Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006693

Physical Location & Seq

Genomic Coordinates Reverse (-)

3057159 .. 3059881

Gene Structure 2723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2505 bp

ATGCTCCATCACATCCACAAATGGAAGCCCTTACATTTTCTACAAAAATCTCAGATTCTCGCTCCCCTCTCCTCCATCATCTTCACTAAACCTTCGGCGTCCGCTGCAAAGTTCGACGACGAGCCCGCCGCCGCCGCCGCCATCCCAAATCCTAGAAACACCGTCTCCGAAGTCATTACCGGCTTGGGAATCTTTGGTTTGAGAAAATTCTTGGATAATCGTTATTTTAGAACCATGGTCTCAAAGTTGAATCAGCCGGAGGTGGATTTGATTATTGAAAGTTTGAGTCTTGAGAGCTCGGATTCGGCCTTTGGGTTCTTCAAGTTTTTGAGGAATGAGTGTGGCTTTCGGCATTCGAGGATTTCTGAGTTTATCGTCGCTCATGTATTGGCGACGAACGGGCAGTTTCAGGAGTTGCGTTCGGTTGTAAAACAAATGGTGGATGAGGAGGGCCCTGGTTCTGCACCTTCACTTTGTGAGCTGATCTTGTATGGATTCAGGGACTGGGACTCAAGTAATGTGGTGTGGGATATGTTGGCGTTTGCTTATTCGAGATCTGAAATGGTTCATGATGCCCTGTCTGTTCTTGCTAAGATGAAAGATTTGAATTTGAAGGTTTCGACATCAACCTACAACTGCCTGTTGCATAATTTGAGGCATACAGATATCATGTGGAATGTTTATAATGAAATAAAAGATAGTGGAACTCCAGAGAGTGACTATACTGCATCTATACTTATAGATGGACTATGCCAGCAATCCGGCCTGCAAGATGCAGTTTCTTTCCTCATGGATGCTGAAAGGACGGAGAATGGGCCTTCAGTTGTTTCATTCAATACCATCATGTCTAGGTTCTGTAAATTGGGTTTTGTGGATGTTGCGAAGTCATTTTTTTGTATGATGTTCAAGTATGGACTAGTTCCTGATTCGTACAGTTATAATATTCTGATTCATGGGCTATGTGTAGCAGGTTCATTGGAAGAAGCATTGGAGTTCACTAAAGACATGGAGAGGCATGGGGTACAGCCTGACACAGTAACTTACAACATTCTTTGTAAGGGGTTTCATCTACTTGGTTTGATGAGTGGAGCTCGCAAGGTCATTCAGAAAATGTTGGTTAGAGGGTTGAATCCGGATCATGTTACATATACAATTATGATATGTGGGCACTGCCATGTTGGCAATATTGACGAAGCCCTTAAGTTGCGAAAAGAGATGATTTCAAGAGGTTTTCAGTTGAGTGTCATTGTATACAGTGTACTACTCAGCAGTATGTGTAAAAGTGGACGAGTAGAAGAAGCATTGCGATTGCTGTATGAGATGGAAGCTGTTGGCTTGGAACCAGATCTTATAACATATTCTATCCTCATTCATGGTCTATGCAAGCAAGGAGACGTACAAAGGGCTAGTGAAATATATAGAGAAATGTATATGAAGAGAATCATTCCCAATTACTTTGCACACCGTGCTATTCTGTTAGGTCTGCGTGAGAAAGGGGATCTATATGAGGCAAGGAAGTATTTTGATCATCTGACGACAAGGACTGTGACAGAGGACATTGTGCTGTATAATATTATGATGGATGGTTATGTAAAACTAGGTAACGTTGCAGAAGCGATACAATTATATAAACAAATAATTGAGAAGGGATTAAATCCCAGTACTGTCACTTTCAATACTCTTATTCATGGTTTCTGCAAAACTGGGAAACTAGTGGAGGCTCGAAAGATATTGGATACCATAGAGCTGCATGGATTACTACCAAGTCCAGTTACTTATACTACTCTTATGAATGCTAACTGTGAACAGGGAAACATCAACGGCATGCTTGAATTGCTTCGAGAGATGGAAGCAAAAGATGTAGAACCAACTCATGTATCTTACACGGTACTTATTAAAGGACTTTGCAGACAGGGGAAGCTGTGGGATGCTGTTCACTTAGTTGGGGAAATGTATGCCAAGGGCCTAAGCCCGGATCAAATCACATATAATACAGTCATCAAATGTTTCTGCAAAGCTCAAGACTTCGAGAAAGCTTTTCAGTTACACAACGAGATGTTAATGCATAATCTTGAGCCTACTCCTGTTACGTATAATCTCCTCATCAATGGTCTTTGTGTATATGGTGACCTAGAGGATGCTGACAGGCTACTGGTTTCTCTCAATGACAGCAATATCAATTTGACAAAAGTTGCCTATAGCACGTTAATAAAAGCACATTGTGCAAAGGGTGATGTATACAGGGCCGTGGAACTCTTTCATCAAATGGTGGACAAAGGATTTGAAATTTCCATCAGAGATTATAGTGCTGTAATTAATAGATTGTGCAAAAGGTGTTGGATGACTGAAGCAAAATACTTTTTCTGTATGATGTTATCTGATGGGATTTCTCCTGATCAAGAACTCTGTGAGGTGATGCTTAATGCTTTTTATCAAGGTGGTGAGTTCGATTCAGCAGCGGAACTCCTTGCTGAGATGATCAAATTTGGCTTTCGTCCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

835

Amino Acids

94.29

Weight (kDa)

5.93

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	273 - 321	2.2e-14	PPR repeat family
PPR_3	PF13812	304 - 353	1.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	305 - 337	9.3e-10	PPR repeat
PPR	PF01535	311 - 341	4.7e-07	PPR repeat
PPR_2	PF13041	312 - 355	7.2e-14	PPR repeat family
PPR_2	PF13041	359 - 392	7.7e-07	PPR repeat family
PPR_1	PF12854	374 - 406	2e-11	PPR repeat
PPR	PF01535	381 - 411	1.2e-08	PPR repeat
PPR_2	PF13041	385 - 427	6.8e-09	PPR repeat family
PPR_3	PF13812	402 - 457	6.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	409 - 442	1.3e-07	PPR repeat
PPR_2	PF13041	414 - 462	2.9e-15	PPR repeat family
PPR	PF01535	417 - 445	5.7e-06	PPR repeat
PPR_3	PF13812	436 - 492	2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	445 - 476	4.9e-12	PPR repeat
PPR	PF01535	451 - 478	5.7e-06	PPR repeat
TPR_24	PF23276	452 - 546	1.3e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	519 - 567	9.3e-16	PPR repeat family
PPR	PF01535	521 - 551	6e-07	PPR repeat
PPR_long	PF17177	535 - 639	7.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	549 - 580	6.5e-11	PPR repeat
PPR_3	PF13812	549 - 599	2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	553 - 601	7e-13	PPR repeat family
PPR_3	PF13812	576 - 633	4.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	588 - 637	5.3e-14	PPR repeat family
PPR_3	PF13812	612 - 670	7.5e-10	Pentatricopeptide repeat domain
PPR_long	PF17177	614 - 717	3.4e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	619 - 651	1.6e-09	PPR repeat
PPR_2	PF13041	626 - 672	9.1e-14	PPR repeat family
PPR_3	PF13812	647 - 703	1.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	654 - 686	2.5e-11	PPR repeat
