Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0012227

Physical Location & Seq

Genomic Coordinates Forward (+)

54786853 .. 54789624

Gene Structure 2772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG396400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1902 bp

ATGGCCGGCGGAGCTGCCGGCTGCGCGTCGGAGCTTCTGCAACTCGTCAACGACGTCGTCGGCGCTGGAAAGTCCGCCGGCGGAGGAGGTGGCGGCGCCTTCAGGCAGGACTGCACCGATCTGGTGCGGCGGATCGCGCTGCTGACGCATTTGTTCGAGGAGATTAGGAACTTCAAAGGACTCGAATTTCCACCGTTGGATGCTTCCACTTCTTCTTCCTGCTCCACACAGCCGTGGGTTTCCGATCTCGTCACGGCGCTTCAGGCAGCGAAGCGGCTTGTATTGGTGGCCACTAGCTTCAATTCCAATTGTGACGCTCCTGTGCTCGCCGACGAAGCTAGCAAGAGGATAAGCTTCCATTTTCAATGCGCGACGTGGAAATTGGAGAGGGCGCTGGGTGAAATACCGTATGATCAGTTCGAAATATCAGAGGAAGTTGAAGAACAGGTTGCATTGGTTAGAGCACAATTGAGAAGAGCCATAGAAAGATATGGGACCTTGAATACGAGGAAAATGTCTTTTTATGGTCTACCTCAGTCTCTGGTAGAGTCTGGAAAATGGGTGCATGTTATAGAGAATAATAGTAGTTCAAAGATGACAGACAGTCTTCCCAAGAGCTTTAGTGCTGATGATCTGGTTCATAAATCGCAAAGGATGAGCAACTCCTGTGTCTGTGTGGCAGAGGCGCCTTCACTCTGCTCAACAAATGAGACTCATGTTGATGGTGAGGAAGATATGAACAAGAAGCCTGACGCCACTGTCATCCCTGATTTTATATGCCCAATATCTTTGGAACTCATGAGAGATCCTGTTATTGTGGCCACTGGTCAGACATACGAGAGATCTTACATACAGAGATGGATAGACTGCGGAAATACAACATGTCCAAAAACTCAGCAAAAGCTTCAAAATTTGACACTAACTCCAAATTATGTCTTGAGAAGTCTAGTTGCTCAGTGGTGTATTGACAACAACATCGAGCAGCCGACAGGATTAACAAATGGTAAACTCAAGAAGAGTGATGGATCCTTTCGTGACATTAGTGGGGACATAGCGACAATTCGAGCTCTGGTAAGCAAGCTTGCAGGTCGATCAATTGAGGAGCGGAGAGCAGCTGCAGCGGAAATTAGGTCACTGTCCAAAAGAAGTACTGATAACCGAATACTAATTGCAGAAGCGGGTGCTATTCCGGTATTGGTCAATCTCTTAACAGTAGAAGATGGCTTAACACAAGAGAATGCAGTGACTTCCATTCTCAACCTCTCTATATATGAAAACAACAAGGGGCTTATAATGCTTGCGGGTGCTGTTCCTTCTATTGTCCAAGTCCTCAGAGCTGGAAGCATGGAGGCTCGAGAGAACGCAGCAGCGACCATTTTTAGTTTGTCGCTTGCCGATGAGAACAAAATAATTATAGGTGCATCGGGAGCAATTTCAGCTTTGGTGGAATTGCTTCAAAATGGGAGCACAAGAGGGAAGAAGGATGCTGCAACAGCGCTGTTCAATTTGTGCATTTATCAGGGCAACAAGGGCAGAGCTATCAGAGCAGGGATAATTACAGCTTTACTAAAGATGCTAACTGATTCAAGCAATTGCATGGTTGATGAAGCACTGACCATTATGTCAGTTCTTGCTAACCATCAAGAGGCAAAAGTTACTATAGTAAAGGCCGGCACAATACCTGTTTTGATAGACCTTTTGCGGACAGGCCTGCCTCGAAACAAAGAGAACGCATCTGCCATTTTGCTTGCATTGTGCAAGAGAGAGACCGAGAACCTTGCCTGCCTAAGTAGGCTTGGTGCAGTCATACCCTTGACAGAGCTCACTAAGAGCGGAACAGAGAGGGCCAAAAGGAAGGCTAGTTCATTGCTGGAGCATCTTCGGAAGTTGCAGCAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0031647 GO:0031648 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051865 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:2000022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

