pycom16g03480

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0014004
Physical Location & Seq
Forward (+)
2153598 .. 2154793
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 993 bp
ATGTCCGCAACCCGCAACCGTCTCTCTCCCACCGTCTACCACCTATATACACACATACATATATTATACATATACGATTCCAATCAACTAAATTACATCATTAAAGGGTTAAAATCCTTAGAGGAGGGTGGTCGACCCTCTTTTTATTATCCTGTGTATAAATACCCCAACACATGCAACAACTCCCCTGCATCCTCCATTTCCCTTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCACTTCATTTCTCTATCTTAAAATCAAGCATGGCCGAGGCTGCAGAGCTTCACTATGAACCCAAACCAACCAACAACACAACTACACGCTTAAAACTCTTCGGTTTCAATGTCCAAGAAGACGACGTAGAATCATCAGCCGTACTCGACTCCACCAAGACCGCCACAACCCCTTCCGGCTCACCTGAATCCGCCCCCTTCTCCACCTCCGGCGACCGTAAATATGAGTGCCAGTACTGCTGCCGTGAATTCGCCAACTCCCAAGCCCTCGGTGGCCACCAGAACGCCCACAAGAAAGAGCGCCAGCAGCTCAAGCGAGCTCAGCTCCAAGCCAGCAGAAACGCCACCGTCTCCTACGCCCGAAATCCCATCATCACCGCCTTCGCTCCGCCGCCTCACCTCCTCTCTCCGGCCGGATCCGTGATGGCTCCGGCGGCATCTCCGGCGAACCCGTCGTGGGTTTACGTCCAGCGCGCGACCACCCCGTTCCATGTATCGCACGGGTGCGTGTTTCCCGCGGGGACCAATCACGGGAGGGCTGCAGGAAGTTATTCCTACGGTGGCGGTGTAGGGGATTCCGCATTGACTTCAATGGGGCCGGCTCATCATCAGGTACTACAACAGGGCCGGGCCCACGGGAGAGCGGATGGGCCGTCGTTGAGTAGGTTCACGAAGGGGGATGTTGGGCCCAGTTTCGACGATGCATTGGGCTTGGACTTGCATCTCAGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

331

Amino Acids

35.6

Weight (kDa)

8.86

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68360
fragaria_vesca FvH4_4g27020
malus_domestica MD13G1039200.v1.1 MD16G1040100.v1.1
prunus_persica Prupe.1G314000_v2.0.a1
pyrus_communis pycom13g03370 pycom16g03480
rosa_chinensis RchiOBHm_Chr4g0434821
rosa_laevigata RLG00000006645
rosa_multiflora Rmu_sc0000179.1_g000005
rosa_roxburghii Rroxscaffold_5G00376030
rosa_rugosa Rorug04G0279200
rosa_samantha Rh4AG335200 Rh4BG343700 Rh4CG358100 Rh4DG337600
rosa_wichuraiana Rw4G029230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 902
AccI GTMKAC 2 cut(s) 36, 133
AccII CGCG 3 cut(s) 732, 734, 776
AclWI GGATC 2 cut(s) 669, 682
AcoI YGGCCR 3 cut(s) 291, 532, 669
AcsI RAATTY 1 cut(s) 506
AfaI GTAC 3 cut(s) 402, 494, 873
AfiI CCNNNNNNNGG 3 cut(s) 667, 715, 789
AgsI TTSAA 2 cut(s) 367, 849
AluBI AGCT 4 cut(s) 307, 568, 578, 583
AluI AGCT 4 cut(s) 307, 568, 578, 583
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 2 cut(s) 26, 613
AlwI GGATC 2 cut(s) 669, 682