TPR_24	PF23276	655 - 755	2.7e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	658 - 706	2.7e-17	PPR repeat family
PPR	PF01535	661 - 690	6e-07	PPR repeat
PPR_1	PF12854	690 - 718	5.1e-06	PPR repeat
PPR_2	PF13041	696 - 738	7.3e-07	PPR repeat family
PPR_1	PF12854	726 - 757	1.3e-06	PPR repeat
PPR	PF01535	731 - 761	1.7e-06	PPR repeat
PPR_2	PF13041	731 - 777	2.2e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13630 AT1G13630 AT1G13630 AT1G13630 AT1G13630 AT1G13630
fragaria_vesca	FvH4_4g29120
malus_domestica	MD13G1055600.v1.1 MD16G1054700.v1.1
prunus_persica	Prupe.2G062100_v2.0.a1 Prupe.2G062200_v2.0.a1 Prupe.2G062300_v2.0.a1 Prupe.7G020200_v2.0.a1 Prupe.7G020300_v2.0.a1
pyrus_communis	pycom16g04760
rosa_chinensis	RchiOBHm_Chr4g0437181
rosa_laevigata	RLG00000006457
rosa_multiflora	Rmu_co8390257.1_g000001 Rmu_sc0000591.1_g000006
rosa_roxburghii	Rroxscaffold_5G00378320
rosa_rugosa	Rorug04G0298500.1
rosa_samantha	Rh4AG353500 Rh4BG363300 Rh4CG377500 Rh4DG357300
rosa_wichuraiana	Rw4G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	684, 939, 1352
Acc36I	ACCTGC	1 cut(s)	959
AccI	GTMKAC	2 cut(s)	1251, 2238
AccIII	TCCGGA	1 cut(s)	1132
AciI	CCGC	7 cut(s)	102, 126, 129, 132, 135, 138, 2459
AclI	AACGTT	1 cut(s)	1605
AclWI	GGATC	3 cut(s)	1143, 1506, 1983
AcsI	RAATTY	4 cut(s)	206, 607, 2286, 2483
AcuI	CTGAAG	2 cut(s)	804, 2367
AcyI	GRCGYC	1 cut(s)	98
AdeI	CACNNNGTG	3 cut(s)	476, 1466, 2222
AfaI	GTAC	6 cut(s)	932, 1023, 1260, 1398, 1663, 1890
AfiI	CCNNNNNNNGG	1 cut(s)	1972
AflII	CTTAAG	1 cut(s)	1199
AhlI	ACTAGT	2 cut(s)	916, 1711
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	8 cut(s)	297, 481, 1091, 1328, 1747, 1921, 2018, 2036
AluI	AGCT	8 cut(s)	297, 481, 1091, 1328, 1747, 1921, 2018, 2036
Alw21I	GWGCWC	2 cut(s)	299, 1093
Alw26I	GTCTC	3 cut(s)	169, 244, 1386
AlwI	GGATC	3 cut(s)	1143, 1506, 1983
AlwNI	CAGNNNCTG	1 cut(s)	504
Aor13HI	TCCGGA	1 cut(s)	1132
AoxI	GGCC	6 cut(s)	306, 451, 763, 815, 1963, 2244
ApaI	GGGCCC	1 cut(s)	455
ApeKI	GCWGC	3 cut(s)	104, 1747, 2456
ApoI	RAATTY	4 cut(s)	206, 607, 2286, 2483
ArsI	GACNNNNNNTTYG	2 cut(s)	2264, 2296
AseI	ATTAAT	1 cut(s)	2316
Asp700I	GAANNNNTTC	3 cut(s)	564, 1836, 2256
AspS9I	GGNCC	5 cut(s)	451, 452, 815, 1963, 2244
AsuC2I	CCSGG	1 cut(s)	1973
AsuHPI	GGTGA	4 cut(s)	2138, 2243, 2425, 2453