633

Amino Acids

68.47

Weight (kDa)

7.45

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB10_N	PF25368	35 - 160	2e-40	PUB10-like, N-terminal domain
U-box	PF04564	256 - 324	4.6e-18	U-box domain
ARM_PUB	PF25598	354 - 627	2.4e-23	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	365 - 534	1.9e-09	ARMC5
Arm	PF00514	383 - 422	7.2e-08	Armadillo/beta-catenin-like repeat
Arm	PF00514	466 - 504	4.8e-08	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23030 AT1G71020 AT1G71020
fragaria_vesca	FvH4_4g32300
malus_domestica	MD13G1026300.v1.1 MD16G1029300.v1.1
prunus_persica	Prupe.1G323500_v2.0.a1
pyrus_communis	pycom16g02520
rosa_chinensis	RchiOBHm_Chr4g0441091
rosa_laevigata	RLG00000006115
rosa_multiflora	Rmu_co8350821.1_g000001 Rmu_sc0006317.1_g000015
rosa_roxburghii	Rroxscaffold_5G00382050
rosa_rugosa	Rorug04G0331000
rosa_samantha	Rh4AG382600 Rh4BG396400 Rh4CG411500 Rh4DG389200
rosa_wichuraiana	Rw4G033020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1292
AasI	GACNNNNNNGTC	2 cut(s)	758, 1621
AatII	GACGTC	1 cut(s)	57
Acc36I	ACCTGC	1 cut(s)	1076
AccB1I	GGYRCC	2 cut(s)	95, 685
AccBSI	CCGCTC	2 cut(s)	1105, 1833
AccI	GTMKAC	1 cut(s)	529
AccII	CGCG	3 cut(s)	26, 137, 371
AclWI	GGATC	4 cut(s)	140, 800, 1020, 1033
AcoI	YGGCCR	3 cut(s)	3, 288, 819
AcsI	RAATTY	2 cut(s)	185, 910
AcuI	CTGAAG	2 cut(s)	85, 245
AcyI	GRCGYC	4 cut(s)	54, 96, 686, 753
AfaI	GTAC	1 cut(s)	1150
AfeI	AGCGCT	1 cut(s)	1497
AfiI	CCNNNNNNNGG	1 cut(s)	1645
AflIII	ACRYGT	1 cut(s)	881
AhdI	GACNNNNNGTC	1 cut(s)	603
AjiI	CACGTC	1 cut(s)	375
AleI	CACNNNNGTG	1 cut(s)	232
AloI	GAACNNNNNNTCC	2 cut(s)	1846, 1878
Alw21I	GWGCWC	5 cut(s)	327, 466, 1069, 1469, 1824
Alw26I	GTCTC	3 cut(s)	543, 704, 1760
AlwI	GGATC	4 cut(s)	140, 800, 1020, 1033
AlwNI	CAGNNNCTG	1 cut(s)	541
Ama87I	CYCGRG	1 cut(s)	1353
Aor51HI	AGCGCT	1 cut(s)	1497
AoxI	GGCC	6 cut(s)	3, 288, 819, 1668, 1708, 1845
ApoI	RAATTY	2 cut(s)	185, 910
Asp700I	GAANNNNTTC	1 cut(s)	1452
AspLEI	GCGC	9 cut(s)	26, 65, 98, 139, 259, 371, 394, 688, 1498
AspS9I	GGNCC	2 cut(s)	495, 1845
AsuHPI	GGTGA	2 cut(s)	410, 737
AsuII	TTCGAA	1 cut(s)	420
AsuNHI	GCTAGC	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	1353
AvaII	GGWCC	1 cut(s)	495
