Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8350821.1

Orthogroup ID

OG0012227

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 986

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8350821.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

aaaggactcgaatttccacccttggatgcttccacttcttcttcctgctccacacagccgtgggtttccgatctcgtcacggcgcttcaggccgcgaagcggcttgtattggtggccactagcttcaattccaattgtgacgctcctgtgctcgccgatgaagctagcaagaggataagcttccattttcaatgcacgacgtggaaattggagaaggcgttgggtgaaataccgtatgatcagttcgaaatatcagaggaagttgaagaacaggttgcattggttagagcacaattgagaagagccatagaaagatatgggagcttgaatacgaggaaaatgtctttttatggtctacctcagtctctggtagagtctggaaaatgggtgcatgttatagagaataatagtagttcaaagatgacagacagtcttcccaagagctttagtgctgatgatctggttcataaatcgcaaaggatgagcaactcctgtgtggcagaggcgccttcactctgctcaacaaatgagactcatgttgatggtgaggaagatatgaacaagaagcctgacgccactgtcatccctgattttatatgcccaatatctttggaactcatgagagatcctgttattgtggccactggtcaggtatgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0031647 GO:0031648 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051865 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:2000022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

219

Amino Acids

24.16

Weight (kDa)

4.97

Isoelectric Point (pI)

53.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23030 AT1G71020 AT1G71020
fragaria_vesca	FvH4_4g32300
malus_domestica	MD13G1026300.v1.1 MD16G1029300.v1.1
prunus_persica	Prupe.1G323500_v2.0.a1
pyrus_communis	pycom16g02520
rosa_chinensis	RchiOBHm_Chr4g0441091
rosa_laevigata	RLG00000006115
rosa_multiflora	Rmu_co8350821.1_g000001 Rmu_sc0006317.1_g000015
rosa_roxburghii	Rroxscaffold_5G00382050
rosa_rugosa	Rorug04G0331000
rosa_samantha	Rh4AG382600 Rh4BG396400 Rh4CG411500 Rh4DG389200
rosa_wichuraiana	Rw4G033020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	578
AccB1I	GGYRCC	1 cut(s)	505
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	1 cut(s)	95
AciI	CCGC	2 cut(s)	93, 100
AclWI	GGATC	1 cut(s)	620
AcoI	YGGCCR	2 cut(s)	114, 639
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	71
AcyI	GRCGYC	2 cut(s)	506, 573
AdeI	CACNNNGTG	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	5 cut(s)	127, 191, 266, 328, 417
AhdI	GACNNNNNGTC	1 cut(s)	429
AjiI	CACGTC	1 cut(s)	201
AleI	CACNNNNGTG	1 cut(s)	58
AluBI	AGCT	5 cut(s)	123, 164, 180, 324, 444
AluI	AGCT	5 cut(s)	123, 164, 180, 324, 444
Alw21I	GWGCWC	2 cut(s)	153, 292
Alw26I	GTCTC	2 cut(s)	369, 524
AlwI	GGATC	1 cut(s)	620
AlwNI	CAGNNNCTG	1 cut(s)	367
AoxI	GGCC	3 cut(s)	90, 114, 639
ApoI	RAATTY	1 cut(s)	11
AspLEI	GCGC	2 cut(s)	85, 508
AsuHPI	GGTGA	2 cut(s)	236, 557
AsuII	TTCGAA	1 cut(s)	246
AsuNHI	GCTAGC	1 cut(s)	164
BalI	TGGCCA	2 cut(s)	116, 641
BanI	GGYRCC	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	2 cut(s)	153, 292
BccI	CCATC	1 cut(s)	536
BceAI	ACGGC	2 cut(s)	43, 96
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	369, 524
BfaI	CTAG	3 cut(s)	120, 165, 658
BfoI	RGCGCY	2 cut(s)	86, 509
BisI	GCNGC	2 cut(s)	93, 101
BlsI	GCNGC	2 cut(s)	94, 102
BmeRI	GACNNNNNGTC	1 cut(s)	429
BmgBI	CACGTC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	507
BmsI	GCATC	1 cut(s)	16