BaeGI	GKGCMC	2 cut(s)	455, 1170
BaeI	ACNNNNGTAYC	2 cut(s)	1860, 1893
BanII	GRGCYC	4 cut(s)	126, 299, 455, 1093
Bbv12I	GWGCWC	2 cut(s)	299, 1093
BbvI	GCAGC	3 cut(s)	91, 1734, 2468
BceAI	ACGGC	2 cut(s)	1837, 2231
BciT130I	CCWGG	1 cut(s)	456
BciVI	GTATCC	1 cut(s)	1729
BclI	TGATCA	3 cut(s)	1525, 2395, 2478
BcnI	CCSGG	1 cut(s)	1973
BcoDI	GTCTC	3 cut(s)	169, 244, 1386
BcuI	ACTAGT	2 cut(s)	916, 1711
BfaI	CTAG	7 cut(s)	153, 849, 917, 1407, 1598, 1712, 2132
BfmI	CTRYAG	1 cut(s)	2197
BfrI	CTTAAG	1 cut(s)	1199
BfuAI	ACCTGC	1 cut(s)	959
BfuI	GTATCC	1 cut(s)	1729
BglI	GCCNNNNNGGC	1 cut(s)	1179
BglII	AGATCT	2 cut(s)	554, 1345
BisI	GCNGC	7 cut(s)	105, 129, 132, 135, 138, 1748, 2457
BlsI	GCNGC	7 cut(s)	106, 130, 133, 136, 139, 1749, 2458
BmcAI	AGTACT	1 cut(s)	1663
Bme1390I	CCNGG	2 cut(s)	456, 1973
BmgT120I	GGNCC	5 cut(s)	451, 452, 815, 1963, 2244
BmiI	GGNNCC	2 cut(s)	453, 1341
BmrFI	CCNGG	2 cut(s)	456, 1973
BmrI	ACTGGG	3 cut(s)	514, 1653, 1713
BmsI	GCATC	7 cut(s)	562, 737, 763, 784, 1918, 2128, 2406
BmuI	ACTGGG	3 cut(s)	514, 1653, 1713
BplI	GAGNNNNNCTC	2 cut(s)	1075, 1107
BpmI	CTGGAG	1 cut(s)	693
Bpu10I	CCTNAGC	1 cut(s)	1967
BpuEI	CTTGAG	4 cut(s)	311, 496, 2004, 2093
BpuMI	CCSGG	1 cut(s)	1973
BsaAI	YACGTR	1 cut(s)	2091
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	4 cut(s)	234, 454, 1959, 2247
BsaWI	WCCGGW	1 cut(s)	1132
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	1972
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	5 cut(s)	509, 1659, 1708, 1769, 2157
Bse3DI	GCAATG	1 cut(s)	1301
BseAI	TCCGGA	1 cut(s)	1132
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	4 cut(s)	234, 454, 1959, 2247
BseGI	GGATG	9 cut(s)	12, 141, 448, 799, 880, 1588, 1933, 2143, 2346
BseLI	CCNNNNNNNGG	1 cut(s)	1972
BseMI	GCAATG	1 cut(s)	1301
BseMII	CTCAG	4 cut(s)	65, 357, 1279, 2463
BseNI	ACTGG	5 cut(s)	509, 1659, 1708, 1769, 2157
BseRI	GAGGAG	3 cut(s)	61, 461, 2090
BseSI	GKGCMC	2 cut(s)	455, 1170
BseXI	GCAGC	3 cut(s)	91, 1734, 2468
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	6 cut(s)	308, 453, 765, 817, 1965, 2246
BsiHKAI	GWGCWC	2 cut(s)	299, 1093
BsiSI	CCGG	5 cut(s)	180, 257, 762, 1133, 1973
BslFI	GGGAC	2 cut(s)	515, 521
BslI	CCNNNNNNNGG	1 cut(s)	1972
BsmAI	GTCTC	3 cut(s)	169, 244, 1386
BsmBI	CGTCTC	2 cut(s)	169, 1386