BalI	TGGCCA	2 cut(s)	290, 821
BamHI	GGATCC	1 cut(s)	1025
BanI	GGYRCC	2 cut(s)	95, 685
BanII	GRGCYC	2 cut(s)	1069, 1824
BbsI	GAAGAC	1 cut(s)	599
Bbv12I	GWGCWC	5 cut(s)	327, 466, 1069, 1469, 1824
BccI	CCATC	5 cut(s)	716, 852, 1016, 1214, 1647
BceAI	ACGGC	2 cut(s)	217, 270
BcgI	CGANNNNNNTGC	2 cut(s)	1760, 1794
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	3 cut(s)	543, 704, 1760
BfaI	CTAG	4 cut(s)	294, 339, 947, 1860
BfmI	CTRYAG	2 cut(s)	1116, 1659
BfoI	RGCGCY	6 cut(s)	66, 99, 260, 395, 689, 1499
BfuAI	ACCTGC	1 cut(s)	1076
BglII	AGATCT	1 cut(s)	842
BmcAI	AGTACT	1 cut(s)	1150
Bme18I	GGWCC	1 cut(s)	495
BmeRI	GACNNNNNGTC	1 cut(s)	603
BmeT110I	CYCGRG	1 cut(s)	1353
BmgBI	CACGTC	1 cut(s)	375
BmgT120I	GGNCC	2 cut(s)	495, 1845
BmiI	GGNNCC	4 cut(s)	97, 496, 687, 1027
BmsI	GCATC	6 cut(s)	190, 1430, 1474, 1563, 1742, 1885
BmtI	GCTAGC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	599
BpmI	CTGGAG	1 cut(s)	1892
Bpu14I	TTCGAA	1 cut(s)	420
BpuEI	CTTGAG	2 cut(s)	958, 995
BsaHI	GRCGYC	4 cut(s)	54, 96, 686, 753
BsaI	GGTCTC	1 cut(s)	1760
BsaJI	CCNNGG	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	1189
BsaXI	ACNNNNNCTCC	2 cut(s)	907, 937
Bsc4I	CCNNNNNNNGG	1 cut(s)	1645
Bse118I	RCCGGY	4 cut(s)	5, 17, 77, 1670
Bse1I	ACTGG	1 cut(s)	829
Bse3DI	GCAATG	1 cut(s)	1865
BseDI	CCNNGG	1 cut(s)	233
BseGI	GGATG	4 cut(s)	205, 660, 762, 1489
BseLI	CCNNNNNNNGG	1 cut(s)	1645
BseMI	GCAATG	1 cut(s)	1865
BseMII	CTCAG	4 cut(s)	548, 908, 968, 1345
BseNI	ACTGG	1 cut(s)	829
BseRI	GAGGAG	3 cut(s)	99, 173, 1115
BseYI	CCCAGC	1 cut(s)	394
BsgI	GTGCAG	2 cut(s)	97, 1821
Bsh1236I	CGCG	3 cut(s)	26, 137, 371
BshFI	GGCC	6 cut(s)	5, 290, 821, 1670, 1710, 1847
BshNI	GGYRCC	2 cut(s)	95, 685
BsiHKAI	GWGCWC	5 cut(s)	327, 466, 1069, 1469, 1824
BsiHKCI	CYCGRG	1 cut(s)	1353
BsiSI	CCGG	5 cut(s)	6, 18, 78, 1190, 1671
BslFI	GGGAC	2 cut(s)	508, 1061
BslI	CCNNNNNNNGG	1 cut(s)	1645
BsmAI	GTCTC	3 cut(s)	543, 704, 1760
BsmFI	GGGAC	2 cut(s)	508, 1061
BsmI	GAATGC	1 cut(s)	1243
BsnI	GGCC	6 cut(s)	5, 290, 821, 1670, 1710, 1847
Bso31I	GGTCTC	1 cut(s)	1760
BsoBI	CYCGRG	1 cut(s)	1353
Bsp119I	TTCGAA	1 cut(s)	420
Bsp1286I	GDGCHC	5 cut(s)	327, 466, 1069, 1469, 1824
Bsp143I	GATC	9 cut(s)	118, 132, 244, 412, 631, 805, 842, 1025, 1091
BspANI	GGCC	6 cut(s)	5, 290, 821, 1670, 1710, 1847
BspCNI	CTCAG	4 cut(s)	547, 907, 967, 1344
