pycom16g04680

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012314
Physical Location & Seq
Reverse (-)
3020182 .. 3021018
837 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 744 bp
ATGATAACGACAGAAACAAGTGCACAAACAATGAATATTTCAACGACAATCCGAATGCTTTCCAGTAGTCACCAGTCTGTAAGGCATGCATCGTTGCTGTTCTTGCTTGAACTTTCAAGATCACAATCGTTATGCGAGAAAATTGGGTCAGAGCCGTTGTATTTCAGAGCTCTCGCACAGCTCTCATCATACCATCCAAATGGCAAATTACTACAAGAAGCTGGAATTATACAAGTCATGGTTGAAGAGATGTTCATTAAACAAACCAATGGACTCAAAAGCGAAGCAGCCGCAATCCTTGCAAGTATATTCGAGTCAGGGCATGAGCTCGAGTCCCCGCTAATTCTCATGGTCTCTATGACTTCCGACTATGTTGTGTGCAACATCATCGATATACTCAAGAACGCAACTGCCCAGGTATCAGCAATCGGGTTGGAGAATCTTTCAGCAGAGTCAATAAAACTATCAAAACCGCCACAAATCAAGAGAAAGAAGTCGTTGCACCTGCCCAAGTATCTAACTTGTGGATCACCAAGGAGGAGGAATACACCGCTGTGCCCGGTTCACAGAGGGATATGTTCTTCACAGTACACATCAGCATTGTTGATGCGAAGGCGGTTTAGAGCTGCGTTGTCGGCAATATGTACATTGTTGGATGACAAAGTTGATCATGCTGTGCATCATGTTTTGAATGTGGTGAAAGAGCACAGGAGAAGGGGCTGTGGCAGCAGTCGTTTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm U-box

Protein Analysis

248

Amino Acids

27.39

Weight (kDa)