BsmFI	GGGAC	2 cut(s)	515, 521
BsmI	GAATGC	2 cut(s)	352, 1798
BsnI	GGCC	6 cut(s)	308, 453, 765, 817, 1965, 2246
Bso31I	GGTCTC	1 cut(s)	244
Bsp120I	GGGCCC	1 cut(s)	451
Bsp1286I	GDGCHC	5 cut(s)	126, 299, 455, 1093, 1170
Bsp13I	TCCGGA	1 cut(s)	1132
Bsp143I	GATC	9 cut(s)	483, 554, 1135, 1345, 1498, 1525, 1975, 2395, 2478
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	7 cut(s)	102, 126, 129, 132, 135, 138, 2459
BspANI	GGCC	6 cut(s)	308, 453, 765, 817, 1965, 2246
BspCNI	CTCAG	4 cut(s)	64, 358, 1278, 2464
BspEI	TCCGGA	1 cut(s)	1132
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	2 cut(s)	453, 1341
BspMI	ACCTGC	1 cut(s)	959
BspPI	GGATC	3 cut(s)	1143, 1506, 1983
BspTI	CTTAAG	1 cut(s)	1199
BspTNI	GGTCTC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	1301
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	5 cut(s)	509, 1659, 1708, 1769, 2157
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	4 cut(s)	234, 454, 1959, 2247
BssMI	GATC	9 cut(s)	483, 554, 1135, 1345, 1498, 1525, 1975, 2395, 2478
BssNAI	GTATAC	2 cut(s)	1252, 2239
BssNI	GRCGYC	1 cut(s)	98
BssT1I	CCWWGG	2 cut(s)	234, 1959
Bst1107I	GTATAC	2 cut(s)	1252, 2239
Bst2UI	CCWGG	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	1430
BstACI	GRCGYC	1 cut(s)	98
BstAFI	CTTAAG	1 cut(s)	1199
BstAPI	GCANNNNNTGC	2 cut(s)	1466, 2222
BstBAI	YACGTR	1 cut(s)	2091
BstC8I	GCNNGC	6 cut(s)	126, 755, 767, 1093, 1385, 1826
BstDEI	CTNAG	7 cut(s)	51, 366, 591, 1265, 1939, 1967, 2472
BstDSI	CCRYGG	2 cut(s)	234, 2247
BstEII	GGTNACC	1 cut(s)	2126
BstF5I	GGATG	9 cut(s)	12, 141, 448, 799, 880, 1588, 1933, 2143, 2346
BstKTI	GATC	9 cut(s)	486, 557, 1138, 1348, 1501, 1528, 1978, 2398, 2481
BstMAI	GTCTC	3 cut(s)	169, 244, 1386
BstMBI	GATC	9 cut(s)	483, 554, 1135, 1345, 1498, 1525, 1975, 2395, 2478
BstMWI	GCNNNNNNNGC	7 cut(s)	104, 134, 137, 1179, 1466, 1834, 2222
BstNI	CCWGG	1 cut(s)	456
BstNSI	RCATGY	1 cut(s)	1828
BstPI	GGTNACC	1 cut(s)	2126
BstSCI	CCNGG	2 cut(s)	454, 1971
BstSFI	CTRYAG	1 cut(s)	2197
BstSLI	GKGCMC	2 cut(s)	455, 1170
BstSNI	TACGTA	1 cut(s)	2091
BstV1I	GCAGC	3 cut(s)	91, 1734, 2468
BstX2I	RGATCY	3 cut(s)	554, 1345, 1498
BstYI	RGATCY	3 cut(s)	554, 1345, 1498
BstZ17I	GTATAC	2 cut(s)	1252, 2239
BsuI	GTATCC	1 cut(s)	1729
BsuRI	GGCC	6 cut(s)	308, 453, 765, 817, 1965, 2246