AoxI GGCC 8 cut(s) 291, 532, 669, 854, 883, 888, 908, 944
ApaI GGGCCC 2 cut(s) 892, 948
ApeKI GCWGC 4 cut(s) 299, 498, 565, 797
ApoI RAATTY 1 cut(s) 506
Asp700I GAANNNNTTC 1 cut(s) 808
AspLEI GCGC 3 cut(s) 561, 732, 734
AspS9I GGNCC 8 cut(s) 780, 854, 883, 888, 889, 908, 944, 945
AsuC2I CCSGG 1 cut(s) 887
AsuHPI GGTGA 3 cut(s) 432, 625, 647
AvaII GGWCC 1 cut(s) 780
BaeGI GKGCMC 2 cut(s) 892, 948
BalI TGGCCA 1 cut(s) 534
BamHI GGATCC 1 cut(s) 674
BanII GRGCYC 3 cut(s) 580, 892, 948
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 4 cut(s) 286, 485, 577, 784
BccI CCATC 3 cut(s) 635, 676, 899
BceAI ACGGC 3 cut(s) 383, 486, 895
BcnI CCSGG 1 cut(s) 887
BcoDI GTCTC 2 cut(s) 26, 613
BfmI CTRYAG 2 cut(s) 300, 798
BfoI RGCGCY 1 cut(s) 562
BisI GCNGC 6 cut(s) 300, 499, 566, 650, 693, 798
BlpI GCTNAGC 1 cut(s) 579
BlsI GCNGC 6 cut(s) 301, 500, 567, 651, 694, 799
BmcAI AGTACT 1 cut(s) 494
Bme1390I CCNGG 1 cut(s) 887
Bme18I GGWCC 1 cut(s) 780
BmgT120I GGNCC 8 cut(s) 780, 854, 883, 888, 889, 908, 944, 945
BmiI GGNNCC 6 cut(s) 676, 687, 781, 855, 890, 946
BmrFI CCNGG 1 cut(s) 887
BmrI ACTGGG 1 cut(s) 942
BmsI GCATC 4 cut(s) 200, 704, 949, 988
BmuI ACTGGG 1 cut(s) 942
BpiI GAAGAC 1 cut(s) 384
BplI GAGNNNNNCTC 2 cut(s) 567, 599
Bpu1102I GCTNAGC 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 554
BpuMI CCSGG 1 cut(s) 887
BsaBI GATNNNNATC 1 cut(s) 81
BsaJI CCNNGG 4 cut(s) 294, 526, 774, 892
Bsc4I CCNNNNNNNGG 3 cut(s) 667, 715, 789
Bse118I RCCGGY 1 cut(s) 856
Bse1I ACTGG 2 cut(s) 490, 948
Bse8I GATNNNNATC 1 cut(s) 81
BseDI CCNNGG 4 cut(s) 294, 526, 774, 892
BseGI GGATG 3 cut(s) 191, 910, 943
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 3 cut(s) 667, 715, 789
BseMII CTCAG 1 cut(s) 593
BseNI ACTGG 2 cut(s) 490, 948
BsePI GCGCGC 1 cut(s) 730
BseRI GAGGAG 2 cut(s) 137, 650
BseSI GKGCMC 2 cut(s) 892, 948
BseX3I CGGCCG 1 cut(s) 669
BseXI GCAGC 4 cut(s) 286, 485, 577, 784
Bsh1236I CGCG 3 cut(s) 732, 734, 776
Bsh1285I CGRYCG 2 cut(s) 475, 672
BshFI GGCC 8 cut(s) 293, 534, 671, 856, 885, 890, 910, 946
BsiEI CGRYCG 2 cut(s) 475, 672
BsiHKAI GWGCWC 1 cut(s) 580
BsiSI CCGG 8 cut(s) 435, 468, 668, 672, 689, 701, 857, 886
BslFI GGGAC 1 cut(s) 793
BslI CCNNNNNNNGG 3 cut(s) 667, 715, 789
BsmAI GTCTC 2 cut(s) 26, 613
BsmBI CGTCTC 2 cut(s) 26, 613
BsmFI GGGAC 1 cut(s) 793
