Bst6I	CTCTTC	2 cut(s)	299, 982
BstAPI	GCANNNNNTGC	2 cut(s)	205, 725
BstC8I	GCNNGC	5 cut(s)	288, 368, 588, 955, 1066
BstDEI	CTNAG	4 cut(s)	195, 255, 411, 620
BstF5I	GGATG	3 cut(s)	5, 710, 778
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	6 cut(s)	21, 109, 146, 317, 383, 422
BstMAI	GTCTC	1 cut(s)	1041
BstMBI	GATC	6 cut(s)	18, 106, 143, 314, 380, 419
BstMCI	CGRYCG	2 cut(s)	21, 422
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	2 cut(s)	290, 713
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	7 cut(s)	192, 295, 388, 665, 668, 1006, 1028
BstX2I	RGATCY	2 cut(s)	106, 143
BstYI	RGATCY	2 cut(s)	106, 143
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	122, 1130
BsuTUI	ATCGAT	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	5, 710, 778
BtsIMutI	CAGTG	3 cut(s)	263, 438, 893
BveI	ACCTGC	1 cut(s)	458
Cac8I	GCNNGC	5 cut(s)	288, 368, 588, 955, 1066
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	590
Cfr13I	GGNCC	1 cut(s)	1128
ClaI	ATCGAT	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	1172
CviAII	CATG	6 cut(s)	10, 100, 183, 634, 880, 904
CviQI	GTAC	1 cut(s)	1172
DdeI	CTNAG	4 cut(s)	195, 255, 411, 620
DpnI	GATC	6 cut(s)	20, 108, 145, 316, 382, 421
DpnII	GATC	6 cut(s)	18, 106, 143, 314, 380, 419
DrdI	GACNNNNNNGTC	2 cut(s)	10, 904
DseDI	GACNNNNNNGTC	2 cut(s)	10, 904
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	2 cut(s)	299, 982
EarI	CTCTTC	2 cut(s)	299, 982
Ecl136II	GAGCTC	1 cut(s)	1105
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	1107
Eco53kI	GAGCTC	1 cut(s)	1105
EcoICRI	GAGCTC	1 cut(s)	1105
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	1107
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	6 cut(s)	13, 103, 186, 637, 883, 907
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	6 cut(s)	9, 99, 182, 633, 879, 903
FauI	CCCGC	1 cut(s)	829
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	9 cut(s)	206, 284, 402, 654, 657, 1017, 1020, 1117, 1178
FokI	GGATG	2 cut(s)	697, 785
FriOI	GRGCYC	1 cut(s)	1107
Fsp4HI	GCNGC	9 cut(s)	206, 284, 402, 654, 657, 1017, 1020, 1117, 1178
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	9 cut(s)	206, 284, 402, 654, 657, 1017, 1020, 1117, 1178
GsuI	CTGGAG	1 cut(s)	358
HaeIII	GGCC	2 cut(s)	122, 1130
HapII	CCGG	4 cut(s)	291, 591, 627, 714
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	6 cut(s)	13, 103, 186, 637, 883, 907
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HincII	GTYRAC	2 cut(s)	15, 490
HindII	GTYRAC	2 cut(s)	15, 490
HinfI	GANTC	2 cut(s)	415, 872
HpaII	CCGG	4 cut(s)	291, 591, 627, 714
HphI	GGTGA	2 cut(s)	1099, 1135
Hpy166II	GTNNAC	2 cut(s)	15, 490
Hpy188I	TCNGA	6 cut(s)	132, 189, 228, 505, 623, 707
Hpy188III	TCNNGA	4 cut(s)	34, 65, 100, 859
Hpy8I	GTNNAC	2 cut(s)	15, 490
Hpy99I	CGWCG	2 cut(s)	19, 349
HpyAV	CCTTC	3 cut(s)	612, 763, 1132
HpyCH4III	ACNGT	1 cut(s)	1123
HpyCH4IV	ACGT	2 cut(s)	134, 347
HpyCH4V	TGCA	7 cut(s)	59, 530, 653, 728, 801, 1041, 1068
HpyF3I	CTNAG	4 cut(s)	195, 255, 411, 620
HpySE526I	ACGT	2 cut(s)	134, 347
Hsp92II	CATG	6 cut(s)	13, 103, 186, 637, 883, 907
HspAI	GCGC	1 cut(s)	394
Kzo9I	GATC	6 cut(s)	18, 106, 143, 314, 380, 419