BtgI	CCRYGG	2 cut(s)	234, 2247
BtsCI	GGATG	9 cut(s)	12, 141, 448, 799, 880, 1588, 1933, 2143, 2346
BtsI	GCAGTG	1 cut(s)	1168
BtsIMutI	CAGTG	2 cut(s)	1168, 1261
BveI	ACCTGC	1 cut(s)	959
Cac8I	GCNNGC	6 cut(s)	126, 755, 767, 1093, 1385, 1826
CaiI	CAGNNNCTG	1 cut(s)	504
CciI	TCATGA	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	5 cut(s)	451, 452, 815, 1963, 2244
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	6 cut(s)	931, 1022, 1259, 1397, 1662, 1889
CspCI	CAANNNNNGTGG	2 cut(s)	501, 536
CviQI	GTAC	6 cut(s)	931, 1022, 1259, 1397, 1662, 1889
DdeI	CTNAG	7 cut(s)	51, 366, 591, 1265, 1939, 1967, 2472
DpnI	GATC	9 cut(s)	485, 556, 1137, 1347, 1500, 1527, 1977, 2397, 2480
DpnII	GATC	9 cut(s)	483, 554, 1135, 1345, 1498, 1525, 1975, 2395, 2478
DraIII	CACNNNGTG	3 cut(s)	476, 1466, 2222
Eam1104I	CTCTTC	1 cut(s)	1430
EarI	CTCTTC	1 cut(s)	1430
Ecl136II	GAGCTC	2 cut(s)	297, 1091
Eco105I	TACGTA	1 cut(s)	2091
Eco130I	CCWWGG	2 cut(s)	234, 1959
Eco24I	GRGCYC	4 cut(s)	126, 299, 455, 1093
Eco31I	GGTCTC	1 cut(s)	244
Eco32I	GATATC	1 cut(s)	667
Eco53kI	GAGCTC	2 cut(s)	297, 1091
Eco57I	CTGAAG	2 cut(s)	804, 2367
Eco91I	GGTNACC	1 cut(s)	2126
EcoICRI	GAGCTC	2 cut(s)	297, 1091
EcoO109I	RGGNCCY	3 cut(s)	451, 452, 1963
EcoO65I	GGTNACC	1 cut(s)	2126
EcoRII	CCWGG	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	667
EcoT14I	CCWWGG	2 cut(s)	234, 1959
EcoT22I	ATGCAT	1 cut(s)	2067
EcoT38I	GRGCYC	4 cut(s)	126, 299, 455, 1093
ErhI	CCWWGG	2 cut(s)	234, 1959
Esp3I	CGTCTC	2 cut(s)	169, 1386
FaqI	GGGAC	2 cut(s)	515, 521
FauI	CCCGC	1 cut(s)	133
FbaI	TGATCA	3 cut(s)	1525, 2395, 2478
FblI	GTMKAC	2 cut(s)	1251, 2238
Fnu4HI	GCNGC	7 cut(s)	105, 129, 132, 135, 138, 1748, 2457
FokI	GGATG	8 cut(s)	128, 455, 806, 887, 1595, 1940, 2150, 2353
FriOI	GRGCYC	4 cut(s)	126, 299, 455, 1093
Fsp4HI	GCNGC	7 cut(s)	105, 129, 132, 135, 138, 1748, 2457
FspBI	CTAG	7 cut(s)	153, 849, 917, 1407, 1598, 1712, 2132
GluI	GCNGC	7 cut(s)	105, 129, 132, 135, 138, 1748, 2457
GsuI	CTGGAG	1 cut(s)	693
HaeIII	GGCC	6 cut(s)	308, 453, 765, 817, 1965, 2246
HapII	CCGG	5 cut(s)	180, 257, 762, 1133, 1973
HgaI	GACGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	2034
HpaII	CCGG	5 cut(s)	180, 257, 762, 1133, 1973
HphI	GGTGA	4 cut(s)	2138, 2243, 2425, 2453