BspFNI	CGCG	3 cut(s)	26, 137, 371
BspHI	TCATGA	1 cut(s)	798
BspLI	GGNNCC	4 cut(s)	97, 496, 687, 1027
BspMAI	CTGCAG	1 cut(s)	1120
BspMI	ACCTGC	1 cut(s)	1076
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	4 cut(s)	140, 800, 1020, 1033
BspQI	GCTCTTC	1 cut(s)	469
BspT104I	TTCGAA	1 cut(s)	420
BspT107I	GGYRCC	2 cut(s)	95, 685
BspTNI	GGTCTC	1 cut(s)	1760
BsrBI	CCGCTC	2 cut(s)	1105, 1833
BsrDI	GCAATG	1 cut(s)	1865
BsrFI	RCCGGY	4 cut(s)	5, 17, 77, 1670
BsrI	ACTGG	1 cut(s)	829
BssAI	RCCGGY	4 cut(s)	5, 17, 77, 1670
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	9 cut(s)	118, 132, 244, 412, 631, 805, 842, 1025, 1091
BssNI	GRCGYC	4 cut(s)	54, 96, 686, 753
Bst4CI	ACNGT	6 cut(s)	195, 408, 605, 760, 1137, 1213
Bst6I	CTCTTC	2 cut(s)	469, 1010
BstACI	GRCGYC	4 cut(s)	54, 96, 686, 753
BstBI	TTCGAA	1 cut(s)	420
BstDEI	CTNAG	6 cut(s)	534, 894, 954, 1331, 1787, 1827
BstDSI	CCRYGG	1 cut(s)	233
BstF5I	GGATG	4 cut(s)	205, 660, 762, 1489
BstFNI	CGCG	3 cut(s)	26, 137, 371
BstH2I	RGCGCY	6 cut(s)	66, 99, 260, 395, 689, 1499
BstHHI	GCGC	9 cut(s)	26, 65, 98, 139, 259, 371, 394, 688, 1498
BstKTI	GATC	9 cut(s)	121, 135, 247, 415, 634, 808, 845, 1028, 1094
BstMAI	GTCTC	3 cut(s)	543, 704, 1760
BstMBI	GATC	9 cut(s)	118, 132, 244, 412, 631, 805, 842, 1025, 1091
BstNSI	RCATGY	2 cut(s)	569, 885
BstSFI	CTRYAG	2 cut(s)	1116, 1659
BstUI	CGCG	3 cut(s)	26, 137, 371
BstV2I	GAAGAC	1 cut(s)	599
BstX2I	RGATCY	3 cut(s)	805, 842, 1025
BstYI	RGATCY	3 cut(s)	805, 842, 1025
BsuRI	GGCC	6 cut(s)	5, 290, 821, 1670, 1710, 1847
BtgI	CCRYGG	1 cut(s)	233
BtrI	CACGTC	1 cut(s)	375
BtsCI	GGATG	4 cut(s)	205, 660, 762, 1489
BtsI	GCAGTG	1 cut(s)	1248
BtsIMutI	CAGTG	6 cut(s)	756, 822, 962, 1133, 1248, 1610
BveI	ACCTGC	1 cut(s)	1076
CaiI	CAGNNNCTG	1 cut(s)	541
CciI	TCATGA	1 cut(s)	798
CfoI	GCGC	9 cut(s)	26, 65, 98, 139, 259, 371, 394, 688, 1498
Cfr10I	RCCGGY	4 cut(s)	5, 17, 77, 1670
Cfr13I	GGNCC	2 cut(s)	495, 1845
CseI	GACGC	4 cut(s)	15, 154, 323, 761
Csp6I	GTAC	1 cut(s)	1149
CviAII	CATG	6 cut(s)	566, 716, 799, 882, 1345, 1597
CviQI	GTAC	1 cut(s)	1149
DdeI	CTNAG	6 cut(s)	534, 894, 954, 1331, 1787, 1827
DinI	GGCGCC	2 cut(s)	97, 687
DpnI	GATC	9 cut(s)	120, 134, 246, 414, 633, 807, 844, 1027, 1093
DpnII	GATC	9 cut(s)	118, 132, 244, 412, 631, 805, 842, 1025, 1091
DrdI	GACNNNNNNGTC	2 cut(s)	758, 1621
DriI	GACNNNNNGTC	1 cut(s)	603