BmtI	GCTAGC	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	425
Bpu14I	TTCGAA	1 cut(s)	246
BsaHI	GRCGYC	2 cut(s)	506, 573
BsaJI	CCNNGG	2 cut(s)	21, 59
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	649
BseDI	CCNNGG	2 cut(s)	21, 59
BseGI	GGATG	3 cut(s)	31, 486, 582
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	1 cut(s)	649
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	3 cut(s)	92, 116, 641
BshNI	GGYRCC	1 cut(s)	505
BsiHKAI	GWGCWC	2 cut(s)	153, 292
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmAI	GTCTC	2 cut(s)	369, 524
BsnI	GGCC	3 cut(s)	92, 116, 641
Bsp119I	TTCGAA	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	153, 292
Bsp143I	GATC	4 cut(s)	70, 238, 457, 625
BspACI	CCGC	2 cut(s)	93, 100
BspANI	GGCC	3 cut(s)	92, 116, 641
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	618
BspLI	GGNNCC	1 cut(s)	507
BspOI	GCTAGC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	620
BspQI	GCTCTTC	1 cut(s)	295
BspT104I	TTCGAA	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	649
BssECI	CCNNGG	2 cut(s)	21, 59
BssMI	GATC	4 cut(s)	70, 238, 457, 625
BssNI	GRCGYC	2 cut(s)	506, 573
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	3 cut(s)	234, 431, 580
Bst6I	CTCTTC	1 cut(s)	295
BstACI	GRCGYC	2 cut(s)	506, 573
BstBI	TTCGAA	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	153, 166
BstDEI	CTNAG	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	3 cut(s)	31, 486, 582
BstFNI	CGCG	1 cut(s)	95
BstH2I	RGCGCY	2 cut(s)	86, 509
BstHHI	GCGC	2 cut(s)	85, 508
BstKTI	GATC	4 cut(s)	73, 241, 460, 628
BstMAI	GTCTC	2 cut(s)	369, 524
BstMBI	GATC	4 cut(s)	70, 238, 457, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 161
BstNSI	RCATGY	1 cut(s)	395
BstUI	CGCG	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	3 cut(s)	92, 116, 641
BtgI	CCRYGG	1 cut(s)	59
BtrI	CACGTC	1 cut(s)	201
BtsCI	GGATG	3 cut(s)	31, 486, 582
BtsIMutI	CAGTG	2 cut(s)	576, 642
Cac8I	GCNNGC	2 cut(s)	153, 166
CaiI	CAGNNNCTG	1 cut(s)	367
CciI	TCATGA	1 cut(s)	618
CfoI	GCGC	2 cut(s)	85, 508
CseI	GACGC	2 cut(s)	149, 581
CviAII	CATG	3 cut(s)	392, 536, 619
DdeI	CTNAG	1 cut(s)	360
DinI	GGCGCC	1 cut(s)	507
DpnI	GATC	4 cut(s)	72, 240, 459, 627
DpnII	GATC	4 cut(s)	70, 238, 457, 625
DraIII	CACNNNGTG	1 cut(s)	201
DrdI	GACNNNNNNGTC	1 cut(s)	578
DriI	GACNNNNNGTC	1 cut(s)	429
DseDI	GACNNNNNNGTC	1 cut(s)	578
EaeI	YGGCCR	2 cut(s)	114, 639
Eam1104I	CTCTTC	1 cut(s)	295
Eam1105I	GACNNNNNGTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	21
EgeI	GGCGCC	1 cut(s)	507
EheI	GGCGCC	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	3 cut(s)	395, 539, 622
FatI	CATG	3 cut(s)	391, 535, 618
FbaI	TGATCA	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	93, 101
FokI	GGATG	3 cut(s)	38, 493, 569
Fsp4HI	GCNGC	2 cut(s)	93, 101
FspBI	CTAG	3 cut(s)	120, 165, 658
GlaI	GCGC	2 cut(s)	84, 507
GluI	GCNGC	2 cut(s)	93, 101
HaeII	RGCGCY	2 cut(s)	86, 509
HaeIII	GGCC	3 cut(s)	92, 116, 641
HgaI	GACGC	2 cut(s)	149, 581
HhaI	GCGC	2 cut(s)	85, 508
Hin1I	GRCGYC	2 cut(s)	506, 573
Hin1II	CATG	3 cut(s)	395, 539, 622
Hin6I	GCGC	2 cut(s)	83, 506
HinP1I	GCGC	2 cut(s)	83, 506
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	3 cut(s)	6, 374, 532