Hpy166II	GTNNAC	8 cut(s)	996, 1252, 1259, 1286, 1805, 1936, 2239, 2272
Hpy8I	GTNNAC	8 cut(s)	996, 1252, 1259, 1286, 1805, 1936, 2239, 2272
Hpy99I	CGWCG	4 cut(s)	119, 122, 380, 397
HpyAV	CCTTC	5 cut(s)	102, 477, 607, 828, 1639
HpyCH4IV	ACGT	4 cut(s)	1395, 1605, 2090, 2204
HpyF10VI	GCNNNNNNNGC	7 cut(s)	104, 134, 137, 1179, 1466, 1834, 2222
HpyF3I	CTNAG	7 cut(s)	51, 366, 591, 1265, 1939, 1967, 2472
HpySE526I	ACGT	4 cut(s)	1395, 1605, 2090, 2204
Hsp92I	GRCGYC	1 cut(s)	98
Kpn2I	TCCGGA	1 cut(s)	1132
Ksp22I	TGATCA	3 cut(s)	1525, 2395, 2478
Kzo9I	GATC	9 cut(s)	483, 554, 1135, 1345, 1498, 1525, 1975, 2395, 2478
LmnI	GCTCC	3 cut(s)	9, 67, 1088
Lsp1109I	GCAGC	3 cut(s)	91, 1734, 2468
LweI	GCATC	7 cut(s)	562, 737, 763, 784, 1918, 2128, 2406
MaeI	CTAG	7 cut(s)	153, 849, 917, 1407, 1598, 1712, 2132
MaeII	ACGT	4 cut(s)	1395, 1605, 2090, 2204
MalI	GATC	9 cut(s)	485, 556, 1137, 1347, 1500, 1527, 1977, 2397, 2480
MboI	GATC	9 cut(s)	483, 554, 1135, 1345, 1498, 1525, 1975, 2395, 2478
MboII	GAAGA	5 cut(s)	73, 310, 992, 1307, 1447
MflI	RGATCY	3 cut(s)	554, 1345, 1498
MhlI	GDGCHC	5 cut(s)	126, 299, 455, 1093, 1170
MlyI	GAGTC	2 cut(s)	295, 503
MmeI	TCCRAC	1 cut(s)	2318
Mph1103I	ATGCAT	1 cut(s)	2067
MroI	TCCGGA	1 cut(s)	1132
MroXI	GAANNNNTTC	3 cut(s)	564, 1836, 2256
MseI	TTAA	8 cut(s)	1200, 1652, 1896, 2060, 2207, 2316, 2421, 2503
MslI	CAYNNNNRTG	1 cut(s)	1173
MspA1I	CMGCKG	2 cut(s)	104, 2459
MspCI	CTTAAG	1 cut(s)	1199
MspI	CCGG	5 cut(s)	180, 257, 762, 1133, 1973
MspR9I	CCNGG	2 cut(s)	456, 1973
Mva1269I	GAATGC	2 cut(s)	352, 1798
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	7 cut(s)	104, 134, 137, 1179, 1466, 1834, 2222
NciI	CCSGG	1 cut(s)	1973
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	9 cut(s)	483, 554, 1135, 1345, 1498, 1525, 1975, 2395, 2478
NlaIV	GGNNCC	2 cut(s)	453, 1341
NmuCI	GTSAC	4 cut(s)	716, 1546, 1666, 2126
NsiI	ATGCAT	1 cut(s)	2067
NspI	RCATGY	1 cut(s)	1828
PaeI	GCATGC	1 cut(s)	1828
PagI	TCATGA	1 cut(s)	568
PctI	GAATGC	2 cut(s)	352, 1798
PdmI	GAANNNNTTC	3 cut(s)	564, 1836, 2256
PkrI	GCNGC	7 cut(s)	106, 130, 133, 136, 139, 1749, 2458
PleI	GAGTC	2 cut(s)	294, 503
PpsI	GAGTC	2 cut(s)	294, 503
Ppu21I	YACGTR	1 cut(s)	2091
PshBI	ATTAAT	1 cut(s)	2316
PsiI	TTATAA	3 cut(s)	684, 939, 1352
Psp124BI	GAGCTC	2 cut(s)	299, 1093