DseDI	GACNNNNNNGTC	2 cut(s)	758, 1621
EaeI	YGGCCR	3 cut(s)	3, 288, 819
Eam1104I	CTCTTC	2 cut(s)	469, 1010
Eam1105I	GACNNNNNGTC	1 cut(s)	603
EarI	CTCTTC	2 cut(s)	469, 1010
EciI	GGCGGA	4 cut(s)	24, 64, 96, 145
Ecl136II	GAGCTC	2 cut(s)	1067, 1822
Eco147I	AGGCCT	1 cut(s)	1710
Eco24I	GRGCYC	2 cut(s)	1069, 1824
Eco31I	GGTCTC	1 cut(s)	1760
Eco47I	GGWCC	1 cut(s)	495
Eco47III	AGCGCT	1 cut(s)	1497
Eco53kI	GAGCTC	2 cut(s)	1067, 1822
Eco57I	CTGAAG	2 cut(s)	85, 245
Eco88I	CYCGRG	1 cut(s)	1353
EcoICRI	GAGCTC	2 cut(s)	1067, 1822
EcoO109I	RGGNCCY	1 cut(s)	495
EcoT38I	GRGCYC	2 cut(s)	1069, 1824
EgeI	GGCGCC	2 cut(s)	97, 687
EheI	GGCGCC	2 cut(s)	97, 687
FaeI	CATG	6 cut(s)	569, 719, 802, 885, 1348, 1600
FaqI	GGGAC	2 cut(s)	508, 1061
FatI	CATG	6 cut(s)	565, 715, 798, 881, 1344, 1596
FauI	CCCGC	2 cut(s)	1171, 1294
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	1 cut(s)	529
FokI	GGATG	4 cut(s)	212, 667, 749, 1496
FriOI	GRGCYC	2 cut(s)	1069, 1824
FspBI	CTAG	4 cut(s)	294, 339, 947, 1860
GlaI	GCGC	9 cut(s)	25, 64, 97, 138, 258, 370, 393, 687, 1497
GsaI	CCCAGC	1 cut(s)	398
GsuI	CTGGAG	1 cut(s)	1892
HaeII	RGCGCY	6 cut(s)	66, 99, 260, 395, 689, 1499
HaeIII	GGCC	6 cut(s)	5, 290, 821, 1670, 1710, 1847
HapII	CCGG	5 cut(s)	6, 18, 78, 1190, 1671
HgaI	GACGC	4 cut(s)	15, 154, 323, 761
HhaI	GCGC	9 cut(s)	26, 65, 98, 139, 259, 371, 394, 688, 1498
Hin1I	GRCGYC	4 cut(s)	54, 96, 686, 753
Hin1II	CATG	6 cut(s)	569, 719, 802, 885, 1348, 1600
Hin6I	GCGC	9 cut(s)	24, 63, 96, 137, 257, 369, 392, 686, 1496
HinP1I	GCGC	9 cut(s)	24, 63, 96, 137, 257, 369, 392, 686, 1496
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	3 cut(s)	352, 902, 1079
HinfI	GANTC	4 cut(s)	180, 548, 712, 1583
HpaII	CCGG	5 cut(s)	6, 18, 78, 1190, 1671
HphI	GGTGA	2 cut(s)	410, 737
Hpy166II	GTNNAC	3 cut(s)	49, 530, 1007
Hpy188I	TCNGA	7 cut(s)	31, 244, 430, 831, 1334, 1544, 1884
Hpy188III	TCNNGA	8 cut(s)	552, 799, 937, 1012, 1034, 1355, 1425, 1643
Hpy8I	GTNNAC	3 cut(s)	49, 530, 1007
Hpy99I	CGWCG	6 cut(s)	31, 56, 59, 62, 335, 376
HpyAV	CCTTC	5 cut(s)	109, 699, 1323, 1474, 1849
HpyCH4III	ACNGT	6 cut(s)	195, 408, 605, 760, 1137, 1213
HpyCH4IV	ACGT	2 cut(s)	54, 374
HpyF3I	CTNAG	6 cut(s)	534, 894, 954, 1331, 1787, 1827
HpySE526I	ACGT	2 cut(s)	54, 374
Hsp92I	GRCGYC	4 cut(s)	54, 96, 686, 753
Hsp92II	CATG	6 cut(s)	569, 719, 802, 885, 1348, 1600