BsnI GGCC 8 cut(s) 293, 534, 671, 856, 885, 890, 910, 946
Bsp120I GGGCCC 2 cut(s) 888, 944
Bsp1286I GDGCHC 3 cut(s) 580, 892, 948
Bsp143I GATC 1 cut(s) 674
Bsp1720I GCTNAGC 1 cut(s) 579
BspANI GGCC 8 cut(s) 293, 534, 671, 856, 885, 890, 910, 946
BspCNI CTCAG 1 cut(s) 592
BspFNI CGCG 3 cut(s) 732, 734, 776
BspLI GGNNCC 6 cut(s) 676, 687, 781, 855, 890, 946
BspMAI CTGCAG 2 cut(s) 304, 802
BspPI GGATC 2 cut(s) 669, 682
BsrBI CCGCTC 1 cut(s) 902
BsrFI RCCGGY 1 cut(s) 856
BsrI ACTGG 2 cut(s) 490, 948
BssAI RCCGGY 1 cut(s) 856
BssECI CCNNGG 4 cut(s) 294, 526, 774, 892
BssHII GCGCGC 1 cut(s) 730
BssMI GATC 1 cut(s) 674
Bst4CI ACNGT 5 cut(s) 20, 34, 476, 607, 818
Bst6I CTCTTC 1 cut(s) 362
BstC8I GCNNGC 5 cut(s) 563, 576, 592, 732, 858
BstDEI CTNAG 3 cut(s) 118, 579, 983
BstDSI CCRYGG 2 cut(s) 774, 892
BstF5I GGATG 3 cut(s) 191, 910, 943
BstFNI CGCG 3 cut(s) 732, 734, 776
BstH2I RGCGCY 1 cut(s) 562
BstHHI GCGC 3 cut(s) 561, 732, 734
BstKTI GATC 1 cut(s) 677
BstMAI GTCTC 2 cut(s) 26, 613
BstMBI GATC 1 cut(s) 674
BstMCI CGRYCG 2 cut(s) 475, 672
BstMWI GCNNNNNNNGC 7 cut(s) 299, 495, 565, 571, 580, 692, 701
BstNSI RCATGY 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 885
BstSFI CTRYAG 2 cut(s) 300, 798
BstSLI GKGCMC 2 cut(s) 892, 948
BstUI CGCG 3 cut(s) 732, 734, 776
BstV1I GCAGC 4 cut(s) 286, 485, 577, 784
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 674
BstYI RGATCY 1 cut(s) 674
BstZI CGGCCG 1 cut(s) 669
BsuRI GGCC 8 cut(s) 293, 534, 671, 856, 885, 890, 910, 946
BtgI CCRYGG 2 cut(s) 774, 892
BtsCI GGATG 3 cut(s) 191, 910, 943
Cac8I GCNNGC 5 cut(s) 563, 576, 592, 732, 858
CfoI GCGC 3 cut(s) 561, 732, 734
Cfr10I RCCGGY 1 cut(s) 856
Cfr13I GGNCC 8 cut(s) 780, 854, 883, 888, 889, 908, 944, 945
Cfr42I CCGCGG 1 cut(s) 777
Csp6I GTAC 3 cut(s) 401, 493, 872
CviAII CATG 3 cut(s) 174, 289, 749
CviQI GTAC 3 cut(s) 401, 493, 872
DdeI CTNAG 3 cut(s) 118, 579, 983
DpnI GATC 1 cut(s) 676
DpnII GATC 1 cut(s) 674
EaeI YGGCCR 3 cut(s) 291, 532, 669
EagI CGGCCG 1 cut(s) 669
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
EciI GGCGGA 2 cut(s) 439, 636
Ecl136II GAGCTC 1 cut(s) 578
EclXI CGGCCG 1 cut(s) 669
Eco24I GRGCYC 3 cut(s) 580, 892, 948
Eco47I GGWCC 1 cut(s) 780
Eco52I CGGCCG 1 cut(s) 669
Eco53kI GAGCTC 1 cut(s) 578
EcoICRI GAGCTC 1 cut(s) 578