LmnI	GCTCC	5 cut(s)	391, 707, 753, 1113, 1156
Lsp1109I	GCAGC	7 cut(s)	192, 295, 388, 665, 668, 1006, 1028
LweI	GCATC	5 cut(s)	34, 719, 763, 852, 1168
MaeII	ACGT	2 cut(s)	134, 347
MaeIII	GTNAC	5 cut(s)	323, 532, 675, 844, 1001
MalI	GATC	6 cut(s)	20, 108, 145, 316, 382, 421
MbiI	CCGCTC	1 cut(s)	1116
MboI	GATC	6 cut(s)	18, 106, 143, 314, 380, 419
MboII	GAAGA	6 cut(s)	307, 316, 518, 778, 999, 1154
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	2 cut(s)	106, 143
MhlI	GDGCHC	2 cut(s)	758, 1107
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	7 cut(s)	49, 60, 211, 384, 456, 720, 793
MluNI	TGGCCA	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	1134
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	3 cut(s)	267, 300, 497
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	1019
MspI	CCGG	4 cut(s)	291, 591, 627, 714
MspR9I	CCNGG	2 cut(s)	292, 715
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	2 cut(s)	532, 655
NciI	CCSGG	2 cut(s)	292, 715
NdeII	GATC	6 cut(s)	18, 106, 143, 314, 380, 419
NlaIII	CATG	6 cut(s)	13, 103, 186, 637, 883, 907
NlaIV	GGNNCC	3 cut(s)	108, 472, 958
NmuCI	GTSAC	3 cut(s)	323, 675, 844
NspI	RCATGY	1 cut(s)	186
PagI	TCATGA	1 cut(s)	99
PaqCI	CACCTGC	1 cut(s)	458
PciI	ACATGT	1 cut(s)	182
PctI	GAATGC	2 cut(s)	532, 655
PfeI	GAWTC	2 cut(s)	415, 872
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	9 cut(s)	207, 285, 403, 655, 658, 1018, 1021, 1118, 1179
Ple19I	CGATCG	2 cut(s)	21, 422
PscI	ACATGT	1 cut(s)	182
PsiI	TTATAA	1 cut(s)	581
Psp124BI	GAGCTC	1 cut(s)	1107
PspN4I	GGNNCC	3 cut(s)	108, 472, 958
PspPI	GGNCC	1 cut(s)	1128
PsrI	GAACNNNNNNTAC	2 cut(s)	525, 557
PsuI	RGATCY	2 cut(s)	106, 143
PvuI	CGATCG	2 cut(s)	21, 422
PvuII	CAGCTG	1 cut(s)	1019
RsaI	GTAC	1 cut(s)	1173
RsaNI	GTAC	1 cut(s)	1172
SacI	GAGCTC	1 cut(s)	1107
SalI	GTCGAC	1 cut(s)	13
SaqAI	TTAA	3 cut(s)	267, 300, 497
SatI	GCNGC	9 cut(s)	206, 284, 402, 654, 657, 1017, 1020, 1117, 1178
Sau3AI	GATC	6 cut(s)	18, 106, 143, 314, 380, 419
Sau96I	GGNCC	1 cut(s)	1128
ScrFI	CCNGG	2 cut(s)	292, 715
SduI	GDGCHC	2 cut(s)	758, 1107
SfaNI	GCATC	5 cut(s)	34, 719, 763, 852, 1168
SfcI	CTRYAG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
Sse9I	AATT	7 cut(s)	49, 60, 211, 384, 456, 720, 793
SsiI	CCGC	4 cut(s)	461, 836, 1085, 1116
SstI	GAGCTC	1 cut(s)	1107
StyD4I	CCNGG	2 cut(s)	290, 713
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	1123
TaiI	ACGT	2 cut(s)	137, 350
TaqI	TCGA	6 cut(s)	14, 21, 379, 418, 875, 885
TasI	AATT	7 cut(s)	49, 60, 211, 384, 456, 720, 793
TatI	WGTACW	1 cut(s)	1171
TauI	GCSGC	1 cut(s)	1119
TfiI	GAWTC	2 cut(s)	415, 872
Tru1I	TTAA	3 cut(s)	267, 300, 497
Tru9I	TTAA	3 cut(s)	267, 300, 497
TscAI	CASTG	3 cut(s)	263, 445, 900
TseFI	GTSAC	3 cut(s)	323, 675, 844
TseI	GCWGC	8 cut(s)	205, 283, 401, 653, 656, 1016, 1019, 1177
Tsp45I	GTSAC	3 cut(s)	323, 675, 844
TspDTI	ATGAA	2 cut(s)	42, 903
TspGWI	ACGGA	4 cut(s)	311, 529, 821, 1150
TspRI	CASTG	3 cut(s)	263, 445, 900
Van91I	CCANNNNNTGG	1 cut(s)	358
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	1 cut(s)	186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.