HspAI	GCGC	9 cut(s)	24, 63, 96, 137, 257, 369, 392, 686, 1496
KasI	GGCGCC	2 cut(s)	95, 685
KroI	GCCGGC	4 cut(s)	5, 17, 77, 1670
KroNI	GCCGGC	4 cut(s)	7, 19, 79, 1672
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	9 cut(s)	118, 132, 244, 412, 631, 805, 842, 1025, 1091
LguI	GCTCTTC	1 cut(s)	469
LmnI	GCTCC	8 cut(s)	11, 31, 227, 322, 1102, 1427, 1464, 1873
LweI	GCATC	6 cut(s)	190, 1430, 1474, 1563, 1742, 1885
MaeI	CTAG	4 cut(s)	294, 339, 947, 1860
MaeII	ACGT	2 cut(s)	54, 374
MaeIII	GTNAC	6 cut(s)	250, 311, 1034, 1131, 1243, 1654
MalI	GATC	9 cut(s)	120, 134, 246, 414, 633, 807, 844, 1027, 1093
MbiI	CCGCTC	2 cut(s)	1105, 1833
MboI	GATC	9 cut(s)	118, 132, 244, 412, 631, 805, 842, 1025, 1091
MfeI	CAATTG	4 cut(s)	307, 467, 1095, 1591
MflI	RGATCY	3 cut(s)	805, 842, 1025
MhlI	GDGCHC	5 cut(s)	327, 466, 1069, 1469, 1824
MlsI	TGGCCA	2 cut(s)	290, 821
MluNI	TGGCCA	2 cut(s)	290, 821
Mly113I	GGCGCC	2 cut(s)	96, 686
MlyI	GAGTC	3 cut(s)	174, 557, 706
MmeI	TCCRAC	2 cut(s)	9, 177
Mox20I	TGGCCA	2 cut(s)	290, 821
MreI	CGCCGGCG	1 cut(s)	77
MroNI	GCCGGC	4 cut(s)	5, 17, 77, 1670
MroXI	GAANNNNTTC	1 cut(s)	1452
MscI	TGGCCA	2 cut(s)	290, 821
MseI	TTAA	3 cut(s)	995, 1208, 1226
MslI	CAYNNNNRTG	2 cut(s)	232, 720
Msp20I	TGGCCA	2 cut(s)	290, 821
MspA1I	CMGCKG	2 cut(s)	1115, 1121
MspI	CCGG	5 cut(s)	6, 18, 78, 1190, 1671
MunI	CAATTG	4 cut(s)	307, 467, 1095, 1591
Mva1269I	GAATGC	1 cut(s)	1243
MvnI	CGCG	3 cut(s)	26, 137, 371
NaeI	GCCGGC	4 cut(s)	7, 19, 79, 1672
NarI	GGCGCC	2 cut(s)	96, 686
NdeII	GATC	9 cut(s)	118, 132, 244, 412, 631, 805, 842, 1025, 1091
NgoMIV	GCCGGC	4 cut(s)	5, 17, 77, 1670
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	6 cut(s)	569, 719, 802, 885, 1348, 1600
NlaIV	GGNNCC	4 cut(s)	97, 496, 687, 1027
NmuCI	GTSAC	5 cut(s)	250, 311, 1034, 1131, 1243
NspI	RCATGY	2 cut(s)	569, 885
NspV	TTCGAA	1 cut(s)	420
OliI	CACNNNNGTG	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	1353
PagI	TCATGA	1 cut(s)	798
PceI	AGGCCT	1 cut(s)	1710
PciI	ACATGT	1 cut(s)	881
PciSI	GCTCTTC	1 cut(s)	469
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	1243
PdiI	GCCGGC	4 cut(s)	7, 19, 79, 1672
PdmI	GAANNNNTTC	1 cut(s)	1452
PfeI	GAWTC	1 cut(s)	1583
PflFI	GACNNNGTC	1 cut(s)	56
PleI	GAGTC	3 cut(s)	174, 556, 706
PluTI	GGCGCC	2 cut(s)	99, 689
PpsI	GAGTC	3 cut(s)	174, 556, 706