EcoRI GAATTC 1 cut(s) 506
EcoT22I ATGCAT 1 cut(s) 964
EcoT38I GRGCYC 3 cut(s) 580, 892, 948
Esp3I CGTCTC 2 cut(s) 26, 613
FaeI CATG 3 cut(s) 177, 292, 752
FaqI GGGAC 1 cut(s) 793
FatI CATG 3 cut(s) 173, 288, 748
FauI CCCGC 3 cut(s) 20, 769, 781
FblI GTMKAC 2 cut(s) 36, 133
Fnu4HI GCNGC 6 cut(s) 300, 499, 566, 650, 693, 798
FokI GGATG 3 cut(s) 178, 917, 950
FriOI GRGCYC 3 cut(s) 580, 892, 948
Fsp4HI GCNGC 6 cut(s) 300, 499, 566, 650, 693, 798
GlaI GCGC 3 cut(s) 560, 731, 733
GluI GCNGC 6 cut(s) 300, 499, 566, 650, 693, 798
HaeII RGCGCY 1 cut(s) 562
HaeIII GGCC 8 cut(s) 293, 534, 671, 856, 885, 890, 910, 946
HapII CCGG 8 cut(s) 435, 468, 668, 672, 689, 701, 857, 886
HhaI GCGC 3 cut(s) 561, 732, 734
Hin1II CATG 3 cut(s) 177, 292, 752
Hin6I GCGC 3 cut(s) 559, 730, 732
HinP1I GCGC 3 cut(s) 559, 730, 732
HincII GTYRAC 1 cut(s) 134
HindII GTYRAC 1 cut(s) 134
HinfI GANTC 5 cut(s) 77, 389, 407, 446, 833
HpaII CCGG 8 cut(s) 435, 468, 668, 672, 689, 701, 857, 886
HphI GGTGA 3 cut(s) 432, 625, 647
Hpy166II GTNNAC 4 cut(s) 37, 134, 721, 927
Hpy188III TCNNGA 1 cut(s) 928
Hpy8I GTNNAC 4 cut(s) 37, 134, 721, 927
Hpy99I CGWCG 4 cut(s) 386, 715, 916, 959
HpyAV CCTTC 5 cut(s) 220, 441, 466, 649, 925
HpyCH4III ACNGT 5 cut(s) 20, 34, 476, 607, 818
HpyCH4IV ACGT 2 cut(s) 384, 723
HpyCH4V TGCA 6 cut(s) 177, 191, 302, 800, 962, 979
HpyF10VI GCNNNNNNNGC 7 cut(s) 299, 495, 565, 571, 580, 692, 701
HpyF3I CTNAG 3 cut(s) 118, 579, 983
HpySE526I ACGT 2 cut(s) 384, 723
Hsp92II CATG 3 cut(s) 177, 292, 752
HspAI GCGC 3 cut(s) 559, 730, 732
KroI GCCGGC 1 cut(s) 856
KroNI GCCGGC 1 cut(s) 858
KspI CCGCGG 1 cut(s) 777
Kzo9I GATC 1 cut(s) 674
LmnI GCTCC 3 cut(s) 588, 649, 691
Lsp1109I GCAGC 4 cut(s) 286, 485, 577, 784
LweI GCATC 4 cut(s) 200, 704, 949, 988
MaeII ACGT 2 cut(s) 384, 723
MalI GATC 1 cut(s) 676
MbiI CCGCTC 1 cut(s) 902
MboI GATC 1 cut(s) 674
MboII GAAGA 2 cut(s) 349, 389
MflI RGATCY 1 cut(s) 674
MhlI GDGCHC 3 cut(s) 580, 892, 948
MlsI TGGCCA 1 cut(s) 534
MluCI AATT 2 cut(s) 91, 506
MluNI TGGCCA 1 cut(s) 534
MlyI GAGTC 1 cut(s) 401
Mox20I TGGCCA 1 cut(s) 534
Mph1103I ATGCAT 1 cut(s) 964
MroNI GCCGGC 1 cut(s) 856
MroXI GAANNNNTTC 1 cut(s) 808
MscI TGGCCA 1 cut(s) 534
MseI TTAA 4 cut(s) 102, 110, 278, 350