Psp1406I	AACGTT	1 cut(s)	1605
Psp6I	CCWGG	1 cut(s)	454
PspEI	GGTNACC	1 cut(s)	2126
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	2 cut(s)	453, 1341
PspOMI	GGGCCC	1 cut(s)	451
PspPI	GGNCC	5 cut(s)	451, 452, 815, 1963, 2244
PstNI	CAGNNNCTG	1 cut(s)	504
PsuI	RGATCY	3 cut(s)	554, 1345, 1498
RsaI	GTAC	6 cut(s)	932, 1023, 1260, 1398, 1663, 1890
RsaNI	GTAC	6 cut(s)	931, 1022, 1259, 1397, 1662, 1889
RseI	CAYNNNNRTG	1 cut(s)	1173
SacI	GAGCTC	2 cut(s)	299, 1093
SaqAI	TTAA	8 cut(s)	1200, 1652, 1896, 2060, 2207, 2316, 2421, 2503
SatI	GCNGC	7 cut(s)	105, 129, 132, 135, 138, 1748, 2457
Sau3AI	GATC	9 cut(s)	483, 554, 1135, 1345, 1498, 1525, 1975, 2395, 2478
Sau96I	GGNCC	5 cut(s)	451, 452, 815, 1963, 2244
ScaI	AGTACT	1 cut(s)	1663
SchI	GAGTC	2 cut(s)	295, 503
ScrFI	CCNGG	2 cut(s)	456, 1973
SduI	GDGCHC	5 cut(s)	126, 299, 455, 1093, 1170
SfaNI	GCATC	7 cut(s)	562, 737, 763, 784, 1918, 2128, 2406
SfcI	CTRYAG	1 cut(s)	2197
SmiMI	CAYNNNNRTG	1 cut(s)	1173
SmlI	CTYRAG	5 cut(s)	290, 511, 1199, 2019, 2072
SmoI	CTYRAG	5 cut(s)	290, 511, 1199, 2019, 2072
SnaBI	TACGTA	1 cut(s)	2091
SpeI	ACTAGT	2 cut(s)	916, 1711
SphI	GCATGC	1 cut(s)	1828
SsiI	CCGC	7 cut(s)	102, 126, 129, 132, 135, 138, 2459
SspI	AATATT	3 cut(s)	943, 1186, 1573
SspMI	CTAG	7 cut(s)	153, 849, 917, 1407, 1598, 1712, 2132
SstI	GAGCTC	2 cut(s)	299, 1093
StyD4I	CCNGG	2 cut(s)	454, 1971
StyI	CCWWGG	2 cut(s)	234, 1959
TaiI	ACGT	4 cut(s)	1398, 1608, 2093, 2207
TaqI	TCGA	8 cut(s)	114, 356, 551, 620, 1723, 1840, 2028, 2448
TatI	WGTACW	2 cut(s)	1258, 1661
TauI	GCSGC	4 cut(s)	131, 134, 137, 140
Tru1I	TTAA	8 cut(s)	1200, 1652, 1896, 2060, 2207, 2316, 2421, 2503
Tru9I	TTAA	8 cut(s)	1200, 1652, 1896, 2060, 2207, 2316, 2421, 2503
TscAI	CASTG	2 cut(s)	1175, 1261
TseFI	GTSAC	4 cut(s)	716, 1546, 1666, 2126
TseI	GCWGC	3 cut(s)	104, 1747, 2456
Tsp45I	GTSAC	4 cut(s)	716, 1546, 1666, 2126
TspGWI	ACGGA	1 cut(s)	821
TspRI	CASTG	2 cut(s)	1175, 1261
Vha464I	CTTAAG	1 cut(s)	1199
VspI	ATTAAT	1 cut(s)	2316
XapI	RAATTY	4 cut(s)	206, 607, 2286, 2483
XceI	RCATGY	1 cut(s)	1828
XmiI	GTMKAC	2 cut(s)	1251, 2238
XmnI	GAANNNNTTC	3 cut(s)	564, 1836, 2256
XspI	CTAG	7 cut(s)	153, 849, 917, 1407, 1598, 1712, 2132
ZrmI	AGTACT	1 cut(s)	1663
Zsp2I	ATGCAT	1 cut(s)	2067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.