9.53

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012314)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68940 AT1G68940 AT1G68940
fragaria_vesca FvH4_4g28940
malus_domestica MD13G1055000.v1.1
prunus_persica Prupe.1G295900_v2.0.a1 Prupe.1G295900_v2.0.a1 Prupe.1G295900_v2.0.a1
pyrus_communis pycom16g04680
rosa_chinensis RchiOBHm_Chr4g0437081
rosa_laevigata RLG00000006470
rosa_multiflora Rmu_ssc0000006.1_g000011
rosa_roxburghii Rroxscaffold_5G00378160
rosa_rugosa Rorug04G0298000
rosa_samantha Rh4AG352700 Rh4BG362000 Rh4CG376300 Rh4DG356200
rosa_wichuraiana Rw4G030880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 513
Acc36I ACCTGC 1 cut(s) 513
AciI CCGC 5 cut(s) 291, 338, 473, 551, 616
AclWI GGATC 1 cut(s) 535
AfaI GTAC 2 cut(s) 590, 646
AgsI TTSAA 5 cut(s) 42, 110, 117, 245, 691
AjnI CCWGG 1 cut(s) 414
AleI CACNNNNGTG 1 cut(s) 553
AluBI AGCT 5 cut(s) 170, 181, 221, 328, 626
AluI AGCT 5 cut(s) 170, 181, 221, 328, 626
Alw21I GWGCWC 4 cut(s) 25, 172, 330, 708
Alw26I GTCTC 1 cut(s) 358
Alw44I GTGCAC 1 cut(s) 21
AlwI GGATC 1 cut(s) 535
Ama87I CYCGRG 1 cut(s) 329
ApaLI GTGCAC 1 cut(s) 21
ApeKI GCWGC 3 cut(s) 287, 626, 726
Asp700I GAANNNNTTC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 560
AsuHPI GGTGA 3 cut(s) 62, 522, 709
AvaI CYCGRG 1 cut(s) 329
BaeGI GKGCMC 2 cut(s) 25, 560
BanII GRGCYC 2 cut(s) 172, 330
Bbv12I GWGCWC 4 cut(s) 25, 172, 330, 708
BbvI GCAGC 3 cut(s) 299, 613, 738
BccI CCATC 1 cut(s) 201
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 370, 404
BciT130I CCWGG 1 cut(s) 416
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 1 cut(s) 560
BcoDI GTCTC 1 cut(s) 358
BfuAI ACCTGC 1 cut(s) 513
BisI GCNGC 4 cut(s) 288, 291, 627, 727
BlsI GCNGC 4 cut(s) 289, 292, 628, 728
Bme1390I CCNGG 2 cut(s) 416, 560
BmeT110I CYCGRG 1 cut(s) 329
BmrFI CCNGG 2 cut(s) 416, 560
BmsI GCATC 3 cut(s) 98, 597, 688
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 560
Bsa29I ATCGAT 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 358
BsaJI CCNNGG 2 cut(s) 414, 533
Bse1I ACTGG 2 cut(s) 63, 73
Bse8I GATNNNNATC 1 cut(s) 124
BseBI CCWGG 1 cut(s) 416
BseCI ATCGAT 1 cut(s) 390
BseDI CCNNGG 2 cut(s) 414, 533
BseGI GGATG 2 cut(s) 193, 661
BseJI GATNNNNATC 1 cut(s) 124
BseNI ACTGG 2 cut(s) 63, 73
BseRI GAGGAG 1 cut(s) 553
BseSI GKGCMC 2 cut(s) 25, 560
BseXI GCAGC 3 cut(s) 299, 613, 738
BshVI ATCGAT 1 cut(s) 390
BsiHKAI GWGCWC 4 cut(s) 25, 172, 330, 708
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 560
BslFI GGGAC 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 319
BsmI GAATGC 1 cut(s) 60
Bso31I GGTCTC 1 cut(s) 358
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 5 cut(s) 25, 172, 330, 560, 708
Bsp1407I TGTACA 1 cut(s) 644
Bsp143I GATC 3 cut(s) 119, 527, 667
BspACI CCGC 5 cut(s) 291, 338, 473, 551, 616
BspDI ATCGAT 1 cut(s) 390
BspMI ACCTGC 1 cut(s) 513
BspPI GGATC 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 358
BsrGI TGTACA 1 cut(s) 644
BsrI ACTGG 2 cut(s) 63, 73
BssECI CCNNGG 2 cut(s) 414, 533
BssMI GATC 3 cut(s) 119, 527, 667
BssT1I CCWWGG 1 cut(s) 533
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 1 cut(s) 588
Bst6I CTCTTC 1 cut(s) 240
BstAPI GCANNNNNTGC 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 644
BstC8I GCNNGC 1 cut(s) 87
BstF5I GGATG 2 cut(s) 193, 661
BstKTI GATC 3 cut(s) 122, 530, 670
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 3 cut(s) 119, 527, 667
BstMWI GCNNNNNNNGC 4 cut(s) 103, 299, 635, 726
BstNI CCWGG 1 cut(s) 416
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 2 cut(s) 414, 558
BstSLI GKGCMC 2 cut(s) 25, 560
BstV1I GCAGC 3 cut(s) 299, 613, 738
BstXI CCANNNNNNTGG 1 cut(s) 200
Bsu15I ATCGAT 1 cut(s) 390
BsuTUI ATCGAT 1 cut(s) 390
BtsCI GGATG 2 cut(s) 193, 661
BveI ACCTGC 1 cut(s) 513
Cac8I GCNNGC 1 cut(s) 87
ClaI ATCGAT 1 cut(s) 390
Csp6I GTAC 2 cut(s) 589, 645
CviAII CATG 6 cut(s) 86, 238, 323, 349, 671, 683
CviJI RGCY 8 cut(s) 154, 170, 181, 221, 290, 328, 626, 720
CviKI_1 RGCY 8 cut(s) 154, 170, 181, 221, 290, 328, 626, 720
CviQI GTAC 2 cut(s) 589, 645
DpnI GATC 3 cut(s) 121, 529, 669