HphI	GGTGA	2 cut(s)	236, 557
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	2 cut(s)	70, 256
Hpy188III	TCNNGA	2 cut(s)	378, 619
Hpy8I	GTNNAC	1 cut(s)	356
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	208, 519
HpyCH4III	ACNGT	3 cut(s)	234, 431, 580
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	3 cut(s)	195, 278, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 161
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	1 cut(s)	200
Hsp92I	GRCGYC	2 cut(s)	506, 573
Hsp92II	CATG	3 cut(s)	395, 539, 622
HspAI	GCGC	2 cut(s)	83, 506
KasI	GGCGCC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	70, 238, 457, 625
LguI	GCTCTTC	1 cut(s)	295
LmnI	GCTCC	3 cut(s)	53, 148, 321
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	3 cut(s)	120, 165, 658
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	2 cut(s)	76, 137
MalI	GATC	4 cut(s)	72, 240, 459, 627
MboI	GATC	4 cut(s)	70, 238, 457, 625
MboII	GAAGA	6 cut(s)	30, 33, 278, 312, 425, 563
MfeI	CAATTG	2 cut(s)	133, 293
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	2 cut(s)	153, 292
MlsI	TGGCCA	2 cut(s)	116, 641
MluCI	AATT	5 cut(s)	11, 127, 133, 206, 293
MluNI	TGGCCA	2 cut(s)	116, 641
Mly113I	GGCGCC	1 cut(s)	506
MlyI	GAGTC	2 cut(s)	383, 526
MnlI	CCTC	6 cut(s)	165, 250, 327, 369, 496, 541
Mox20I	TGGCCA	2 cut(s)	116, 641
MscI	TGGCCA	2 cut(s)	116, 641
MslI	CAYNNNNRTG	2 cut(s)	58, 540
Msp20I	TGGCCA	2 cut(s)	116, 641
MunI	CAATTG	2 cut(s)	133, 293
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	89, 161
NarI	GGCGCC	1 cut(s)	506
NdeII	GATC	4 cut(s)	70, 238, 457, 625
NheI	GCTAGC	1 cut(s)	164
NlaIII	CATG	3 cut(s)	395, 539, 622
NlaIV	GGNNCC	1 cut(s)	507
NmuCI	GTSAC	2 cut(s)	76, 137
NspI	RCATGY	1 cut(s)	395
NspV	TTCGAA	1 cut(s)	246
OliI	CACNNNNGTG	1 cut(s)	58
PagI	TCATGA	1 cut(s)	618
PciSI	GCTCTTC	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	94, 102
PleI	GAGTC	2 cut(s)	382, 526
PluTI	GGCGCC	1 cut(s)	509
PpsI	GAGTC	2 cut(s)	382, 526
PspN4I	GGNNCC	1 cut(s)	507
PsrI	GAACNNNNNNTAC	2 cut(s)	227, 259
PstNI	CAGNNNCTG	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	625
RseI	CAYNNNNRTG	2 cut(s)	58, 540
SapI	GCTCTTC	1 cut(s)	295
SatI	GCNGC	2 cut(s)	93, 101
Sau3AI	GATC	4 cut(s)	70, 238, 457, 625
SchI	GAGTC	2 cut(s)	383, 526
SduI	GDGCHC	2 cut(s)	153, 292
SetI	ASST	9 cut(s)	125, 166, 182, 203, 276, 326, 361, 446, 654
SfaNI	GCATC	1 cut(s)	16
SfoI	GGCGCC	1 cut(s)	507
SfuI	TTCGAA	1 cut(s)	246
SmiMI	CAYNNNNRTG	2 cut(s)	58, 540
Sse9I	AATT	5 cut(s)	11, 127, 133, 206, 293
SsiI	CCGC	2 cut(s)	93, 100
SspDI	GGCGCC	1 cut(s)	505
SspMI	CTAG	3 cut(s)	120, 165, 658
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	3 cut(s)	234, 431, 580
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	2 cut(s)	9, 246
TasI	AATT	5 cut(s)	11, 127, 133, 206, 293
TauI	GCSGC	2 cut(s)	95, 103
TscAI	CASTG	2 cut(s)	583, 649
TseFI	GTSAC	2 cut(s)	76, 137
Tsp45I	GTSAC	2 cut(s)	76, 137
TspDTI	ATGAA	3 cut(s)	174, 455, 572
TspRI	CASTG	2 cut(s)	583, 649
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	355
XspI	CTAG	3 cut(s)	120, 165, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.