PpuMI	RGGWCCY	1 cut(s)	495
PscI	ACATGT	1 cut(s)	881
PsiI	TTATAA	1 cut(s)	1292
Psp124BI	GAGCTC	2 cut(s)	1069, 1824
Psp5II	RGGWCCY	1 cut(s)	495
PspFI	CCCAGC	1 cut(s)	394
PspN4I	GGNNCC	4 cut(s)	97, 496, 687, 1027
PspPI	GGNCC	2 cut(s)	495, 1845
PspPPI	RGGWCCY	1 cut(s)	495
PsrI	GAACNNNNNNTAC	2 cut(s)	401, 433
PstI	CTGCAG	1 cut(s)	1120
PstNI	CAGNNNCTG	1 cut(s)	541
PsuI	RGATCY	3 cut(s)	805, 842, 1025
PsyI	GACNNNGTC	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	1115
RsaI	GTAC	1 cut(s)	1150
RsaNI	GTAC	1 cut(s)	1149
RseI	CAYNNNNRTG	2 cut(s)	232, 720
SacI	GAGCTC	2 cut(s)	1069, 1824
SapI	GCTCTTC	1 cut(s)	469
SaqAI	TTAA	3 cut(s)	995, 1208, 1226
Sau3AI	GATC	9 cut(s)	118, 132, 244, 412, 631, 805, 842, 1025, 1091
Sau96I	GGNCC	2 cut(s)	495, 1845
ScaI	AGTACT	1 cut(s)	1150
SchI	GAGTC	3 cut(s)	174, 557, 706
SduI	GDGCHC	5 cut(s)	327, 466, 1069, 1469, 1824
SfaNI	GCATC	6 cut(s)	190, 1430, 1474, 1563, 1742, 1885
SfcI	CTRYAG	2 cut(s)	1116, 1659
SfoI	GGCGCC	2 cut(s)	97, 687
Sfr274I	CTCGAG	1 cut(s)	1353
SfuI	TTCGAA	1 cut(s)	420
SgrAI	CRCCGGYG	1 cut(s)	77
SinI	GGWCC	1 cut(s)	495
SlaI	CTCGAG	1 cut(s)	1353
SmiMI	CAYNNNNRTG	2 cut(s)	232, 720
SmlI	CTYRAG	3 cut(s)	937, 1010, 1353
SmoI	CTYRAG	3 cut(s)	937, 1010, 1353
SseBI	AGGCCT	1 cut(s)	1710
SspDI	GGCGCC	2 cut(s)	95, 685
SspMI	CTAG	4 cut(s)	294, 339, 947, 1860
SstI	GAGCTC	2 cut(s)	1069, 1824
StuI	AGGCCT	1 cut(s)	1710
TaaI	ACNGT	6 cut(s)	195, 408, 605, 760, 1137, 1213
TaiI	ACGT	2 cut(s)	57, 377
TaqI	TCGA	8 cut(s)	156, 183, 420, 978, 1063, 1090, 1354, 1717
TaqII	GACCGA	1 cut(s)	1784
TatI	WGTACW	1 cut(s)	1148
TauI	GCSGC	3 cut(s)	96, 130, 277
TfiI	GAWTC	1 cut(s)	1583
Tru1I	TTAA	3 cut(s)	995, 1208, 1226
Tru9I	TTAA	3 cut(s)	995, 1208, 1226
TscAI	CASTG	6 cut(s)	763, 829, 962, 1140, 1248, 1617
TseFI	GTSAC	5 cut(s)	250, 311, 1034, 1131, 1243
Tsp45I	GTSAC	5 cut(s)	250, 311, 1034, 1131, 1243
TspDTI	ATGAA	5 cut(s)	629, 752, 1287, 1620, 1854
TspRI	CASTG	6 cut(s)	763, 829, 962, 1140, 1248, 1617
Tth111I	GACNNNGTC	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	495
XapI	RAATTY	2 cut(s)	185, 910
XceI	RCATGY	2 cut(s)	569, 885
XhoI	CTCGAG	1 cut(s)	1353
XmiI	GTMKAC	1 cut(s)	529
XmnI	GAANNNNTTC	1 cut(s)	1452
XspI	CTAG	4 cut(s)	294, 339, 947, 1860
ZraI	GACGTC	1 cut(s)	55
ZrmI	AGTACT	1 cut(s)	1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.