DpnII GATC 3 cut(s) 119, 527, 667
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Ecl136II GAGCTC 2 cut(s) 170, 328
Eco130I CCWWGG 1 cut(s) 533
Eco24I GRGCYC 2 cut(s) 172, 330
Eco31I GGTCTC 1 cut(s) 358
Eco53kI GAGCTC 2 cut(s) 170, 328
Eco88I CYCGRG 1 cut(s) 329
EcoICRI GAGCTC 2 cut(s) 170, 328
EcoRII CCWGG 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 533
EcoT22I ATGCAT 1 cut(s) 91
EcoT38I GRGCYC 2 cut(s) 172, 330
ErhI CCWWGG 1 cut(s) 533
FaeI CATG 6 cut(s) 89, 241, 326, 352, 674, 686
FaqI GGGAC 1 cut(s) 319
FatI CATG 6 cut(s) 85, 237, 322, 348, 670, 682
FauI CCCGC 1 cut(s) 345
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 4 cut(s) 288, 291, 627, 727
FokI GGATG 2 cut(s) 180, 668
FriOI GRGCYC 2 cut(s) 172, 330
Fsp4HI GCNGC 4 cut(s) 288, 291, 627, 727
GluI GCNGC 4 cut(s) 288, 291, 627, 727
HapII CCGG 1 cut(s) 560
Hin1II CATG 6 cut(s) 89, 241, 326, 352, 674, 686
HinfI GANTC 5 cut(s) 273, 314, 332, 439, 452
HpaII CCGG 1 cut(s) 560
HphI GGTGA 3 cut(s) 62, 522, 709
Hpy166II GTNNAC 3 cut(s) 23, 565, 591
Hpy188I TCNGA 4 cut(s) 53, 151, 167, 367
Hpy188III TCNNGA 3 cut(s) 117, 400, 484
Hpy8I GTNNAC 3 cut(s) 23, 565, 591
HpyAV CCTTC 2 cut(s) 606, 708
HpyCH4III ACNGT 1 cut(s) 588
HpyCH4V TGCA 6 cut(s) 23, 89, 302, 381, 502, 679
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 299, 635, 726
Hsp92II CATG 6 cut(s) 89, 241, 326, 352, 674, 686
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 3 cut(s) 119, 527, 667
LpnPI CCDG 9 cut(s) 76, 86, 207, 303, 401, 428, 518, 573, 694
Lsp1109I GCAGC 3 cut(s) 299, 613, 738
LweI GCATC 3 cut(s) 98, 597, 688
MaeIII GTNAC 1 cut(s) 68
MalI GATC 3 cut(s) 121, 529, 669
MboI GATC 3 cut(s) 119, 527, 667
MboII GAAGA 2 cut(s) 257, 573
MhlI GDGCHC 5 cut(s) 25, 172, 330, 560, 708
MluCI AATT 4 cut(s) 141, 206, 225, 342
MlyI GAGTC 4 cut(s) 267, 323, 341, 461
MmeI TCCRAC 3 cut(s) 390, 414, 633
MnlI CCTC 3 cut(s) 531, 534, 563
Mph1103I ATGCAT 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 58
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 2 cut(s) 198, 553
MspA1I CMGCKG 1 cut(s) 553
MspI CCGG 1 cut(s) 560
MspR9I CCNGG 2 cut(s) 416, 560
Mva1269I GAATGC 1 cut(s) 60
MvaI CCWGG 1 cut(s) 416
MwoI GCNNNNNNNGC 4 cut(s) 103, 299, 635, 726
NciI CCSGG 1 cut(s) 560
NdeII GATC 3 cut(s) 119, 527, 667
NlaIII CATG 6 cut(s) 89, 241, 326, 352, 674, 686
NmuCI GTSAC 1 cut(s) 68
NsiI ATGCAT 1 cut(s) 91
NspI RCATGY 1 cut(s) 89
OliI CACNNNNGTG 1 cut(s) 553
PaeI GCATGC 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 329
PaqCI CACCTGC 1 cut(s) 513
PctI GAATGC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 439
PkrI GCNGC 4 cut(s) 289, 292, 628, 728
PleI GAGTC 4 cut(s) 267, 322, 340, 460
PpsI GAGTC 4 cut(s) 267, 322, 340, 460
Psp124BI GAGCTC 2 cut(s) 172, 330
Psp6I CCWGG 1 cut(s) 414
PspGI CCWGG 1 cut(s) 414
PspXI VCTCGAGB 1 cut(s) 329
RsaI GTAC 2 cut(s) 590, 646
RsaNI GTAC 2 cut(s) 589, 645
RseI CAYNNNNRTG 2 cut(s) 198, 553
SacI GAGCTC 2 cut(s) 172, 330
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 4 cut(s) 288, 291, 627, 727
Sau3AI GATC 3 cut(s) 119, 527, 667
SchI GAGTC 4 cut(s) 267, 323, 341, 461
ScrFI CCNGG 2 cut(s) 416, 560
SduI GDGCHC 5 cut(s) 25, 172, 330, 560, 708
SetI ASST 7 cut(s) 172, 183, 223, 330, 420, 507, 628
SfaNI GCATC 3 cut(s) 98, 597, 688
Sfr274I CTCGAG 1 cut(s) 329
SlaI CTCGAG 1 cut(s) 329
SmiMI CAYNNNNRTG 2 cut(s) 198, 553
SmlI CTYRAG 2 cut(s) 329, 398
SmoI CTYRAG 2 cut(s) 329, 398
SphI GCATGC 1 cut(s) 89
Sse9I AATT 4 cut(s) 141, 206, 225, 342
SsiI CCGC 5 cut(s) 291, 338, 473, 551, 616
SspI AATATT 1 cut(s) 37
SstI GAGCTC 2 cut(s) 172, 330
StyD4I CCNGG 2 cut(s) 414, 558
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 1 cut(s) 588
TaqI TCGA 3 cut(s) 312, 330, 390
TasI AATT 4 cut(s) 141, 206, 225, 342
TatI WGTACW 2 cut(s) 588, 644
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 3 cut(s) 287, 626, 726
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 47, 244
VneI GTGCAC 1 cut(s) 21
XceI RCATGY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 58
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.