Msp20I TGGCCA 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 8 cut(s) 435, 468, 668, 672, 689, 701, 857, 886
MspR9I CCNGG 1 cut(s) 887
MvnI CGCG 3 cut(s) 732, 734, 776
MwoI GCNNNNNNNGC 7 cut(s) 299, 495, 565, 571, 580, 692, 701
NaeI GCCGGC 1 cut(s) 858
NciI CCSGG 1 cut(s) 887
NdeII GATC 1 cut(s) 674
NgoMIV GCCGGC 1 cut(s) 856
NlaIII CATG 3 cut(s) 177, 292, 752
NlaIV GGNNCC 6 cut(s) 676, 687, 781, 855, 890, 946
NmeAIII GCCGAG 1 cut(s) 319
NsiI ATGCAT 1 cut(s) 964
NspI RCATGY 1 cut(s) 177
PauI GCGCGC 1 cut(s) 730
PdiI GCCGGC 1 cut(s) 858
PdmI GAANNNNTTC 1 cut(s) 808
PfeI GAWTC 4 cut(s) 77, 389, 446, 833
PkrI GCNGC 6 cut(s) 301, 500, 567, 651, 694, 799
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 580
PspN4I GGNNCC 6 cut(s) 676, 687, 781, 855, 890, 946
PspOMI GGGCCC 2 cut(s) 888, 944
PspPI GGNCC 8 cut(s) 780, 854, 883, 888, 889, 908, 944, 945
PstI CTGCAG 2 cut(s) 304, 802
PsuI RGATCY 1 cut(s) 674
PteI GCGCGC 1 cut(s) 730
RsaI GTAC 3 cut(s) 402, 494, 873
RsaNI GTAC 3 cut(s) 401, 493, 872
SacI GAGCTC 1 cut(s) 580
SacII CCGCGG 1 cut(s) 777
SalI GTCGAC 1 cut(s) 132
SaqAI TTAA 4 cut(s) 102, 110, 278, 350
SatI GCNGC 6 cut(s) 300, 499, 566, 650, 693, 798
Sau3AI GATC 1 cut(s) 674
Sau96I GGNCC 8 cut(s) 780, 854, 883, 888, 889, 908, 944, 945
ScaI AGTACT 1 cut(s) 494
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 887
SduI GDGCHC 3 cut(s) 580, 892, 948
SfaNI GCATC 4 cut(s) 200, 704, 949, 988
SfcI CTRYAG 2 cut(s) 300, 798
Sfr303I CCGCGG 1 cut(s) 777
SgrBI CCGCGG 1 cut(s) 777
SinI GGWCC 1 cut(s) 780
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 2 cut(s) 91, 506
SstI GAGCTC 1 cut(s) 580
StyD4I CCNGG 1 cut(s) 885
TaaI ACNGT 5 cut(s) 20, 34, 476, 607, 818
TaiI ACGT 2 cut(s) 387, 726
TaqI TCGA 3 cut(s) 133, 405, 954
TasI AATT 2 cut(s) 91, 506
TatI WGTACW 1 cut(s) 492
TauI GCSGC 2 cut(s) 652, 695
TfiI GAWTC 4 cut(s) 77, 389, 446, 833
Tru1I TTAA 4 cut(s) 102, 110, 278, 350
Tru9I TTAA 4 cut(s) 102, 110, 278, 350
TseI GCWGC 4 cut(s) 299, 498, 565, 797
TspDTI ATGAA 2 cut(s) 254, 330
TspGWI ACGGA 1 cut(s) 667
VpaK11BI GGWCC 1 cut(s) 780
XapI RAATTY 1 cut(s) 506
XceI RCATGY 1 cut(s) 177
XcmI CCANNNNNNNNNTGG 1 cut(s) 527
XmiI GTMKAC 2 cut(s) 36, 133
XmnI GAANNNNTTC 1 cut(s) 808
ZrmI AGTACT 1 cut(s) 494
Zsp2I ATGCAT 1 cut(s) 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.